Rh1CG003100

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0003909
Physical Location & Seq
Reverse (-)
350732 .. 352337
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG003100.1

Sequence Viewer

Length: 1482 bp
ATGGATGATACCGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACGCTTGTAAAATCCTTGGAAGATTTGATACAAGCTTGTAAAACGGCTGATGGTCGCGAAGACCTTGCCACTAAGAATGTTCTCCCCACAGTCCTCCAGCTCATTCAATCTCTCTCGTACCCTTCTGATCAACACCTTCTGACGTTGTCTTTAAGGCTTTTAAGAAATCTGTGTGCGGGGGAGGAAGCAAATCAGAACTCATTTGTTGAGCAAAATGGAGTTGCAATCATATCGAATGTTTTGAGTCCTGCAAACCTTTCTCAGGAGCCAGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTCTGGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTGTGTATGATTATCTACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGGTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCTAGTTTACAATGTGTTGGTGGAAATGAGAATGGTGAAGATACAGAACATGGGGTAGAGCCTTTCTCGAAAGAGCAAGAATTTTTGTTGGAAAACGTATCAGAGATCTTGAATGAGCGTCTCAACGAGATAACTGTTCCCAATGATTTTGCTTTGTGCGTTTATGGAATATTCAAGAACTCCATCAGAGTTCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTGTTGAGATAGATGTCCTAGGATACTCGCTCACAATCTTGAGAGATATATGTGCCCAAGGAACACTAAGAGGATCAACAGAGAATACGATGGATGTTGTGGATATTCTGCTCTCCTCTGGTCTCATTGAATTACTTTTGTGTTTGCTTCGTGACCTTGAGCCGCCAGCAATAATTAGGAAATCTATCAACCAAGCTGAGGACCAAGATGGATCAAATTCTTCTACATCAAAACCATGTCCATACAAAGGTTTTCGGAGAGACATAGTTGGAGTCATTGGCAATTGTTTATATGGAAGGAATCTTGTGCAAGATGAGATTAGGAGAAAGGACGGGCTTCTTCTGCTGTTGCAACAGTGTGTAACAGATGATGACAACCCGTACTTAAGGGAGTGGGGCATTTGGTGTGTGAGGAACTTGTTGGAGCGGAACCAAGAAAATCAGCAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTCGATGTGCCCGACCTTGCTCGACTTGGTCTTCGAGCAGAGATGAATCCAGAAACTGGACGTCCGAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

493

Amino Acids

54.33

Weight (kDa)

4.63

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 391 - 489 4.3e-33 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 888
AccB7I CCANNNNNTGG 3 cut(s) 353, 554, 1451
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 135
AciI CCGC 5 cut(s) 12, 254, 1082, 1345, 1367
AclWI GGATC 2 cut(s) 1000, 1138
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
AcyI GRCGYC 1 cut(s) 1456
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 33, 197, 629, 1301
AfiI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
AflII CTTAAG 1 cut(s) 1303
AgsI TTSAA 6 cut(s) 185, 645, 796, 859, 1049, 1388
AhdI GACNNNNNGTC 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
AluBI AGCT 4 cut(s) 113, 178, 1115, 1465
AluI AGCT 4 cut(s) 113, 178, 1115, 1465
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 809, 1046, 1173
AlwI GGATC 2 cut(s) 1000, 1138
AlwNI CAGNNNCTG 2 cut(s) 920, 1451
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 5 cut(s) 392, 415, 430, 599, 602
ApoI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
ArsI GACNNNNNNTTYG 2 cut(s) 1410, 1442
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 937
AspS9I GGNCC 2 cut(s) 491, 1120
AsuHPI GGTGA 2 cut(s) 569, 731
AvaII GGWCC 2 cut(s) 491, 1120
AvrII CCTAGG 1 cut(s) 937
BaeGI GKGCMC 2 cut(s) 976, 1407
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 3 cut(s) 144, 488, 1418
Bbv12I GWGCWC 1 cut(s) 29
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 5 cut(s) 379, 427, 442, 586, 589
BccI CCATC 5 cut(s) 122, 518, 875, 1003, 1121
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 291, 325
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 3 cut(s) 809, 1046, 1173
BfaI CTAG 2 cut(s) 687, 938
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 1303
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 789
BisI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
BlnI CCTAGG 1 cut(s) 937
BlsI GCNGC 6 cut(s) 394, 417, 432, 601, 604, 1083
Bme18I GGWCC 2 cut(s) 491, 1120
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 491, 1120
BmiI GGNNCC 4 cut(s) 345, 529, 663, 1349
BpiI GAAGAC 3 cut(s) 144, 488, 1418
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 3 cut(s) 32, 158, 423
Bpu10I CCTNAGC 1 cut(s) 1116
BpuEI CTTGAG 2 cut(s) 979, 1097
BsaHI GRCGYC 1 cut(s) 1456
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 93, 937, 976
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
Bse1I ACTGG 2 cut(s) 543, 1456
BseDI CCNNGG 3 cut(s) 93, 937, 976
BseGI GGATG 2 cut(s) 10, 1018
BseLI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BseMII CTCAG 3 cut(s) 353, 456, 1107
BseNI ACTGG 2 cut(s) 543, 1456
BseRI GAGGAG 1 cut(s) 1024
BseSI GKGCMC 2 cut(s) 976, 1407
BseXI GCAGC 5 cut(s) 379, 427, 442, 586, 589
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 673
BslI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BsmAI GTCTC 3 cut(s) 809, 1046, 1173
BsmBI CGTCTC 1 cut(s) 809
BsnI GGCC 1 cut(s) 676
Bso31I GGTCTC 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 29, 976, 1407
Bsp143I GATC 4 cut(s) 205, 789, 992, 1130
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 5 cut(s) 12, 254, 1082, 1345, 1367
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 3 cut(s) 352, 455, 1108
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 1478
BspLI GGNNCC 4 cut(s) 345, 529, 663, 1349
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 1000, 1138
BspTI CTTAAG 1 cut(s) 1303
BspTNI GGTCTC 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 1345
BsrI ACTGG 2 cut(s) 543, 1456
BssECI CCNNGG 3 cut(s) 93, 937, 976
BssMI GATC 4 cut(s) 205, 789, 992, 1130
BssNI GRCGYC 1 cut(s) 1456
BssT1I CCWWGG 3 cut(s) 93, 937, 976
Bst4CI ACNGT 3 cut(s) 169, 820, 1275
Bst6I CTCTTC 1 cut(s) 443
BstACI GRCGYC 1 cut(s) 1456
BstAFI CTTAAG 1 cut(s) 1303
BstC8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
BstDEI CTNAG 6 cut(s) 150, 339, 442, 878, 986, 1116
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 2 cut(s) 10, 1018
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 4 cut(s) 208, 792, 995, 1133
BstMAI GTCTC 3 cut(s) 809, 1046, 1173
BstMBI GATC 4 cut(s) 205, 789, 992, 1130
BstMWI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
BstNSI RCATGY 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 2 cut(s) 976, 1407
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 379, 427, 442, 586, 589
BstV2I GAAGAC 3 cut(s) 144, 488, 1418
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 10, 1018
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 1280
BtuMI TCGCGA 1 cut(s) 135
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
CaiI CAGNNNCTG 2 cut(s) 920, 1451
CciI TCATGA 1 cut(s) 1478
Cfr13I GGNCC 2 cut(s) 491, 1120
CseI GACGC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 32, 196, 628, 1300
CviAII CATG 4 cut(s) 419, 734, 1155, 1479
CviQI GTAC 4 cut(s) 32, 196, 628, 1300
DdeI CTNAG 6 cut(s) 150, 339, 442, 878, 986, 1116
DpnI GATC 4 cut(s) 207, 791, 994, 1132
DpnII GATC 4 cut(s) 205, 789, 992, 1130
DraIII CACNNNGTG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 489
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 443
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 443
Eco130I CCWWGG 3 cut(s) 93, 937, 976
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 2 cut(s) 491, 1120
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoT14I CCWWGG 3 cut(s) 93, 937, 976
ErhI CCWWGG 3 cut(s) 93, 937, 976
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 4 cut(s) 422, 737, 1158, 1482
FatI CATG 4 cut(s) 418, 733, 1154, 1478
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
FokI GGATG 2 cut(s) 17, 1025
Fsp4HI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
FspBI CTAG 2 cut(s) 687, 938
GluI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
GsuI CTGGAG 3 cut(s) 32, 158, 423
HaeIII GGCC 1 cut(s) 676
HapII CCGG 1 cut(s) 673
HgaI GACGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 1456
Hin1II CATG 4 cut(s) 422, 737, 1158, 1482
HindIII AAGCTT 2 cut(s) 111, 1463
HinfI GANTC 4 cut(s) 322, 1191, 1219, 1441
HpaII CCGG 1 cut(s) 673
HphI GGTGA 2 cut(s) 569, 731
Hpy166II GTNNAC 1 cut(s) 692
Hpy188I TCNGA 8 cut(s) 205, 219, 273, 445, 787, 872, 1176, 1461
Hpy8I GTNNAC 1 cut(s) 692
HpyAV CCTTC 4 cut(s) 210, 224, 574, 1209
HpyCH4III ACNGT 3 cut(s) 169, 820, 1275
HpyCH4IV ACGT 3 cut(s) 221, 780, 1456
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
HpyF3I CTNAG 6 cut(s) 150, 339, 442, 878, 986, 1116
HpySE526I ACGT 3 cut(s) 221, 780, 1456
Hsp92I GRCGYC 1 cut(s) 1456
Hsp92II CATG 4 cut(s) 422, 737, 1158, 1482
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 205, 789, 992, 1130
LmnI GCTCC 2 cut(s) 343, 1342
Lsp1109I GCAGC 5 cut(s) 379, 427, 442, 586, 589
MaeI CTAG 2 cut(s) 687, 938
MaeII ACGT 3 cut(s) 221, 780, 1456
MaeIII GTNAC 2 cut(s) 1070, 1279
MalI GATC 4 cut(s) 207, 791, 994, 1132
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 4 cut(s) 205, 789, 992, 1130
MfeI CAATTG 1 cut(s) 1201
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 3 cut(s) 29, 976, 1407
MlyI GAGTC 2 cut(s) 331, 1200
MmeI TCCRAC 4 cut(s) 753, 935, 1168, 1320
MnlI CCTC 9 cut(s) 182, 253, 504, 652, 887, 983, 1045, 1111, 1323
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 59, 230, 239, 1304, 1470
MspCI CTTAAG 1 cut(s) 1303
MspI CCGG 1 cut(s) 673
MunI CAATTG 1 cut(s) 1201
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
NdeII GATC 4 cut(s) 205, 789, 992, 1130
NlaIII CATG 4 cut(s) 422, 737, 1158, 1482
NlaIV GGNNCC 4 cut(s) 345, 529, 663, 1349
NmuCI GTSAC 1 cut(s) 1070
NruI TCGCGA 1 cut(s) 135
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PagI TCATGA 1 cut(s) 1478
PcsI WCGNNNNNNNCGW 1 cut(s) 1404
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 1219, 1441
PflFI GACNNNGTC 2 cut(s) 223, 1422
PflMI CCANNNNNTGG 3 cut(s) 353, 554, 1451
PkrI GCNGC 6 cut(s) 394, 417, 432, 601, 604, 1083
PleI GAGTC 2 cut(s) 330, 1199
PpsI GAGTC 2 cut(s) 330, 1199
PspN4I GGNNCC 4 cut(s) 345, 529, 663, 1349
PspPI GGNCC 2 cut(s) 491, 1120
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 2 cut(s) 920, 1451
PsuI RGATCY 1 cut(s) 789
PsyI GACNNNGTC 2 cut(s) 223, 1422
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 4 cut(s) 33, 197, 629, 1301
RsaNI GTAC 4 cut(s) 32, 196, 628, 1300
SaqAI TTAA 5 cut(s) 59, 230, 239, 1304, 1470
SatI GCNGC 6 cut(s) 393, 416, 431, 600, 603, 1082
Sau3AI GATC 4 cut(s) 205, 789, 992, 1130
Sau96I GGNCC 2 cut(s) 491, 1120
SchI GAGTC 2 cut(s) 331, 1200
SduI GDGCHC 3 cut(s) 29, 976, 1407
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 2 cut(s) 491, 1120
SmlI CTYRAG 3 cut(s) 958, 1076, 1303
SmoI CTYRAG 3 cut(s) 958, 1076, 1303
SphI GCATGC 1 cut(s) 422
SsiI CCGC 5 cut(s) 12, 254, 1082, 1345, 1367
SspI AATATT 1 cut(s) 855
SspMI CTAG 2 cut(s) 687, 938
StyI CCWWGG 3 cut(s) 93, 937, 976
TaaI ACNGT 3 cut(s) 169, 820, 1275
TaiI ACGT 3 cut(s) 224, 783, 1459
TaqI TCGA 5 cut(s) 311, 752, 1398, 1417, 1429
TauI GCSGC 1 cut(s) 1084
TfiI GAWTC 2 cut(s) 1219, 1441
Tru1I TTAA 5 cut(s) 59, 230, 239, 1304, 1470
Tru9I TTAA 5 cut(s) 59, 230, 239, 1304, 1470
TscAI CASTG 2 cut(s) 21, 1280
TseFI GTSAC 1 cut(s) 1070
TseI GCWGC 5 cut(s) 392, 415, 430, 599, 602
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 1 cut(s) 1454
TspRI CASTG 2 cut(s) 21, 1280
Tth111I GACNNNGTC 2 cut(s) 223, 1422
Van91I CCANNNNNTGG 3 cut(s) 353, 554, 1451
Vha464I CTTAAG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 491, 1120
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 5 cut(s) 449, 560, 648, 764, 1135
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 687, 938
ZraI GACGTC 1 cut(s) 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.