Rh1AG000900

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003909
Physical Location & Seq
Reverse (-)
230700 .. 239404
8705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG000900.1

Sequence Viewer

Length: 1482 bp
ATGGATGATACAGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACACTTGTAAAATCCTTGGAAGATTTGATACAAGCTTGTAAAACGGCTGATGGTCGCGAAGACCTTGCCACTAAGAATGTTCTCCCCACAGTCCTCCAGCTCATTCAATCTCTCTCGTACCCTTCTGATCAACACCTTCTGACATTGTCTTTAAGGCTTTTAAGAAATCTGTGTGCGGGGGAGGAAGCAAATCAGAACTCATTTGTTGAGCAAAATGGAGTTGCAATCATATCGAATGTTTTGAGTTCTGCAAACCTTTCTCTGGAGCCAGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTCTGGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTGTGTATGATTATCTACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCTAGTTTACAATGTGTTGGTGGAAATGAGAATGGTGAAGATACAGAACGTGGGGAAGAGCCTTTCTCGAAAGAGCAAGAATTTTTGTTGGAAAACGTATCAGAGATCTTGAATGAGCGTCTCAATGAGATAACTGTTCCCAATGATTTTGCTTTGTGCGTTTATGGAATATTCAAGAACTCCATCAGAGTTCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTATTGAGATAGATGTCCTAGGATACTCGCTCACAATCTTGAGAGATATATGTGCCCAAGGAACACTAAGAGGATCAACAGAGAATACGATGGATGTTGTGGATATTCTGCTCTCCTCTGGTCTCATTGAATTACTTTTGTGTTTGCTTCGTGAACTTGAGCCGCCAGCAATAATTAGGAAATCTATCAACCAAGCTGAGGACCAAGATGGATCAAATTCTTCTACATCAAAACTATGTCCATACAAAGGTTTTCGGAGAGACATAGTTGGAGTCATTGGCAATTGTTTATATGGAAGGAAGCTTGTGCAAGATAAGATTAGGAGAAAGGACGGGCTTCTTCTGCTGTTGCAACAGTGTGTAACAGATGATGACAACCCGTACTTAAGGGAGTGGGGCATTTGGTGTGTGAGGAACTTGTTGGAGCGGAACCAAGAAAATCAGCAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTCGATGTGCCTGACCTTGCTCGACTTGGTCTTCGAGTAGAGATGAATCCAGAAACTGGACGTCCGAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

493

Amino Acids

54.44

Weight (kDa)

4.7

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 391 - 489 5.9e-34 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 888
AccB7I CCANNNNNTGG 3 cut(s) 353, 554, 1451
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 135
AciI CCGC 4 cut(s) 254, 1082, 1345, 1367
AclWI GGATC 2 cut(s) 1000, 1138
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
AcyI GRCGYC 1 cut(s) 1456
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 33, 197, 629, 1301
AfiI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
AflII CTTAAG 1 cut(s) 1303
AgsI TTSAA 6 cut(s) 185, 645, 796, 859, 1049, 1388
AhdI GACNNNNNGTC 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 113, 178, 1115, 1222, 1465
AluI AGCT 5 cut(s) 113, 178, 1115, 1222, 1465
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 809, 1046, 1173
AlwI GGATC 2 cut(s) 1000, 1138
AlwNI CAGNNNCTG 1 cut(s) 1451
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 5 cut(s) 392, 415, 430, 599, 602
ApoI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 1410, 1442
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 937
AspS9I GGNCC 2 cut(s) 491, 1120
AsuHPI GGTGA 2 cut(s) 569, 731
AvaII GGWCC 2 cut(s) 491, 1120
AvrII CCTAGG 1 cut(s) 937
BaeGI GKGCMC 1 cut(s) 976
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 3 cut(s) 144, 488, 1418
Bbv12I GWGCWC 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 5 cut(s) 379, 427, 442, 586, 589
BccI CCATC 5 cut(s) 122, 518, 875, 1003, 1121
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 291, 325
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 809, 1046, 1173
BfaI CTAG 2 cut(s) 687, 938
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 1303
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 789
BisI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
BlnI CCTAGG 1 cut(s) 937
BlsI GCNGC 6 cut(s) 394, 417, 432, 601, 604, 1083
Bme18I GGWCC 2 cut(s) 491, 1120
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 491, 1120
BmiI GGNNCC 4 cut(s) 345, 529, 663, 1349
BpiI GAAGAC 3 cut(s) 144, 488, 1418
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 4 cut(s) 32, 158, 362, 423
Bpu10I CCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 979, 1097
BsaHI GRCGYC 1 cut(s) 1456
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 93, 937, 976
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
Bse1I ACTGG 2 cut(s) 543, 1456
BseDI CCNNGG 3 cut(s) 93, 937, 976
BseGI GGATG 2 cut(s) 10, 1018
BseLI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BseMII CTCAG 2 cut(s) 456, 1107
BseNI ACTGG 2 cut(s) 543, 1456
BseRI GAGGAG 1 cut(s) 1024
BseSI GKGCMC 1 cut(s) 976
BseXI GCAGC 5 cut(s) 379, 427, 442, 586, 589
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 673
BslI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BsmAI GTCTC 3 cut(s) 809, 1046, 1173
BsmBI CGTCTC 1 cut(s) 809
BsnI GGCC 1 cut(s) 676
Bso31I GGTCTC 1 cut(s) 1046
Bsp1286I GDGCHC 2 cut(s) 29, 976
Bsp143I GATC 4 cut(s) 205, 789, 992, 1130
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 4 cut(s) 254, 1082, 1345, 1367
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 2 cut(s) 455, 1108
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 1478
BspLI GGNNCC 4 cut(s) 345, 529, 663, 1349
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 1000, 1138
BspQI GCTCTTC 1 cut(s) 735
BspTI CTTAAG 1 cut(s) 1303
BspTNI GGTCTC 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 1345
BsrI ACTGG 2 cut(s) 543, 1456
BssECI CCNNGG 3 cut(s) 93, 937, 976
BssMI GATC 4 cut(s) 205, 789, 992, 1130
BssNI GRCGYC 1 cut(s) 1456
BssT1I CCWWGG 3 cut(s) 93, 937, 976
Bst4CI ACNGT 3 cut(s) 169, 820, 1275
Bst6I CTCTTC 2 cut(s) 443, 735
BstACI GRCGYC 1 cut(s) 1456
BstAFI CTTAAG 1 cut(s) 1303
BstC8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
BstDEI CTNAG 5 cut(s) 150, 442, 878, 986, 1116
BstF5I GGATG 2 cut(s) 10, 1018
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 4 cut(s) 208, 792, 995, 1133
BstMAI GTCTC 3 cut(s) 809, 1046, 1173
BstMBI GATC 4 cut(s) 205, 789, 992, 1130
BstMWI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
BstNSI RCATGY 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 976
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 379, 427, 442, 586, 589
BstV2I GAAGAC 3 cut(s) 144, 488, 1418
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 10, 1018
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 1280
BtuMI TCGCGA 1 cut(s) 135
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
CaiI CAGNNNCTG 1 cut(s) 1451
CciI TCATGA 1 cut(s) 1478
Cfr13I GGNCC 2 cut(s) 491, 1120
CseI GACGC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 32, 196, 628, 1300
CviAII CATG 2 cut(s) 419, 1479
CviQI GTAC 4 cut(s) 32, 196, 628, 1300
DdeI CTNAG 5 cut(s) 150, 442, 878, 986, 1116
DpnI GATC 4 cut(s) 207, 791, 994, 1132
DpnII GATC 4 cut(s) 205, 789, 992, 1130
DraIII CACNNNGTG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 489
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 2 cut(s) 443, 735
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 443, 735
Eco130I CCWWGG 3 cut(s) 93, 937, 976
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 2 cut(s) 491, 1120
EcoT14I CCWWGG 3 cut(s) 93, 937, 976
ErhI CCWWGG 3 cut(s) 93, 937, 976
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 2 cut(s) 422, 1482
FatI CATG 2 cut(s) 418, 1478
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
FokI GGATG 2 cut(s) 17, 1025
Fsp4HI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
FspBI CTAG 2 cut(s) 687, 938
GluI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
GsuI CTGGAG 4 cut(s) 32, 158, 362, 423
HaeIII GGCC 1 cut(s) 676
HapII CCGG 1 cut(s) 673
HgaI GACGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 1456
Hin1II CATG 2 cut(s) 422, 1482
HindIII AAGCTT 3 cut(s) 111, 1220, 1463
HinfI GANTC 2 cut(s) 1191, 1441
HpaII CCGG 1 cut(s) 673
HphI GGTGA 2 cut(s) 569, 731
Hpy166II GTNNAC 2 cut(s) 692, 1073
Hpy188I TCNGA 8 cut(s) 205, 219, 273, 445, 787, 872, 1176, 1461
Hpy8I GTNNAC 2 cut(s) 692, 1073
HpyAV CCTTC 4 cut(s) 210, 224, 574, 1209
HpyCH4III ACNGT 3 cut(s) 169, 820, 1275
HpyCH4IV ACGT 3 cut(s) 733, 780, 1456
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
HpyF3I CTNAG 5 cut(s) 150, 442, 878, 986, 1116
HpySE526I ACGT 3 cut(s) 733, 780, 1456
Hsp92I GRCGYC 1 cut(s) 1456
Hsp92II CATG 2 cut(s) 422, 1482
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 205, 789, 992, 1130
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 343, 1342
Lsp1109I GCAGC 5 cut(s) 379, 427, 442, 586, 589
MaeI CTAG 2 cut(s) 687, 938
MaeII ACGT 3 cut(s) 733, 780, 1456
MaeIII GTNAC 1 cut(s) 1279
MalI GATC 4 cut(s) 207, 791, 994, 1132
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 4 cut(s) 205, 789, 992, 1130
MfeI CAATTG 1 cut(s) 1201
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 2 cut(s) 29, 976
MlyI GAGTC 1 cut(s) 1200
MmeI TCCRAC 4 cut(s) 753, 935, 1168, 1320
MnlI CCTC 9 cut(s) 182, 253, 504, 652, 887, 983, 1045, 1111, 1323
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 59, 230, 239, 1304, 1470
MspCI CTTAAG 1 cut(s) 1303
MspI CCGG 1 cut(s) 673
MunI CAATTG 1 cut(s) 1201
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
NdeII GATC 4 cut(s) 205, 789, 992, 1130
NlaIII CATG 2 cut(s) 422, 1482
NlaIV GGNNCC 4 cut(s) 345, 529, 663, 1349
NruI TCGCGA 1 cut(s) 135
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PagI TCATGA 1 cut(s) 1478
PciSI GCTCTTC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 1441
PflFI GACNNNGTC 2 cut(s) 223, 1422
PflMI CCANNNNNTGG 3 cut(s) 353, 554, 1451
PkrI GCNGC 6 cut(s) 394, 417, 432, 601, 604, 1083
PleI GAGTC 1 cut(s) 1199
PpsI GAGTC 1 cut(s) 1199
PspN4I GGNNCC 4 cut(s) 345, 529, 663, 1349
PspPI GGNCC 2 cut(s) 491, 1120
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 1451
PsuI RGATCY 1 cut(s) 789
PsyI GACNNNGTC 2 cut(s) 223, 1422
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 4 cut(s) 33, 197, 629, 1301
RsaNI GTAC 4 cut(s) 32, 196, 628, 1300
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 5 cut(s) 59, 230, 239, 1304, 1470
SatI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
Sau3AI GATC 4 cut(s) 205, 789, 992, 1130
Sau96I GGNCC 2 cut(s) 491, 1120
SchI GAGTC 1 cut(s) 1200
SduI GDGCHC 2 cut(s) 29, 976
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 491, 1120
SmlI CTYRAG 3 cut(s) 958, 1076, 1303
SmoI CTYRAG 3 cut(s) 958, 1076, 1303
SphI GCATGC 1 cut(s) 422
SsiI CCGC 4 cut(s) 254, 1082, 1345, 1367
SspI AATATT 1 cut(s) 855
SspMI CTAG 2 cut(s) 687, 938
StyI CCWWGG 3 cut(s) 93, 937, 976
TaaI ACNGT 3 cut(s) 169, 820, 1275
TaiI ACGT 3 cut(s) 736, 783, 1459
TaqI TCGA 5 cut(s) 311, 752, 1398, 1417, 1429
TauI GCSGC 1 cut(s) 1084
TfiI GAWTC 1 cut(s) 1441
Tru1I TTAA 5 cut(s) 59, 230, 239, 1304, 1470
Tru9I TTAA 5 cut(s) 59, 230, 239, 1304, 1470
TscAI CASTG 2 cut(s) 21, 1280
TseI GCWGC 5 cut(s) 392, 415, 430, 599, 602
TspDTI ATGAA 1 cut(s) 1454
TspRI CASTG 2 cut(s) 21, 1280
Tth111I GACNNNGTC 2 cut(s) 223, 1422
Van91I CCANNNNNTGG 3 cut(s) 353, 554, 1451
Vha464I CTTAAG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 491, 1120
XapI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 687, 938
ZraI GACGTC 1 cut(s) 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.