MD07G1124700.v1.1

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0003909
Physical Location & Seq
Reverse (-)
17463440 .. 17464628
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1124700.v1.1.491

Sequence Viewer

Length: 933 bp
ATGGTTATCTATGCTTGTGGTGACGGAAGCCCCGAACTGTTTGCCCAACTTTGCAGTGCTCGTGGAATAACTGTCGTGAAAGAGATTGTAAAGACTACCAGCTGCTTAGAAGGACCTTACTTCCAGTCACTTTTCTCTAATTTAGGTTTTGTGGGTGCTACTGAGAATGGTGAAGACACTGAATTTAGAGTTGACGCTTTCTCAGCCGAGCAAGCATTTTTCTTGAGATGCATGTCTGATATCTTGAACGAGCGACTTCAAGAGATTACTGTGCCCAGTGATTTAGCTTTCTGTGTTTTTGGGATATTTAAGAAATCTATTGGGATTCTTAAATGTGCCACAAGAGGCAAGTCTGGACTTCCAACGGGTTCTAGTATGATAGATGTTCTAGGATATTCACTCACAATCCTGAGAGATATATGCGCTCAGAAGTCCGTAAGAGGCTCTAACGAGGACCTGGGGGATGCTGTTGATGTTTTGCTATCCCATGGCCTCATAGAATTACTTTTATGTTTGCTTCGTGATCTTGAGCCGACATCAGTAATGAGGAAAGCTATCAAGCAAGGTGAGGAACGAGATGGACCAAAGTCTTCTTCCTTAAAACCCTGCCCGTATAAAGGATTTCGGAGAGATATGGTGGCCGTCGTTGGCAATTGCACGTATAAAAGGAAGCTTGTACAAGATGAGATTAGACAAAAGGACGGGATTCTTCTGCTCTTGCAACAGTGCGGCCTTGATGACGACAATCCGTACTTAAGGGAGTGGGCCATTTGGTGTGTCAGGAACTTATTCGAAGGCAACGAAGAAAACGAAAGGGTAGTGGCTGAATTGGAGCTTCAAGGGGCTGTTGATACACCTGAAATTGCTCAACTTGGCCTTCGGGTAGAGGCAAATCCTAATACTAGAAGGCCAAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

311

Amino Acids

34.31

Weight (kDa)

5.09

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 208 - 300 2.5e-34 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 2 cut(s) 678, 752
AfiI CCNNNNNNNGG 1 cut(s) 617
AflII CTTAAG 1 cut(s) 754
AgsI TTSAA 3 cut(s) 247, 260, 839
AjnI CCWGG 1 cut(s) 456
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AluBI AGCT 6 cut(s) 102, 287, 554, 673, 835, 916
AluI AGCT 6 cut(s) 102, 287, 554, 673, 835, 916
Alw21I GWGCWC 1 cut(s) 61
AoxI GGCC 6 cut(s) 490, 639, 730, 765, 874, 908
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 788
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 4 cut(s) 113, 454, 581, 765
AsuHPI GGTGA 3 cut(s) 32, 182, 578
AsuII TTCGAA 1 cut(s) 792
AvaII GGWCC 3 cut(s) 113, 454, 581
BaeGI GKGCMC 1 cut(s) 276
BauI CACGAG 1 cut(s) 60
BbsI GAAGAC 2 cut(s) 180, 582
Bbv12I GWGCWC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 572
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 1 cut(s) 458
BfaI CTAG 3 cut(s) 372, 389, 903
BfrI CTTAAG 1 cut(s) 754
BisI GCNGC 2 cut(s) 103, 730
BlsI GCNGC 2 cut(s) 104, 731
Bme1390I CCNGG 1 cut(s) 458
Bme18I GGWCC 3 cut(s) 113, 454, 581
BmgT120I GGNCC 4 cut(s) 113, 454, 581, 765
BmrFI CCNGG 1 cut(s) 458
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 218, 454
BmuI ACTGGG 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 180, 582
Bpu14I TTCGAA 1 cut(s) 792
BpuEI CTTGAG 2 cut(s) 244, 548
BsaAI YACGTR 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 457, 487
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse1I ACTGG 2 cut(s) 124, 276
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 457, 487
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMII CTCAG 4 cut(s) 153, 216, 401, 440
BseNI ACTGG 2 cut(s) 124, 276
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 1 cut(s) 89
BshFI GGCC 6 cut(s) 492, 641, 732, 767, 876, 910
BsiHKAI GWGCWC 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 617
BsnI GGCC 6 cut(s) 492, 641, 732, 767, 876, 910
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 61, 276
Bsp1407I TGTACA 1 cut(s) 676
Bsp143I GATC 1 cut(s) 523
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 1 cut(s) 729
BspANI GGCC 6 cut(s) 492, 641, 732, 767, 876, 910
BspCNI CTCAG 4 cut(s) 154, 215, 402, 439
BspHI TCATGA 1 cut(s) 929
BspT104I TTCGAA 1 cut(s) 792
BspTI CTTAAG 1 cut(s) 754
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 2 cut(s) 124, 276
BssECI CCNNGG 2 cut(s) 457, 487
BssMI GATC 1 cut(s) 523
BssSI CACGAG 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 487
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 4 cut(s) 39, 73, 271, 726
BstAFI CTTAAG 1 cut(s) 754
BstAUI TGTACA 1 cut(s) 676
BstBAI YACGTR 1 cut(s) 660
BstBI TTCGAA 1 cut(s) 792
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 5 cut(s) 106, 162, 202, 410, 426
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 1 cut(s) 526
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 2 cut(s) 203, 212
BstNI CCWGG 1 cut(s) 458
BstNSI RCATGY 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 180, 582
BsuRI GGCC 6 cut(s) 492, 641, 732, 767, 876, 910
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 469
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 4 cut(s) 61, 177, 283, 731
Cac8I GCNNGC 1 cut(s) 213
CciI TCATGA 1 cut(s) 929
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 4 cut(s) 113, 454, 581, 765
CseI GACGC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 677, 751
CviAII CATG 3 cut(s) 232, 488, 930
CviQI GTAC 2 cut(s) 677, 751
DdeI CTNAG 5 cut(s) 106, 162, 202, 410, 426
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 487
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 3 cut(s) 113, 454, 581
EcoO109I RGGNCCY 2 cut(s) 113, 454
EcoRII CCWGG 1 cut(s) 456
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 3 cut(s) 235, 491, 933
FatI CATG 3 cut(s) 231, 487, 929
Fnu4HI GCNGC 2 cut(s) 103, 730
FokI GGATG 1 cut(s) 476
Fsp4HI GCNGC 2 cut(s) 103, 730
FspBI CTAG 3 cut(s) 372, 389, 903
GlaI GCGC 1 cut(s) 424
GluI GCNGC 2 cut(s) 103, 730
HaeIII GGCC 6 cut(s) 492, 641, 732, 767, 876, 910
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 235, 491, 933
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 671, 914
HinfI GANTC 2 cut(s) 325, 706
HphI GGTGA 3 cut(s) 32, 182, 578
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 238, 429, 627
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 4 cut(s) 104, 788, 887, 900
HpyCH4III ACNGT 4 cut(s) 39, 73, 271, 726
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 4 cut(s) 54, 231, 657, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 212
HpyF3I CTNAG 5 cut(s) 106, 162, 202, 410, 426
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 3 cut(s) 235, 491, 933
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 1 cut(s) 523
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 2 cut(s) 218, 454
MaeI CTAG 3 cut(s) 372, 389, 903
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 2 cut(s) 20, 126
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 5 cut(s) 185, 582, 585, 701, 815
MfeI CAATTG 1 cut(s) 652
MhlI GDGCHC 2 cut(s) 61, 276
MluCI AATT 6 cut(s) 139, 182, 500, 652, 827, 861
MmeI TCCRAC 1 cut(s) 386
MnlI CCTC 7 cut(s) 338, 434, 445, 503, 540, 562, 880
Mph1103I ATGCAT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 5 cut(s) 309, 330, 599, 755, 921
MspA1I CMGCKG 1 cut(s) 102
MspCI CTTAAG 1 cut(s) 754
MspR9I CCNGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 203, 212
NcoI CCATGG 1 cut(s) 487
NdeII GATC 1 cut(s) 523
NlaIII CATG 3 cut(s) 235, 491, 933
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 20, 126
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 792
PagI TCATGA 1 cut(s) 929
PcsI WCGNNNNNNNCGW 3 cut(s) 30, 798, 807
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 325, 706
PkrI GCNGC 2 cut(s) 104, 731
Ppu21I YACGTR 1 cut(s) 660
PpuMI RGGWCCY 2 cut(s) 113, 454
PshAI GACNNNNGTC 1 cut(s) 586
Psp5II RGGWCCY 2 cut(s) 113, 454
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspPI GGNCC 4 cut(s) 113, 454, 581, 765
PspPPI RGGWCCY 2 cut(s) 113, 454
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 678, 752
RsaNI GTAC 2 cut(s) 677, 751
SaqAI TTAA 5 cut(s) 309, 330, 599, 755, 921
SatI GCNGC 2 cut(s) 103, 730
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 4 cut(s) 113, 454, 581, 765
ScrFI CCNGG 1 cut(s) 458
SduI GDGCHC 2 cut(s) 61, 276
SfaNI GCATC 2 cut(s) 218, 454
SfuI TTCGAA 1 cut(s) 792
SinI GGWCC 3 cut(s) 113, 454, 581
SmlI CTYRAG 3 cut(s) 223, 527, 754
SmoI CTYRAG 3 cut(s) 223, 527, 754
Sse9I AATT 6 cut(s) 139, 182, 500, 652, 827, 861
SsiI CCGC 1 cut(s) 729
SspMI CTAG 3 cut(s) 372, 389, 903
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 4 cut(s) 39, 73, 271, 726
TaiI ACGT 1 cut(s) 662
TaqI TCGA 1 cut(s) 792
TasI AATT 6 cut(s) 139, 182, 500, 652, 827, 861
TatI WGTACW 1 cut(s) 676
TauI GCSGC 1 cut(s) 732
TfiI GAWTC 2 cut(s) 325, 706
Tru1I TTAA 5 cut(s) 309, 330, 599, 755, 921
Tru9I TTAA 5 cut(s) 309, 330, 599, 755, 921
TscAI CASTG 4 cut(s) 61, 184, 283, 731
TseFI GTSAC 2 cut(s) 20, 126
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 2 cut(s) 20, 126
TspGWI ACGGA 3 cut(s) 39, 424, 738
TspRI CASTG 4 cut(s) 61, 184, 283, 731
Vha464I CTTAAG 1 cut(s) 754
VpaK11BI GGWCC 3 cut(s) 113, 454, 581
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 3 cut(s) 372, 389, 903
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.