Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003909

Physical Location & Seq

Genomic Coordinates Reverse (-)

17464630 .. 17465661

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATAATGCAGCACTGCAAGAGTGCTCTGTACCTCAACATGTTCTCCGGAAAATACTAAGTGCGGGAGACTCATCTACCCTCGTGAATTCGTTGGAAAACTTAATACAAGTTTGTAGAACAGCAGATGGTCGTGCAGGCCTTGCGTCTGAGGATATTCTTCCCCCTGCCATCCAGCTCATACAATCTCTCCCTTACCCTTCTGCTCACCATCCTCTCACATTATGTTTAAAGCTCGTAAGAAATCTTTGTGCGGGAGAGATTGCAAATCAGAACTCATTTGTTCAACATAATGGAGTTGCAATCGTATCGAACGTTTTCAACTCTGCGAGCCTTTCTTTGGAGCCGGATGCTGGGATCATTCGTATGGGGTTGCAAGTTCTTGCTAATGTTTCATTGGCTGGAGAACAACATCAGCGTGCAATTTGGCAGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atx10homo_assoc

Protein Analysis

147

Amino Acids

15.64

Weight (kDa)

5.88

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00231
fragaria_vesca	FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g12770 FvH4_7g12770
malus_domestica	MD02G1196600.v1.1 MD07G1124700.v1.1 MD07G1124800.v1.1 MD15G1435200.v1.1
prunus_persica	Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1
pyrus_communis	pycom02g16000
rosa_chinensis	RchiOBHm_Chr1g0313121 RchiOBHm_Chr1g0351801
rosa_laevigata	RLG00000028382 RLG00000030821 RLG00000030822
rosa_roxburghii	Rroxscaffold_4G00303530
rosa_rugosa	Rorug01G0221700
rosa_samantha	Rh1AG000900 Rh1AG235600 Rh1BG206000 Rh1CG003100 Rh1CG005300 Rh1CG220200 Rh1DG000700 Rh1DG233100
rosa_wichuraiana	Rw1G000010 Rw1G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	48
AciI	CCGC	2 cut(s)	65, 254
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	2 cut(s)	340, 353
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	2 cut(s)	287, 322
AluBI	AGCT	2 cut(s)	178, 235
AluI	AGCT	2 cut(s)	178, 235
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	365
Aor13HI	TCCGGA	1 cut(s)	48
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	11, 430
ApoI	RAATTY	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	200
BauI	CACGAG	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	122, 179, 219
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	12, 431
BlsI	GCNGC	2 cut(s)	13, 432
BmiI	GGNNCC	1 cut(s)	345
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	4 cut(s)	30, 60, 174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 353
BseAI	TCCGGA	1 cut(s)	48
BseGI	GGATG	3 cut(s)	171, 211, 355
BseLI	CCNNNNNNNGG	2 cut(s)	340, 353
BseMII	CTCAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	49, 347
BslI	CCNNNNNNNGG	2 cut(s)	340, 353
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	2 cut(s)	65, 254
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	365
BssMI	GATC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	83
Bst2BI	CACGAG	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	139, 331, 420
BstDEI	CTNAG	2 cut(s)	59, 150
BstF5I	GGATG	3 cut(s)	171, 211, 355
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	171, 211, 355
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	139, 331, 420
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	41
CviJI	RGCY	6 cut(s)	141, 178, 235, 333, 346, 401
CviKI_1	RGCY	6 cut(s)	141, 178, 235, 333, 346, 401
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	59, 150
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	231
Eco147I	AGGCCT	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	88
FaeI	CATG	1 cut(s)	44
FaiI	YATR	5 cut(s)	42, 182, 226, 291, 368
FatI	CATG	1 cut(s)	40
FauI	CCCGC	2 cut(s)	58, 247
Fnu4HI	GCNGC	2 cut(s)	12, 431
FokI	GGATG	3 cut(s)	158, 198, 362
Fsp4HI	GCNGC	2 cut(s)	12, 431
GluI	GCNGC	2 cut(s)	12, 431
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	2 cut(s)	49, 347
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	1 cut(s)	44
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	49, 347
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	151, 273
Hpy188III	TCNNGA	2 cut(s)	49, 85
HpyAV	CCTTC	1 cut(s)	210
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	7 cut(s)	11, 19, 137, 266, 302, 376, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	59, 150
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	44
Kpn2I	TCCGGA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	7 cut(s)	62, 123, 180, 188, 339, 360, 387
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	315
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	2 cut(s)	88, 423
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	4 cut(s)	45, 92, 145, 225
MroI	TCCGGA	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	2 cut(s)	104, 230
MslI	CAYNNNNRTG	2 cut(s)	365, 417
MspI	CCGG	2 cut(s)	49, 347
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	141
PciI	ACATGT	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	13, 432
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	40
Psp1406I	AACGTT	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	345
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	2 cut(s)	365, 417
SaqAI	TTAA	2 cut(s)	104, 230
SatI	GCNGC	2 cut(s)	12, 431
Sau3AI	GATC	1 cut(s)	357
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	37, 180, 237, 318
SfaNI	GCATC	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	365, 417
Sse9I	AATT	2 cut(s)	88, 423
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	2 cut(s)	65, 254
StuI	AGGCCT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	88, 423
Tru1I	TTAA	2 cut(s)	104, 230
Tru9I	TTAA	2 cut(s)	104, 230
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	11, 430
TspDTI	ATGAA	1 cut(s)	384
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.