Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003909

Physical Location & Seq

Genomic Coordinates Forward (+)

41186 .. 42017

Gene Structure 832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATGATACCGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACGCTTGTAAAATCCTTGGAAGATTTGATAAAAGCTTGTAAAACGGCTGTTGGTCGCGAAGACCTTGCCACTAAGAATGTTCTCCCCACAGTCCTCCAGCTCATTCAATCTCTCTCGCACCCTTCTGATCAACACCTTCTGACGTTGTCTTTAAGGCTTTTAAGAAATCTGTGTGCGGGGGAGGAAGCAAATCAGAACTCATTTGTTGAGCAAAATGGAGTTGCAACCATATCAAATGTTTTGAGTTCTGCAAACTTTTCTCTGGAGCCAGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTCTGGCTAATGCTGCATTAGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTCTGTATGATTATCTACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGTTTTGGAGAAGATTGGCACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCTAGCCGACGCAAAACCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atx10homo_assoc

Protein Analysis

235

Amino Acids

25.67

Weight (kDa)

5.43

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00231
fragaria_vesca	FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g12770 FvH4_7g12770
malus_domestica	MD02G1196600.v1.1 MD07G1124700.v1.1 MD07G1124800.v1.1 MD15G1435200.v1.1
prunus_persica	Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1
pyrus_communis	pycom02g16000
rosa_chinensis	RchiOBHm_Chr1g0313121 RchiOBHm_Chr1g0351801
rosa_laevigata	RLG00000028382 RLG00000030821 RLG00000030822
rosa_roxburghii	Rroxscaffold_4G00303530
rosa_rugosa	Rorug01G0221700
rosa_samantha	Rh1AG000900 Rh1AG235600 Rh1BG206000 Rh1CG003100 Rh1CG005300 Rh1CG220200 Rh1DG000700 Rh1DG233100
rosa_wichuraiana	Rw1G000010 Rw1G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	353, 554
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	12, 254
AcoI	YGGCCR	1 cut(s)	674
AcsI	RAATTY	3 cut(s)	449, 560, 648
AdeI	CACNNNGTG	1 cut(s)	554
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	3 cut(s)	353, 538, 554
AgsI	TTSAA	2 cut(s)	185, 645
AhdI	GACNNNNNGTC	1 cut(s)	489
AloI	GAACNNNNNNTCC	2 cut(s)	654, 686
AluBI	AGCT	3 cut(s)	113, 178, 401
AluI	AGCT	3 cut(s)	113, 178, 401
Alw21I	GWGCWC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	5 cut(s)	392, 415, 430, 599, 602
ApoI	RAATTY	3 cut(s)	449, 560, 648
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	144, 488
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	5 cut(s)	379, 427, 442, 586, 589
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	2 cut(s)	603, 704
BisI	GCNGC	5 cut(s)	393, 416, 431, 600, 603
BlsI	GCNGC	5 cut(s)	394, 417, 432, 601, 604
Bme18I	GGWCC	1 cut(s)	491
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	3 cut(s)	345, 529, 663
BpiI	GAAGAC	2 cut(s)	144, 488
BpmI	CTGGAG	4 cut(s)	32, 158, 362, 423
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 538, 554
Bse1I	ACTGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	353, 538, 554
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	543
BseXI	GCAGC	5 cut(s)	379, 427, 442, 586, 589
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	353, 538, 554
BsnI	GGCC	1 cut(s)	676
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	205
Bsp68I	TCGCGA	1 cut(s)	135
BspACI	CCGC	2 cut(s)	12, 254
BspANI	GGCC	1 cut(s)	676
BspCNI	CTCAG	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	345, 529, 663
BspMAI	CTGCAG	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	543
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	374, 420
BstDEI	CTNAG	2 cut(s)	150, 442
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 398, 634
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	2 cut(s)	603, 704
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	5 cut(s)	379, 427, 442, 586, 589
BstV2I	GAAGAC	2 cut(s)	144, 488
BsuRI	GGCC	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
BtuMI	TCGCGA	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	374, 420
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	419
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	150, 442
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
DraIII	CACNNNGTG	1 cut(s)	554
DriI	GACNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	422
FaiI	YATR	4 cut(s)	308, 420, 503, 706
FatI	CATG	1 cut(s)	418
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	5 cut(s)	393, 416, 431, 600, 603
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	5 cut(s)	393, 416, 431, 600, 603
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	5 cut(s)	393, 416, 431, 600, 603
GsuI	CTGGAG	4 cut(s)	32, 158, 362, 423
HaeIII	GGCC	1 cut(s)	676
HapII	CCGG	1 cut(s)	673
HgaI	GACGC	1 cut(s)	702
Hin1II	CATG	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	111
HpaII	CCGG	1 cut(s)	673
HphI	GGTGA	1 cut(s)	569
Hpy188I	TCNGA	4 cut(s)	205, 219, 273, 445
Hpy188III	TCNNGA	4 cut(s)	49, 134, 341, 645
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	3 cut(s)	210, 224, 574
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	9 cut(s)	19, 302, 329, 376, 395, 422, 464, 545, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 398, 634
HpyF3I	CTNAG	2 cut(s)	150, 442
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	5 cut(s)	379, 427, 442, 586, 589
MaeI	CTAG	1 cut(s)	687
MaeII	ACGT	1 cut(s)	221
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	7 cut(s)	50, 110, 149, 430, 493, 632, 661
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	5 cut(s)	423, 449, 560, 632, 648
MnlI	CCTC	4 cut(s)	182, 253, 504, 652
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	3 cut(s)	59, 230, 239
MspI	CCGG	1 cut(s)	673
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	3 cut(s)	392, 398, 634
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	3 cut(s)	345, 529, 663
NruI	TCGCGA	1 cut(s)	135
NspI	RCATGY	1 cut(s)	422
PaeI	GCATGC	1 cut(s)	422
PdmI	GAANNNNTTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	223
PflMI	CCANNNNNTGG	2 cut(s)	353, 554
PkrI	GCNGC	5 cut(s)	394, 417, 432, 601, 604
PspN4I	GGNNCC	3 cut(s)	345, 529, 663
PspPI	GGNCC	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	607
PsyI	GACNNNGTC	1 cut(s)	223
RruI	TCGCGA	1 cut(s)	135
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	59, 230, 239
SatI	GCNGC	5 cut(s)	393, 416, 431, 600, 603
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	7 cut(s)	115, 144, 180, 216, 224, 403, 667
SfcI	CTRYAG	2 cut(s)	603, 704
SinI	GGWCC	1 cut(s)	491
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	5 cut(s)	423, 449, 560, 632, 648
SsiI	CCGC	2 cut(s)	12, 254
SspMI	CTAG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	224
TasI	AATT	5 cut(s)	423, 449, 560, 632, 648
Tru1I	TTAA	3 cut(s)	59, 230, 239
Tru9I	TTAA	3 cut(s)	59, 230, 239
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	5 cut(s)	392, 415, 430, 599, 602
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	223
Van91I	CCANNNNNTGG	2 cut(s)	353, 554
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	3 cut(s)	449, 560, 648
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.