AT4G00231

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003909
Physical Location & Seq
Forward (+)
97476 .. 99593
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00231.1

Sequence Viewer

Length: 1428 bp
ATGGAAGCTTCTCTACCGGAAGAGGTGCTTCAGCCGCTTCTACATGCTTCAGATTTATCATACTCTCTAGAAGATTGCTTGAAATTTCTTCTAGAGTCTTCCAAGACCGATTCAGGTCGTTCCGATCTCGCTTCCAAGTCTATACTTCCGTCGATCCTCCGTCTTCTTCAGCTTCTTCCTTACCCATCTTCCCGCCATTATCTGAATCTCTCTCTGAAGGTCCTTCGAAACCTCTGCGCAGGTGAGGTTTCGAATCAGAACTCTTTCGTCGATCATGACGGCTCTGCTATCGTCTCCGACTTGCTTGATTCCGCCATTGCGGATTTCGAGACAGTTAGGTTCGGATTACAGGTTCTAGCGAACGTTGTATTGTTCGGAGAGAAACGTCAGAGAGATGTGTGGCTCCGATTTTACCCGGAGAGGTTCTTATCAATCGCTAAGATTAGGAAACGTGAAACATTTGATCCTCTGTGTATGATTTTGTATACTTGCGTTGATGGAAGCTCAGAGATTGCTTCAGAGCTTTGTAGCTGTCAAGGGCTCACCATCATCGCTGAAACTCTACGGACTTCCTCTTCCGTTGGGTCTGTGGAGGATTATTGGCTCAAGTTACTGGTTTCGAGAATCTGTGTTGAAGATGGTTACTTCCTCAAGCTCTTCTCTAAATTATACGAAGATGCTGAAAATGAGATATTTTCATCAGAGCAAGCCTTTCTTGTGAGGATGGTGTCTGATATTGCTAATGAGCGGATAGGAAAAGTGTCAATCCCCAAGGATACAGCTTGTTCGATTCTCGGATTGTTTAGGCAATCAGTTGATGTTTTTGATTTTGTTTCGGGTGAAAGATCGGAGCTTCCAACGGGTTCAACTATAGTAGATGTGATGGGCTACTCTCTGGTGATAATAAGGGATGCTTGTGCTGGAGGACGTCTTGAAGAACTCAAGGAGGACAACAAGGATTCAGGTGATACTGTTGAATTGCTCTTGTCCTCTGGACTAATAGAACTTCTCCTTGATCTGCTTAGTAAACTTGATCCTCCAACAACAATAAAGAAGGCTTTAAACCAGAGTCCTAGTTCTTCTTCTTCTTCATTAAAGCCGTGTCCTTACAGAGGATTCAGGAGAGATATTGTGTCGGTGATTGGGAACTGCGCGTACAGAAGAAAAGAGGTACAAGATGAGATCAGGGAGAGAGATGGGCTCTTTTTAATGCTGCAGCAGTGTGTGACCGATGATGAGAACCCGTTCTTGAGAGAATGGGGCTTGTGGTGTATAAGAAATTTACTGGAAGGGAACCCTGAAAACCAGGAAGTAGTGGCTGAGTTGGAGATTAAAGGCTCTGTGGATGTGCCTCAACTCCGTGAAATTGGTCTCAGGGTTGAAATTGATCCTAAAACAGCCAGGCCAAAGCTTGTCAATGACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

475

Amino Acids

53.17

Weight (kDa)

4.8

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 373 - 465 4.9e-37 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 230
AatII GACGTC 1 cut(s) 931
Acc16I TGCGCA 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 230
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 485
AccII CGCG 1 cut(s) 1154
AciI CCGC 5 cut(s) 35, 193, 312, 320, 748
AclI AACGTT 1 cut(s) 363
AclWI GGATC 4 cut(s) 148, 458, 1028, 1382
AcsI RAATTY 2 cut(s) 83, 1279
AcuI CTGAAG 5 cut(s) 14, 33, 152, 236, 501
AcyI GRCGYC 1 cut(s) 928
AfaI GTAC 2 cut(s) 1157, 1173
AfiI CCNNNNNNNGG 1 cut(s) 1112
AgsI TTSAA 6 cut(s) 82, 635, 867, 935, 977, 1382
AjnI CCWGG 2 cut(s) 1305, 1400
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 9 cut(s) 8, 172, 504, 523, 531, 655, 782, 853, 1411
AluI AGCT 9 cut(s) 8, 172, 504, 523, 531, 655, 782, 853, 1411
Alw26I GTCTC 3 cut(s) 298, 323, 1376
AlwI GGATC 4 cut(s) 148, 458, 1028, 1382
AoxI GGCC 1 cut(s) 1403
ApeKI GCWGC 2 cut(s) 1213, 1216
ApoI RAATTY 2 cut(s) 83, 1279
Asp700I GAANNNNTTC 2 cut(s) 263, 1244
AspLEI GCGC 2 cut(s) 239, 1154
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 6 cut(s) 254, 535, 851, 910, 977, 1150
AsuII TTCGAA 2 cut(s) 226, 251
AvaII GGWCC 1 cut(s) 220
BanII GRGCYC 2 cut(s) 543, 1203
BarI GAAGNNNNNNTAC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 90, 155
BbvI GCAGC 2 cut(s) 1200, 1228
BccI CCATC 7 cut(s) 193, 491, 554, 632, 718, 877, 1190
BceAI ACGGC 2 cut(s) 295, 1084
BcgI CGANNNNNNTGC 2 cut(s) 216, 250
BciT130I CCWGG 2 cut(s) 1307, 1402
BciVI GTATCC 1 cut(s) 769
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 298, 323, 1376
BfaI CTAG 4 cut(s) 68, 92, 356, 1074
BfmI CTRYAG 2 cut(s) 870, 1214
BfuAI ACCTGC 1 cut(s) 230
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 3 cut(s) 35, 1214, 1217
BlsI GCNGC 3 cut(s) 36, 1215, 1218
Bme1390I CCNGG 3 cut(s) 416, 1307, 1402
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 404, 1295
BmrFI CCNGG 3 cut(s) 416, 1307, 1402
BmsI GCATC 2 cut(s) 667, 901
BpiI GAAGAC 2 cut(s) 90, 155
BplI GAGNNNNNCTC 2 cut(s) 1185, 1217
BpmI CTGGAG 1 cut(s) 942
Bpu14I TTCGAA 2 cut(s) 226, 251
BpuEI CTTGAG 4 cut(s) 590, 635, 926, 1270
BpuMI CCSGG 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 928
BsaI GGTCTC 1 cut(s) 1376
BsaJI CCNNGG 1 cut(s) 771
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 1112
Bse1I ACTGG 2 cut(s) 618, 1290
Bse3DI GCAATG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 1307, 1402
BseDI CCNNGG 1 cut(s) 771
BseGI GGATG 3 cut(s) 729, 916, 1351
BseLI CCNNNNNNNGG 1 cut(s) 1112
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 519, 1311, 1387
BseNI ACTGG 2 cut(s) 618, 1290
BseXI GCAGC 2 cut(s) 1200, 1228
Bsh1236I CGCG 1 cut(s) 1154
BshFI GGCC 1 cut(s) 1405
BsiSI CCGG 2 cut(s) 17, 416
BslI CCNNNNNNNGG 1 cut(s) 1112
BsmAI GTCTC 3 cut(s) 298, 323, 1376
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 1405
Bso31I GGTCTC 1 cut(s) 1376
Bsp119I TTCGAA 2 cut(s) 226, 251
Bsp1286I GDGCHC 2 cut(s) 543, 1203
Bsp143I GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
BspACI CCGC 5 cut(s) 35, 193, 312, 320, 748
BspANI GGCC 1 cut(s) 1405
BspCNI CTCAG 3 cut(s) 518, 1312, 1386
BspFNI CGCG 1 cut(s) 1154
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 2 cut(s) 404, 1295
BspMAI CTGCAG 1 cut(s) 1218
BspMI ACCTGC 1 cut(s) 230
BspPI GGATC 4 cut(s) 148, 458, 1028, 1382
BspQI GCTCTTC 1 cut(s) 662
BspT104I TTCGAA 2 cut(s) 226, 251
BspTNI GGTCTC 1 cut(s) 1376
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 2 cut(s) 618, 1290
BssECI CCNNGG 1 cut(s) 771
BssMI GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
BssNAI GTATAC 1 cut(s) 486
BssNI GRCGYC 1 cut(s) 928
BssT1I CCWWGG 1 cut(s) 771
Bst1107I GTATAC 1 cut(s) 486
Bst2UI CCWGG 2 cut(s) 1307, 1402
Bst4CI ACNGT 2 cut(s) 334, 973
Bst6I CTCTTC 3 cut(s) 15, 580, 662
BstACI GRCGYC 1 cut(s) 928
BstBI TTCGAA 2 cut(s) 226, 251
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 5 cut(s) 438, 505, 1022, 1320, 1373
BstENI CCTNNNNNAGG 1 cut(s) 1110
BstF5I GGATG 3 cut(s) 729, 916, 1351
BstFNI CGCG 1 cut(s) 1154
BstHHI GCGC 2 cut(s) 239, 1154
BstKTI GATC 9 cut(s) 127, 156, 274, 466, 848, 1018, 1036, 1185, 1390
BstMAI GTCTC 3 cut(s) 298, 323, 1376
BstMBI GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 1307, 1402
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 414, 1305, 1400
BstSFI CTRYAG 2 cut(s) 870, 1214
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 2 cut(s) 1200, 1228
BstV2I GAAGAC 2 cut(s) 90, 155
BstZ17I GTATAC 1 cut(s) 486
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 1405
BtgZI GCGATG 1 cut(s) 535
BtsCI GGATG 3 cut(s) 729, 916, 1351
BtsI GCAGTG 1 cut(s) 1226
BtsIMutI CAGTG 1 cut(s) 1226
BveI ACCTGC 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 708
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 239, 1154
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 1156, 1172
CviAII CATG 2 cut(s) 44, 275
CviQI GTAC 2 cut(s) 1156, 1172
DdeI CTNAG 5 cut(s) 438, 505, 1022, 1320, 1373
DpnI GATC 9 cut(s) 126, 155, 273, 465, 847, 1017, 1035, 1184, 1389
DpnII GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
DraI TTTAAA 1 cut(s) 1062
Eam1104I CTCTTC 3 cut(s) 15, 580, 662
EarI CTCTTC 3 cut(s) 15, 580, 662
EciI GGCGGA 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 2 cut(s) 543, 1203
Eco31I GGTCTC 1 cut(s) 1376
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 5 cut(s) 14, 33, 152, 236, 501
EcoNI CCTNNNNNAGG 1 cut(s) 1110
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 1305, 1400
EcoT14I CCWWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 543, 1203
ErhI CCWWGG 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 47, 278
FaiI YATR 9 cut(s) 45, 61, 143, 276, 476, 486, 670, 872, 1274
FalI AAGNNNNNCTT 6 cut(s) 12, 44, 699, 731, 898, 930
FatI CATG 2 cut(s) 43, 274
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 35, 1214, 1217
FokI GGATG 3 cut(s) 736, 923, 1358
FriOI GRGCYC 2 cut(s) 543, 1203
Fsp4HI GCNGC 3 cut(s) 35, 1214, 1217
FspBI CTAG 4 cut(s) 68, 92, 356, 1074
FspI TGCGCA 1 cut(s) 238
GlaI GCGC 2 cut(s) 238, 1153
GluI GCNGC 3 cut(s) 35, 1214, 1217
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 1 cut(s) 1405
HapII CCGG 2 cut(s) 17, 416
HhaI GCGC 2 cut(s) 239, 1154
Hin1I GRCGYC 1 cut(s) 928
Hin1II CATG 2 cut(s) 47, 278
Hin6I GCGC 2 cut(s) 237, 1152
HinP1I GCGC 2 cut(s) 237, 1152
HindIII AAGCTT 2 cut(s) 6, 1409
HpaII CCGG 2 cut(s) 17, 416
HphI GGTGA 6 cut(s) 254, 535, 851, 910, 977, 1150
Hpy166II GTNNAC 2 cut(s) 486, 1028
Hpy188III TCNNGA 9 cut(s) 68, 92, 275, 328, 621, 932, 993, 1120, 1249
Hpy8I GTNNAC 2 cut(s) 486, 1028
Hpy99I CGWCG 2 cut(s) 154, 272
HpyAV CCTTC 4 cut(s) 211, 233, 1048, 1283
HpyCH4III ACNGT 2 cut(s) 334, 973
HpyCH4IV ACGT 4 cut(s) 363, 385, 451, 928
HpyCH4V TGCA 1 cut(s) 1216
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 5 cut(s) 438, 505, 1022, 1320, 1373
HpySE526I ACGT 4 cut(s) 363, 385, 451, 928
Hsp92I GRCGYC 1 cut(s) 928
Hsp92II CATG 2 cut(s) 47, 278
HspAI GCGC 2 cut(s) 237, 1152
Kzo9I GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
LguI GCTCTTC 1 cut(s) 662
LmnI GCTCC 2 cut(s) 408, 850
Lsp1109I GCAGC 2 cut(s) 1200, 1228
LweI GCATC 2 cut(s) 667, 901
MaeI CTAG 4 cut(s) 68, 92, 356, 1074
MaeII ACGT 4 cut(s) 363, 385, 451, 928
MaeIII GTNAC 3 cut(s) 609, 641, 1225
MalI GATC 9 cut(s) 126, 155, 273, 465, 847, 1017, 1035, 1184, 1389
MbiI CCGCTC 1 cut(s) 748
MboI GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
MhlI GDGCHC 2 cut(s) 543, 1203
MluCI AATT 6 cut(s) 83, 665, 977, 1279, 1365, 1383
MlyI GAGTC 2 cut(s) 104, 1078
MmeI TCCRAC 4 cut(s) 321, 881, 1064, 1305
MroXI GAANNNNTTC 2 cut(s) 263, 1244
MseI TTAA 4 cut(s) 1061, 1094, 1208, 1332
MspI CCGG 2 cut(s) 17, 416
MspR9I CCNGG 3 cut(s) 416, 1307, 1402
MvaI CCWGG 2 cut(s) 1307, 1402
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 416
NdeII GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
NlaIII CATG 2 cut(s) 47, 278
NlaIV GGNNCC 2 cut(s) 404, 1295
NmuCI GTSAC 1 cut(s) 1225
NsbI TGCGCA 1 cut(s) 238
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 2 cut(s) 226, 251
PagI TCATGA 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 662
PdmI GAANNNNTTC 2 cut(s) 263, 1244
PfeI GAWTC 8 cut(s) 110, 205, 253, 308, 624, 790, 959, 1116
PkrI GCNGC 3 cut(s) 36, 1215, 1218
PleI GAGTC 2 cut(s) 103, 1077
PpsI GAGTC 2 cut(s) 103, 1077
PpuMI RGGWCCY 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 363
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 1305, 1400
PspGI CCWGG 2 cut(s) 1305, 1400
PspN4I GGNNCC 2 cut(s) 404, 1295
PspPI GGNCC 1 cut(s) 220
PspPPI RGGWCCY 1 cut(s) 220
PsrI GAACNNNNNNTAC 2 cut(s) 1139, 1171
PstI CTGCAG 1 cut(s) 1218
RsaI GTAC 2 cut(s) 1157, 1173
RsaNI GTAC 2 cut(s) 1156, 1172
SapI GCTCTTC 1 cut(s) 662
SaqAI TTAA 4 cut(s) 1061, 1094, 1208, 1332
SatI GCNGC 3 cut(s) 35, 1214, 1217
Sau3AI GATC 9 cut(s) 124, 153, 271, 463, 845, 1015, 1033, 1182, 1387
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 104, 1078
ScrFI CCNGG 3 cut(s) 416, 1307, 1402
SduI GDGCHC 2 cut(s) 543, 1203
SfaNI GCATC 2 cut(s) 667, 901
SfcI CTRYAG 2 cut(s) 870, 1214
SfuI TTCGAA 2 cut(s) 226, 251
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 4 cut(s) 605, 650, 941, 1249
SmoI CTYRAG 4 cut(s) 605, 650, 941, 1249
Sse9I AATT 6 cut(s) 83, 665, 977, 1279, 1365, 1383
SsiI CCGC 5 cut(s) 35, 193, 312, 320, 748
SspMI CTAG 4 cut(s) 68, 92, 356, 1074
StyD4I CCNGG 3 cut(s) 414, 1305, 1400
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 334, 973
TaiI ACGT 4 cut(s) 366, 388, 454, 931
TaqI TCGA 7 cut(s) 152, 226, 251, 270, 327, 620, 788
TaqII GACCGA 2 cut(s) 122, 1244
TasI AATT 6 cut(s) 83, 665, 977, 1279, 1365, 1383
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 8 cut(s) 110, 205, 253, 308, 624, 790, 959, 1116
Tru1I TTAA 4 cut(s) 1061, 1094, 1208, 1332
Tru9I TTAA 4 cut(s) 1061, 1094, 1208, 1332
TscAI CASTG 1 cut(s) 1226
TseFI GTSAC 1 cut(s) 1225
TseI GCWGC 2 cut(s) 1213, 1216
Tsp45I GTSAC 1 cut(s) 1225
TspDTI ATGAA 2 cut(s) 687, 1080
TspGWI ACGGA 5 cut(s) 138, 149, 568, 580, 1349
TspRI CASTG 1 cut(s) 1226
VpaK11BI GGWCC 1 cut(s) 220
XagI CCTNNNNNAGG 1 cut(s) 1110
XapI RAATTY 2 cut(s) 83, 1279
XbaI TCTAGA 2 cut(s) 67, 91
XceI RCATGY 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 485
XmnI GAANNNNTTC 2 cut(s) 263, 1244
XspI CTAG 4 cut(s) 68, 92, 356, 1074
ZraI GACGTC 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.