Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003909

Physical Location & Seq

Genomic Coordinates Reverse (-)

68126775 .. 68127606

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATGATACAGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACGCTTGTAAAATCCTTGGAAGATTTGATACAAGCTTGTAAAACGGCTGATGGCCGCGAAGACCTTGCCACTAAGAATGTTCTCCCCACACTCCTCCAGCTCATTCAATCTCTCTCGTACCCTTCTGATCAACACCTTCTGACGTTGTCTTTAAGACTTTTCAGAAATTTGTGTGCGGGGGAGGAAGCAAATCAAAACTCATTTGTTGAGCAAAATGGAGTTGCAATCATATCGAATGTTTTGAGTTCTGCAAACCTTTCTCTGGAGCCAGATTTTGGGATTATTTGTGTGGGTTTGCAAGTTCTGGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCACAGAAAAATTTGTTGCTCTTGCAAGAGTTTGTAGCCAAAAGACTTGTGGTCCTCTGTGTATGATTATCTACACGTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAGAGACTGCTGCTGCGGTTGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCTAGCCGACACAAAACCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atx10homo_assoc

Protein Analysis

236

Amino Acids

25.71

Weight (kDa)

4.69

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00231
fragaria_vesca	FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g12770 FvH4_7g12770
malus_domestica	MD02G1196600.v1.1 MD07G1124700.v1.1 MD07G1124800.v1.1 MD15G1435200.v1.1
prunus_persica	Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1
pyrus_communis	pycom02g16000
rosa_chinensis	RchiOBHm_Chr1g0313121 RchiOBHm_Chr1g0351801
rosa_laevigata	RLG00000028382 RLG00000030821 RLG00000030822
rosa_roxburghii	Rroxscaffold_4G00303530
rosa_rugosa	Rorug01G0221700
rosa_samantha	Rh1AG000900 Rh1AG235600 Rh1BG206000 Rh1CG003100 Rh1CG005300 Rh1CG220200 Rh1DG000700 Rh1DG233100
rosa_wichuraiana	Rw1G000010 Rw1G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	353, 554
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	133, 254, 605
AcoI	YGGCCR	2 cut(s)	130, 674
AcsI	RAATTY	4 cut(s)	244, 449, 560, 648
AcvI	CACGTG	1 cut(s)	516
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	3 cut(s)	33, 197, 629
AfiI	CCNNNNNNNGG	4 cut(s)	340, 353, 538, 554
AflIII	ACRYGT	2 cut(s)	513, 515
AgsI	TTSAA	2 cut(s)	185, 645
AhdI	GACNNNNNGTC	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	654, 686
AluBI	AGCT	2 cut(s)	113, 178
AluI	AGCT	2 cut(s)	113, 178
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	587
AoxI	GGCC	2 cut(s)	130, 674
ApeKI	GCWGC	5 cut(s)	392, 415, 430, 599, 602
ApoI	RAATTY	4 cut(s)	244, 449, 560, 648
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	491
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BbrPI	CACGTG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	5 cut(s)	379, 427, 442, 586, 589
BccI	CCATC	2 cut(s)	122, 518
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	4 cut(s)	125, 159, 291, 325
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	704
BisI	GCNGC	6 cut(s)	133, 393, 416, 431, 600, 603
BlsI	GCNGC	6 cut(s)	134, 394, 417, 432, 601, 604
Bme18I	GGWCC	1 cut(s)	491
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	345, 529, 663
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	4 cut(s)	32, 158, 362, 423
BsaAI	YACGTR	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 353, 538, 554
Bse1I	ACTGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	4 cut(s)	340, 353, 538, 554
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	5 cut(s)	379, 427, 442, 586, 589
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	132, 676
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	673
BslI	CCNNNNNNNGG	4 cut(s)	340, 353, 538, 554
BsmAI	GTCTC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	132, 676
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	3 cut(s)	133, 254, 605
BspANI	GGCC	2 cut(s)	132, 676
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	345, 529, 663
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	516
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 398
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	704
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	5 cut(s)	379, 427, 442, 586, 589
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	132, 676
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	32, 196, 628
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	3 cut(s)	32, 196, 628
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraIII	CACNNNGTG	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	2 cut(s)	130, 674
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	308, 420, 503, 706
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	6 cut(s)	133, 393, 416, 431, 600, 603
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	6 cut(s)	133, 393, 416, 431, 600, 603
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	6 cut(s)	133, 393, 416, 431, 600, 603
GsuI	CTGGAG	4 cut(s)	32, 158, 362, 423
HaeIII	GGCC	2 cut(s)	132, 676
HapII	CCGG	1 cut(s)	673
Hin1II	CATG	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	111
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	1 cut(s)	569
Hpy188I	TCNGA	3 cut(s)	205, 219, 242
Hpy188III	TCNNGA	3 cut(s)	49, 341, 645
HpyAV	CCTTC	3 cut(s)	210, 224, 574
HpyCH4IV	ACGT	2 cut(s)	221, 515
HpyCH4V	TGCA	8 cut(s)	19, 302, 329, 376, 395, 422, 464, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 398
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	221, 515
Hsp92II	CATG	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	62, 188, 326, 360, 368, 387, 524, 546, 686
Lsp1109I	GCAGC	5 cut(s)	379, 427, 442, 586, 589
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	2 cut(s)	221, 515
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	6 cut(s)	50, 110, 149, 430, 632, 661
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	6 cut(s)	244, 423, 449, 560, 632, 648
MnlI	CCTC	4 cut(s)	182, 253, 504, 652
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	59, 230
MspI	CCGG	1 cut(s)	673
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	392, 398
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	3 cut(s)	345, 529, 663
NspI	RCATGY	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	223
PflMI	CCANNNNNTGG	2 cut(s)	353, 554
PkrI	GCNGC	6 cut(s)	134, 394, 417, 432, 601, 604
PmaCI	CACGTG	1 cut(s)	516
PmlI	CACGTG	1 cut(s)	516
Ppu21I	YACGTR	1 cut(s)	516
PspCI	CACGTG	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	345, 529, 663
PspPI	GGNCC	1 cut(s)	491
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	3 cut(s)	33, 197, 629
RsaNI	GTAC	3 cut(s)	32, 196, 628
SaqAI	TTAA	2 cut(s)	59, 230
SatI	GCNGC	6 cut(s)	133, 393, 416, 431, 600, 603
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	115, 144, 180, 216, 224, 336, 518, 667
SfcI	CTRYAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	491
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	6 cut(s)	244, 423, 449, 560, 632, 648
SsiI	CCGC	3 cut(s)	133, 254, 605
SspMI	CTAG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	93
TaiI	ACGT	2 cut(s)	224, 518
TaqI	TCGA	1 cut(s)	311
TasI	AATT	6 cut(s)	244, 423, 449, 560, 632, 648
TauI	GCSGC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	59, 230
Tru9I	TTAA	2 cut(s)	59, 230
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	5 cut(s)	392, 415, 430, 599, 602
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	223
Van91I	CCANNNNNTGG	2 cut(s)	353, 554
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	4 cut(s)	244, 449, 560, 648
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.