pycom02g16000

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0003909
Physical Location & Seq
Forward (+)
13065367 .. 13066631
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16000.1

Sequence Viewer

Length: 1116 bp
ATGGGGTTGCAAGTTCTCGCTAATGTTTCATTGGCTGGACAACGGCATCAGTGTGCCATTTGGCAGCAACTTTTTCCGAAAGAATTTGTCGCTATAGCAAGAGTTCAGAGCCGGGAAACTTGTGATCCCTTGTGCATGGTTATCTATGCTTGTTGTGATGGAAGCCCTGAACTGTTTGCCCAACTTTGTGGTGATCGTGGGATAACTATCGTGAAAGAGATTGTAAAGACTACTGCTGCAGTTGGTTTCGGAGAAGATTGGTACAAGTTGATTCTTTCAAGAACCTGCTTAGAAGGACCTTACTTCCAGTCACTTTTCTCAAATTTAGGATTTGTTGGTGCTACTGAGAATGGCGAAGACACTGAATTTAGAGAAGACGTTTTCTCAACTGAGCAAGCATTTTTCTTGAGAAACATATCTGACATCTTGAATGAGCGGCTTCAAGAGATTACTGTACCTAGTGATTTTGTACTGTGTGTCTTTGGGATATTTAAGAAATCTGTTGGGATTCTTAATTATGCCGCAAGAGGCAAGTCTGGACTTCCAACAGGTTCTATTATGATAGATGTTCTAGGATACTCACTCACAATCCTGAGAGATGTATGTGCTCAGAAGTCCGTAAGAGGCTCTAACGAGGACCTGGGGGATGCTGTTGATGTTTTGCTATCCCATGGCCTCATAGAATTACTTTTATGTTTGCTTCGTGATCTTGAGCCAACATCAGTAATGAGGAAAGCTATCAAGCAAGGTGAGGACCAAGAGGGACCAAAGCCTTCTTCCTTAAAGCCCTGCCCTTATAAAGGATTTCGGAGAGATATAGTGGCAGTCATTGGCAATTGCACATATAAAAGGAAGCTTGTACAAGATGAGATTAGACAAAAGGATGGGATTCTTCTGCTCCTGCAACAGTGTGGCCTTGATGACGACAATCCGTACTTAAGGGAGTGGGGCATTTGGTGCGTGAGGAACTTATTCGAAGGCAACGAAGAAAACGAAAGGGTAGTGGCTGAATTGGAGCTTCAAGGGGCTGTTGATACACCAGAAATTGCTCAACTTGGTCTTCGAGTAGAGGTGAATCCAGAAACTAGACGGCCAAAGCTTGTTAACATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

372

Amino Acids

41.39

Weight (kDa)

4.97

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 269 - 362 1.1e-34 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
Acc36I ACCTGC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 436
AciI CCGC 2 cut(s) 436, 522
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 1091
AcsI RAATTY 3 cut(s) 83, 322, 365
AfaI GTAC 5 cut(s) 263, 456, 471, 861, 935
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 1 cut(s) 937
AgsI TTSAA 4 cut(s) 279, 430, 443, 1022
AjnI CCWGG 1 cut(s) 639
AjuI GAANNNNNNNTTGG 2 cut(s) 760, 792
AluBI AGCT 4 cut(s) 737, 856, 1018, 1099
AluI AGCT 4 cut(s) 737, 856, 1018, 1099
Alw21I GWGCWC 1 cut(s) 610
AlwI GGATC 1 cut(s) 119
AoxI GGCC 3 cut(s) 673, 913, 1091
ApeKI GCWGC 2 cut(s) 64, 236
ApoI RAATTY 3 cut(s) 83, 322, 365
Asp700I GAANNNNTTC 1 cut(s) 971
AspS9I GGNCC 4 cut(s) 296, 637, 754, 764
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 203, 761, 1084
AsuII TTCGAA 1 cut(s) 975
AvaII GGWCC 4 cut(s) 296, 637, 754, 764
BbsI GAAGAC 3 cut(s) 363, 381, 1052
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 2 cut(s) 76, 223
BccI CCATC 2 cut(s) 152, 878
BceAI ACGGC 2 cut(s) 59, 1106
BciT130I CCWGG 1 cut(s) 641
BciVI GTATCC 1 cut(s) 569
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 3 cut(s) 459, 572, 1086
BfmI CTRYAG 2 cut(s) 93, 237
BfrI CTTAAG 1 cut(s) 937
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 569
BisI GCNGC 4 cut(s) 65, 237, 437, 522
BlsI GCNGC 4 cut(s) 66, 238, 438, 523
Bme1390I CCNGG 2 cut(s) 113, 641
Bme18I GGWCC 4 cut(s) 296, 637, 754, 764
BmgT120I GGNCC 4 cut(s) 296, 637, 754, 764
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 2 cut(s) 113, 641
BmsI GCATC 2 cut(s) 55, 637
BpiI GAAGAC 3 cut(s) 363, 381, 1052
Bpu14I TTCGAA 1 cut(s) 975
BpuEI CTTGAG 2 cut(s) 427, 731
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 206
BseBI CCWGG 1 cut(s) 641
BseDI CCNNGG 2 cut(s) 640, 670
BseGI GGATG 3 cut(s) 652, 889, 1107
BseJI GATNNNNATC 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 4 cut(s) 336, 381, 584, 623
BseNI ACTGG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 76, 223
BshFI GGCC 3 cut(s) 675, 915, 1093
BsiHKAI GWGCWC 1 cut(s) 610
BsiSI CCGG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 800
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 3 cut(s) 675, 915, 1093
Bsp119I TTCGAA 1 cut(s) 975
Bsp1286I GDGCHC 1 cut(s) 610
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 3 cut(s) 124, 193, 706
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 2 cut(s) 436, 522
BspANI GGCC 3 cut(s) 675, 915, 1093
BspCNI CTCAG 4 cut(s) 337, 382, 585, 622
BspLI GGNNCC 1 cut(s) 765
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 975
BspTI CTTAAG 1 cut(s) 937
BsrBI CCGCTC 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 640, 670
BssMI GATC 3 cut(s) 124, 193, 706
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 641
Bst4CI ACNGT 4 cut(s) 174, 454, 474, 909
BstAFI CTTAAG 1 cut(s) 937
BstAPI GCANNNNNTGC 1 cut(s) 957
BstAUI TGTACA 1 cut(s) 859
BstBI TTCGAA 1 cut(s) 975
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 5 cut(s) 289, 345, 390, 593, 609
BstDSI CCRYGG 1 cut(s) 670
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 3 cut(s) 652, 889, 1107
BstKTI GATC 3 cut(s) 127, 196, 709
BstMBI GATC 3 cut(s) 124, 193, 706
BstMWI GCNNNNNNNGC 1 cut(s) 957
BstNI CCWGG 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 111, 639
BstSFI CTRYAG 2 cut(s) 93, 237
BstV1I GCAGC 2 cut(s) 76, 223
BstV2I GAAGAC 3 cut(s) 363, 381, 1052
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 3 cut(s) 675, 915, 1093
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 3 cut(s) 652, 889, 1107
BtsIMutI CAGTG 3 cut(s) 56, 360, 914
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 4 cut(s) 296, 637, 754, 764
Csp6I GTAC 5 cut(s) 262, 455, 470, 860, 934
CviAII CATG 3 cut(s) 136, 671, 1113
CviQI GTAC 5 cut(s) 262, 455, 470, 860, 934
DdeI CTNAG 5 cut(s) 289, 345, 390, 593, 609
DpnI GATC 3 cut(s) 126, 195, 708
DpnII GATC 3 cut(s) 124, 193, 706
EaeI YGGCCR 1 cut(s) 1091
Eco130I CCWWGG 1 cut(s) 670
Eco47I GGWCC 4 cut(s) 296, 637, 754, 764
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoO109I RGGNCCY 2 cut(s) 296, 637
EcoRII CCWGG 1 cut(s) 639
EcoT14I CCWWGG 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 3 cut(s) 139, 674, 1116
FaqI GGGAC 1 cut(s) 777
FatI CATG 3 cut(s) 135, 670, 1112
Fnu4HI GCNGC 4 cut(s) 65, 237, 437, 522
FokI GGATG 3 cut(s) 659, 896, 1094
Fsp4HI GCNGC 4 cut(s) 65, 237, 437, 522
FspBI CTAG 3 cut(s) 459, 572, 1086
GluI GCNGC 4 cut(s) 65, 237, 437, 522
HaeIII GGCC 3 cut(s) 675, 915, 1093
HapII CCGG 1 cut(s) 112
Hin1II CATG 3 cut(s) 139, 674, 1116
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HindIII AAGCTT 2 cut(s) 854, 1097
HinfI GANTC 4 cut(s) 271, 508, 889, 1075
HpaI GTTAAC 1 cut(s) 1105
HpaII CCGG 1 cut(s) 112
HphI GGTGA 3 cut(s) 203, 761, 1084
Hpy166II GTNNAC 1 cut(s) 1105
Hpy188I TCNGA 6 cut(s) 78, 108, 251, 421, 612, 810
Hpy8I GTNNAC 1 cut(s) 1105
HpyAV CCTTC 3 cut(s) 287, 783, 971
HpyCH4III ACNGT 4 cut(s) 174, 454, 474, 909
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 5 cut(s) 10, 135, 239, 840, 904
HpyF10VI GCNNNNNNNGC 1 cut(s) 957
HpyF3I CTNAG 5 cut(s) 289, 345, 390, 593, 609
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 3 cut(s) 139, 674, 1116
KspAI GTTAAC 1 cut(s) 1105
Kzo9I GATC 3 cut(s) 124, 193, 706
LmnI GCTCC 2 cut(s) 903, 1015
Lsp1109I GCAGC 2 cut(s) 76, 223
LweI GCATC 2 cut(s) 55, 637
MaeI CTAG 3 cut(s) 459, 572, 1086
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 309
MalI GATC 3 cut(s) 126, 195, 708
MbiI CCGCTC 1 cut(s) 436
MboI GATC 3 cut(s) 124, 193, 706
MboII GAAGA 7 cut(s) 266, 368, 386, 768, 884, 998, 1052
MfeI CAATTG 1 cut(s) 835
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 8 cut(s) 83, 322, 365, 514, 683, 835, 1010, 1044
MmeI TCCRAC 1 cut(s) 569
MnlI CCTC 9 cut(s) 521, 617, 628, 686, 723, 745, 754, 957, 1063
MroXI GAANNNNTTC 1 cut(s) 971
MseI TTAA 5 cut(s) 492, 513, 782, 938, 1104
MslI CAYNNNNRTG 1 cut(s) 51
MspCI CTTAAG 1 cut(s) 937
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 113, 641
MunI CAATTG 1 cut(s) 835
MvaI CCWGG 1 cut(s) 641
MwoI GCNNNNNNNGC 1 cut(s) 957
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 670
NdeII GATC 3 cut(s) 124, 193, 706
NlaIII CATG 3 cut(s) 139, 674, 1116
NlaIV GGNNCC 1 cut(s) 765
NmuCI GTSAC 1 cut(s) 309
NspV TTCGAA 1 cut(s) 975
PcsI WCGNNNNNNNCGW 2 cut(s) 981, 990
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 4 cut(s) 271, 508, 889, 1075
PkrI GCNGC 4 cut(s) 66, 238, 438, 523
PpuMI RGGWCCY 2 cut(s) 296, 637
PsiI TTATAA 1 cut(s) 798
Psp5II RGGWCCY 2 cut(s) 296, 637
Psp6I CCWGG 1 cut(s) 639
PspGI CCWGG 1 cut(s) 639
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 4 cut(s) 296, 637, 754, 764
PspPPI RGGWCCY 2 cut(s) 296, 637
PstI CTGCAG 1 cut(s) 241
RsaI GTAC 5 cut(s) 263, 456, 471, 861, 935
RsaNI GTAC 5 cut(s) 262, 455, 470, 860, 934
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 5 cut(s) 492, 513, 782, 938, 1104
SatI GCNGC 4 cut(s) 65, 237, 437, 522
Sau3AI GATC 3 cut(s) 124, 193, 706
Sau96I GGNCC 4 cut(s) 296, 637, 754, 764
ScrFI CCNGG 2 cut(s) 113, 641
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 2 cut(s) 55, 637
SfcI CTRYAG 2 cut(s) 93, 237
SfuI TTCGAA 1 cut(s) 975
SinI GGWCC 4 cut(s) 296, 637, 754, 764
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 406, 710, 937
SmoI CTYRAG 3 cut(s) 406, 710, 937
Sse9I AATT 8 cut(s) 83, 322, 365, 514, 683, 835, 1010, 1044
SsiI CCGC 2 cut(s) 436, 522
SspMI CTAG 3 cut(s) 459, 572, 1086
StyD4I CCNGG 2 cut(s) 111, 639
StyI CCWWGG 1 cut(s) 670
TaaI ACNGT 4 cut(s) 174, 454, 474, 909
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 975, 1063
TasI AATT 8 cut(s) 83, 322, 365, 514, 683, 835, 1010, 1044
TatI WGTACW 2 cut(s) 469, 859
TauI GCSGC 2 cut(s) 439, 524
TfiI GAWTC 4 cut(s) 271, 508, 889, 1075
Tru1I TTAA 5 cut(s) 492, 513, 782, 938, 1104
Tru9I TTAA 5 cut(s) 492, 513, 782, 938, 1104
TscAI CASTG 3 cut(s) 56, 367, 914
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 2 cut(s) 64, 236
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 18
TspGWI ACGGA 2 cut(s) 607, 921
TspRI CASTG 3 cut(s) 56, 367, 914
Vha464I CTTAAG 1 cut(s) 937
VpaK11BI GGWCC 4 cut(s) 296, 637, 754, 764
XagI CCTNNNNNAGG 1 cut(s) 798
XapI RAATTY 3 cut(s) 83, 322, 365
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 3 cut(s) 459, 572, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.