Rroxscaffold_4G00303530

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003909
Physical Location & Seq
Forward (+)
23918942 .. 23922286
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00303530.1

Sequence Viewer

Length: 1413 bp
ATGAAGGTTGCGGTCAAATTCTGTTGGATTGGAAATCTGGATCAAATACTACTTGTGGTTGTTGACCAGATGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACGCTTGTAAAATCCTTGGAAGACTTGATACAAGCTTTTAAGAAATCTGTGTGCGGGGAGGAAGCAAATCAGAACTCATTTGTTGAACAAAATGGAGTTGCAATCATATCCAATGTTTTGAGTTCTGCAAACCTTTCTCCGGAGCCAGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTCTGGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTGTGTATGATTATCTACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCAAGTTTACAATGTGTTGATGGAAATGAGAATGGTGAAGATACAGAATGTGGAGAAGAGTCTTTCTCGAAAGAGCAAGAATTTTGGTTGGAAAACGTATCAGAGATCTTGAATGAGCGTCTCAACGAGATAACTGTTCCCAATGATTTTGCTGTGTGTGTTTATGGAATATTCAAGAACTCCGTCAGAGTTCTAAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTATTGAGATAGATGTCCTAGGATACTCGCTCACAATCTTGAGAGATATATGTGCCCAAGGAACACTAAGAGGATCAACAGAGAATACGATGGATGTTGTGGATGTTTTGCTCTCCTCTGGTCTCATTGAATTACTTTTGTGTTTGCTTCGTGACCTTGAGCCGCCAGCAATAATTAGGAAATCTATCAACCAAGCTGAGGACCAAGATGGATCAAATTCTTCGACATCAAAACCATGTCCATACAAAGGTTTTCGGAGAGACATAGTTGGGGTCATTGGCAATTGCTTATATGGAAGGAAGCTTGTGCAAGATGAGATTAGGAGAGAGAATGGGCTTCTTCTGCTGTTGCAACAGTGTGTAACAGATGATGACAACCCGTACTTAAGGGAGTGGGGCATTTGGTGTGTGAGGAACTTGTTGGAGCGGAACCAAGAAAATCAGCAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTTGATGTGCCCGACCTTGCTCGACTTGGTCTTCGAGTAGAGATGAATCCACAAACTGGACGTCCGAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

470

Amino Acids

52.01

Weight (kDa)

4.62

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 368 - 466 1.1e-33 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1390
Acc36I ACCTGC 1 cut(s) 819
AccB7I CCANNNNNTGG 3 cut(s) 284, 485, 1382
AccBSI CCGCTC 1 cut(s) 1276
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 5 cut(s) 11, 186, 1013, 1276, 1298
AclWI GGATC 3 cut(s) 48, 931, 1069
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 6 cut(s) 17, 380, 491, 579, 695, 1066
AcyI GRCGYC 1 cut(s) 1387
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 87, 560, 1232
AfiI CCNNNNNNNGG 7 cut(s) 271, 284, 469, 485, 1048, 1097, 1382
AflII CTTAAG 1 cut(s) 1234
AgsI TTSAA 6 cut(s) 218, 576, 727, 790, 980, 1319
AhdI GACNNNNNGTC 1 cut(s) 420
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 4 cut(s) 167, 1046, 1153, 1396
AluI AGCT 4 cut(s) 167, 1046, 1153, 1396
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 3 cut(s) 740, 977, 1104
AlwI GGATC 3 cut(s) 48, 931, 1069
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 5 cut(s) 323, 346, 361, 530, 533
ApoI RAATTY 6 cut(s) 17, 380, 491, 579, 695, 1066
ArsI GACNNNNNNTTYG 4 cut(s) 1341, 1372, 1373, 1404
Asp700I GAANNNNTTC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 868
AspS9I GGNCC 2 cut(s) 422, 1051
AsuHPI GGTGA 2 cut(s) 500, 662
AvaII GGWCC 2 cut(s) 422, 1051
AvrII CCTAGG 1 cut(s) 868
BaeGI GKGCMC 2 cut(s) 907, 1338
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbsI GAAGAC 3 cut(s) 159, 419, 1349
Bbv12I GWGCWC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 1047
BbvI GCAGC 5 cut(s) 310, 358, 373, 517, 520
BccI CCATC 4 cut(s) 449, 629, 934, 1052
BciVI GTATCC 1 cut(s) 866
BcoDI GTCTC 3 cut(s) 740, 977, 1104
BfaI CTAG 1 cut(s) 869
BfmI CTRYAG 1 cut(s) 534
BfrI CTTAAG 1 cut(s) 1234
BfuAI ACCTGC 1 cut(s) 819
BfuI GTATCC 1 cut(s) 866
BglII AGATCT 1 cut(s) 720
BisI GCNGC 6 cut(s) 324, 347, 362, 531, 534, 1013
BlnI CCTAGG 1 cut(s) 868
BlsI GCNGC 6 cut(s) 325, 348, 363, 532, 535, 1014
Bme18I GGWCC 2 cut(s) 422, 1051
BmeRI GACNNNNNGTC 1 cut(s) 420
BmgT120I GGNCC 2 cut(s) 422, 1051
BmiI GGNNCC 4 cut(s) 276, 460, 594, 1280
BmsI GCATC 1 cut(s) 60
BpiI GAAGAC 3 cut(s) 159, 419, 1349
BplI GAGNNNNNCTC 2 cut(s) 665, 697
BpmI CTGGAG 2 cut(s) 86, 354
Bpu10I CCTNAGC 1 cut(s) 1047
BpuEI CTTGAG 3 cut(s) 601, 910, 1028
BsaHI GRCGYC 1 cut(s) 1387
BsaI GGTCTC 1 cut(s) 977
BsaJI CCNNGG 3 cut(s) 147, 868, 907
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 7 cut(s) 271, 284, 469, 485, 1048, 1097, 1382
Bse1I ACTGG 2 cut(s) 474, 1387
BseAI TCCGGA 1 cut(s) 271
BseDI CCNNGG 3 cut(s) 147, 868, 907
BseGI GGATG 2 cut(s) 949, 958
BseLI CCNNNNNNNGG 7 cut(s) 271, 284, 469, 485, 1048, 1097, 1382
BseMII CTCAG 2 cut(s) 387, 1038
BseNI ACTGG 2 cut(s) 474, 1387
BseRI GAGGAG 1 cut(s) 955
BseSI GKGCMC 2 cut(s) 907, 1338
BseXI GCAGC 5 cut(s) 310, 358, 373, 517, 520
BshFI GGCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 272, 604
BslI CCNNNNNNNGG 7 cut(s) 271, 284, 469, 485, 1048, 1097, 1382
BsmAI GTCTC 3 cut(s) 740, 977, 1104
BsmBI CGTCTC 1 cut(s) 740
BsnI GGCC 1 cut(s) 607
Bso31I GGTCTC 1 cut(s) 977
Bsp1286I GDGCHC 3 cut(s) 83, 907, 1338
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 4 cut(s) 40, 720, 923, 1061
BspACI CCGC 5 cut(s) 11, 186, 1013, 1276, 1298
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 2 cut(s) 386, 1039
BspEI TCCGGA 1 cut(s) 271
BspHI TCATGA 1 cut(s) 1409
BspLI GGNNCC 4 cut(s) 276, 460, 594, 1280
BspMAI CTGCAG 1 cut(s) 538
BspMI ACCTGC 1 cut(s) 819
BspPI GGATC 3 cut(s) 48, 931, 1069
BspTI CTTAAG 1 cut(s) 1234
BspTNI GGTCTC 1 cut(s) 977
BsrBI CCGCTC 1 cut(s) 1276
BsrI ACTGG 2 cut(s) 474, 1387
BssECI CCNNGG 3 cut(s) 147, 868, 907
BssMI GATC 4 cut(s) 40, 720, 923, 1061
BssNI GRCGYC 1 cut(s) 1387
BssT1I CCWWGG 3 cut(s) 147, 868, 907
Bst4CI ACNGT 2 cut(s) 751, 1206
Bst6I CTCTTC 2 cut(s) 374, 666
BstACI GRCGYC 1 cut(s) 1387
BstAFI CTTAAG 1 cut(s) 1234
BstC8I GCNNGC 4 cut(s) 305, 351, 1017, 1296
BstDEI CTNAG 4 cut(s) 373, 809, 917, 1047
BstF5I GGATG 2 cut(s) 949, 958
BstKTI GATC 4 cut(s) 43, 723, 926, 1064
BstMAI GTCTC 3 cut(s) 740, 977, 1104
BstMBI GATC 4 cut(s) 40, 720, 923, 1061
BstMWI GCNNNNNNNGC 3 cut(s) 323, 329, 1192
BstNSI RCATGY 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 534
BstSLI GKGCMC 2 cut(s) 907, 1338
BstV1I GCAGC 5 cut(s) 310, 358, 373, 517, 520
BstV2I GAAGAC 3 cut(s) 159, 419, 1349
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BsuI GTATCC 1 cut(s) 866
BsuRI GGCC 1 cut(s) 607
BtsCI GGATG 2 cut(s) 949, 958
BtsIMutI CAGTG 1 cut(s) 1211
BveI ACCTGC 1 cut(s) 819
Cac8I GCNNGC 4 cut(s) 305, 351, 1017, 1296
CciI TCATGA 1 cut(s) 1409
Cfr13I GGNCC 2 cut(s) 422, 1051
CseI GACGC 1 cut(s) 722
Csp6I GTAC 3 cut(s) 86, 559, 1231
CviAII CATG 3 cut(s) 350, 1086, 1410
CviQI GTAC 3 cut(s) 86, 559, 1231
DdeI CTNAG 4 cut(s) 373, 809, 917, 1047
DpnI GATC 4 cut(s) 42, 722, 925, 1063
DpnII GATC 4 cut(s) 40, 720, 923, 1061
DraIII CACNNNGTG 1 cut(s) 485
DriI GACNNNNNGTC 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 374, 666
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 2 cut(s) 374, 666
Eco130I CCWWGG 3 cut(s) 147, 868, 907
Eco31I GGTCTC 1 cut(s) 977
Eco47I GGWCC 2 cut(s) 422, 1051
EcoT14I CCWWGG 3 cut(s) 147, 868, 907
ErhI CCWWGG 3 cut(s) 147, 868, 907
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 3 cut(s) 353, 1089, 1413
FatI CATG 3 cut(s) 349, 1085, 1409
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 6 cut(s) 324, 347, 362, 531, 534, 1013
FokI GGATG 2 cut(s) 956, 965
Fsp4HI GCNGC 6 cut(s) 324, 347, 362, 531, 534, 1013
FspBI CTAG 1 cut(s) 869
GluI GCNGC 6 cut(s) 324, 347, 362, 531, 534, 1013
GsuI CTGGAG 2 cut(s) 86, 354
HaeIII GGCC 1 cut(s) 607
HapII CCGG 2 cut(s) 272, 604
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 1387
Hin1II CATG 3 cut(s) 353, 1089, 1413
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 3 cut(s) 165, 1151, 1394
HinfI GANTC 2 cut(s) 674, 1372
HpaII CCGG 2 cut(s) 272, 604
HphI GGTGA 2 cut(s) 500, 662
Hpy166II GTNNAC 2 cut(s) 64, 623
Hpy188I TCNGA 6 cut(s) 204, 376, 718, 803, 1107, 1392
Hpy8I GTNNAC 2 cut(s) 64, 623
HpyAV CCTTC 2 cut(s) 505, 1140
HpyCH4III ACNGT 2 cut(s) 751, 1206
HpyCH4IV ACGT 2 cut(s) 711, 1387
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 329, 1192
HpyF3I CTNAG 4 cut(s) 373, 809, 917, 1047
HpySE526I ACGT 2 cut(s) 711, 1387
Hsp92I GRCGYC 1 cut(s) 1387
Hsp92II CATG 3 cut(s) 353, 1089, 1413
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 4 cut(s) 40, 720, 923, 1061
LmnI GCTCC 2 cut(s) 274, 1273
Lsp1109I GCAGC 5 cut(s) 310, 358, 373, 517, 520
LweI GCATC 1 cut(s) 60
MaeI CTAG 1 cut(s) 869
MaeII ACGT 2 cut(s) 711, 1387
MaeIII GTNAC 2 cut(s) 1001, 1210
MalI GATC 4 cut(s) 42, 722, 925, 1063
MbiI CCGCTC 1 cut(s) 1276
MboI GATC 4 cut(s) 40, 720, 923, 1061
MfeI CAATTG 1 cut(s) 1132
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 3 cut(s) 83, 907, 1338
MlyI GAGTC 1 cut(s) 683
MmeI TCCRAC 4 cut(s) 5, 684, 866, 1251
MnlI CCTC 8 cut(s) 184, 435, 583, 818, 914, 976, 1042, 1254
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 4 cut(s) 113, 171, 1235, 1401
MspCI CTTAAG 1 cut(s) 1234
MspI CCGG 2 cut(s) 272, 604
MunI CAATTG 1 cut(s) 1132
MwoI GCNNNNNNNGC 3 cut(s) 323, 329, 1192
NdeII GATC 4 cut(s) 40, 720, 923, 1061
NlaIII CATG 3 cut(s) 353, 1089, 1413
NlaIV GGNNCC 4 cut(s) 276, 460, 594, 1280
NmuCI GTSAC 1 cut(s) 1001
NspI RCATGY 1 cut(s) 353
PaeI GCATGC 1 cut(s) 353
PagI TCATGA 1 cut(s) 1409
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 1372
PflFI GACNNNGTC 1 cut(s) 1353
PflMI CCANNNNNTGG 3 cut(s) 284, 485, 1382
PkrI GCNGC 6 cut(s) 325, 348, 363, 532, 535, 1014
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PspN4I GGNNCC 4 cut(s) 276, 460, 594, 1280
PspPI GGNCC 2 cut(s) 422, 1051
PstI CTGCAG 1 cut(s) 538
PsuI RGATCY 1 cut(s) 720
PsyI GACNNNGTC 1 cut(s) 1353
RsaI GTAC 3 cut(s) 87, 560, 1232
RsaNI GTAC 3 cut(s) 86, 559, 1231
SaqAI TTAA 4 cut(s) 113, 171, 1235, 1401
SatI GCNGC 6 cut(s) 324, 347, 362, 531, 534, 1013
Sau3AI GATC 4 cut(s) 40, 720, 923, 1061
Sau96I GGNCC 2 cut(s) 422, 1051
SchI GAGTC 1 cut(s) 683
SduI GDGCHC 3 cut(s) 83, 907, 1338
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 422, 1051
SmlI CTYRAG 4 cut(s) 616, 889, 1007, 1234
SmoI CTYRAG 4 cut(s) 616, 889, 1007, 1234
SphI GCATGC 1 cut(s) 353
SsiI CCGC 5 cut(s) 11, 186, 1013, 1276, 1298
SspI AATATT 1 cut(s) 786
SspMI CTAG 1 cut(s) 869
StyI CCWWGG 3 cut(s) 147, 868, 907
TaaI ACNGT 2 cut(s) 751, 1206
TaiI ACGT 2 cut(s) 714, 1390
TaqI TCGA 4 cut(s) 683, 1073, 1348, 1360
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 1 cut(s) 1372
Tru1I TTAA 4 cut(s) 113, 171, 1235, 1401
Tru9I TTAA 4 cut(s) 113, 171, 1235, 1401
TscAI CASTG 1 cut(s) 1211
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 5 cut(s) 323, 346, 361, 530, 533
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 2 cut(s) 17, 1385
TspGWI ACGGA 1 cut(s) 787
TspRI CASTG 1 cut(s) 1211
Tth111I GACNNNGTC 1 cut(s) 1353
Van91I CCANNNNNTGG 3 cut(s) 284, 485, 1382
Vha464I CTTAAG 1 cut(s) 1234
VpaK11BI GGWCC 2 cut(s) 422, 1051
XapI RAATTY 6 cut(s) 17, 380, 491, 579, 695, 1066
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmaJI CCTAGG 1 cut(s) 868
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 1 cut(s) 869
ZraI GACGTC 1 cut(s) 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.