Rh1AG235600

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003909
Physical Location & Seq
Reverse (-)
44603941 .. 44606450
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG235600.1

Sequence Viewer

Length: 1479 bp
ATGGATAATACTGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTGTTAAGTGTGTCAAACTCATCTACCCTTGTAAAATCCTTGGAAGATTTGATACAAGTTTGTAAAACGGCTGATGGTCGCGAAGACCTTGCCGCTAAGAATTTTCTCCCCACAGTCCTGCAGCTCATTCAATCTCTCTCGTACCCTTCTGATCACTACTTTCTGACGTTGTCTTTGAGGCTTTTAAGAAATCTGTGTGCGGGGGAGGAAGCAAATCAGAACTCATTTGTTGAACAAAATGGAGTTGCAATCATATCGAATGTTTTGAGTTCTGCAAACCTTTCTCCGGAGCCAGATTTTGGGATTATTTATGTGGGCTTGCAAGTTCTAGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAACTTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTGTGTATGATTATATACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCAAGTTTACAATGTGTTGATGGAAATGAGAATGGTGAAGATACAGAATGTGGAGAAGAGTCTTTCTCGAAAGAGCAAGAATTTTTGTTGGAAAACGTATCAGAGATCTTGAATGAGCGTCTCAACGAGATAACTGTTCCCAATGATTTTGCTTTGTGTGTTTATGGAATATTCAAGAACTCCGTCAGAGTTCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTATTGAGATAGATGTCCCAGGATACTCGCTCACAATCTTGAGAGATATATGTGCCCAAGGAACACTAAGAGGATCAACAGAGAATACAATGGATGTTGTGGATGTTTTGCTCTCCTCTGGTCTCATTGAATTACTTTTGTGTTTGCTTCGTGACCTTGAGCCGCCAGCAATAATTAGGAAATCTATCAACCAAGTTGAGGACCAAGATGGATCAAATCCTTCTACATTGAAACCATGTCCATACAAAGGTTTTCGGAGAGACATAGTTGGAGTCATTGGTAATTGTTTATATGGAAGGAAGCTTGTGCAAGATGAGATCAGGAGAAAGGATGGGCTTCTTCTGCTGTTACAACAGTGTGTAACAGATGATGACAACCCGTACTTAAGGGAGTGGGGCATTTGGTGTGTGAGGAACTTGTTGGAGCGGAACCAAGAAAATCAGCAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTTGATGTGCCCGACCTTGCTCGACTTGGTCTCCGAGTAGAGATGAATCCAGAAACTGGACGTCCGAAGCTTGTCAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

492

Amino Acids

54.49

Weight (kDa)

4.59

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 391 - 489 6.6e-34 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1459
Acc36I ACCTGC 1 cut(s) 888
AccB7I CCANNNNNTGG 3 cut(s) 353, 554, 1451
AccBSI CCGCTC 1 cut(s) 1345
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 5 cut(s) 147, 254, 1082, 1345, 1367
AclWI GGATC 2 cut(s) 1000, 1138
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 4 cut(s) 154, 560, 648, 764
AcyI GRCGYC 1 cut(s) 1456
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 33, 197, 629, 1301
AfiI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
AflII CTTAAG 1 cut(s) 1303
AgsI TTSAA 8 cut(s) 185, 287, 645, 796, 859, 1049, 1150, 1388
AhdI GACNNNNNGTC 1 cut(s) 489
AjnI CCWGG 1 cut(s) 937
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
AluBI AGCT 4 cut(s) 178, 386, 1222, 1465
AluI AGCT 4 cut(s) 178, 386, 1222, 1465
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 4 cut(s) 809, 1046, 1173, 1430
AlwI GGATC 2 cut(s) 1000, 1138
AlwNI CAGNNNCTG 2 cut(s) 55, 1451
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 6 cut(s) 175, 392, 415, 430, 599, 602
ApoI RAATTY 4 cut(s) 154, 560, 648, 764
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 491, 1120
AsuHPI GGTGA 2 cut(s) 569, 731
AvaII GGWCC 2 cut(s) 491, 1120
BaeGI GKGCMC 2 cut(s) 976, 1407
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 2 cut(s) 144, 488
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 6 cut(s) 187, 379, 427, 442, 586, 589
BccI CCATC 5 cut(s) 122, 518, 698, 1121, 1244
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 291, 325
BciT130I CCWGG 1 cut(s) 939
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 4 cut(s) 809, 1046, 1173, 1430
BfaI CTAG 1 cut(s) 383
BfmI CTRYAG 2 cut(s) 173, 603
BfrI CTTAAG 1 cut(s) 1303
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 789
BisI GCNGC 8 cut(s) 147, 176, 393, 416, 431, 600, 603, 1082
BlsI GCNGC 8 cut(s) 148, 177, 394, 417, 432, 601, 604, 1083
Bme1390I CCNGG 1 cut(s) 939
Bme18I GGWCC 2 cut(s) 491, 1120
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 491, 1120
BmiI GGNNCC 4 cut(s) 345, 529, 663, 1349
BmrFI CCNGG 1 cut(s) 939
BpiI GAAGAC 2 cut(s) 144, 488
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 2 cut(s) 32, 423
BpuEI CTTGAG 3 cut(s) 670, 979, 1097
BsaHI GRCGYC 1 cut(s) 1456
BsaI GGTCTC 2 cut(s) 1046, 1430
BsaJI CCNNGG 3 cut(s) 93, 937, 976
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 2 cut(s) 1410, 1440
Bsc4I CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
Bse1I ACTGG 2 cut(s) 543, 1456
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 939
BseDI CCNNGG 3 cut(s) 93, 937, 976
BseGI GGATG 3 cut(s) 1018, 1027, 1255
BseLI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 543, 1456
BseRI GAGGAG 1 cut(s) 1024
BseSI GKGCMC 2 cut(s) 976, 1407
BseXI GCAGC 6 cut(s) 187, 379, 427, 442, 586, 589
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 2 cut(s) 341, 673
BslFI GGGAC 1 cut(s) 920
BslI CCNNNNNNNGG 7 cut(s) 340, 353, 538, 554, 1117, 1166, 1451
BsmAI GTCTC 4 cut(s) 809, 1046, 1173, 1430
BsmBI CGTCTC 1 cut(s) 809
BsmFI GGGAC 1 cut(s) 920
BsnI GGCC 1 cut(s) 676
Bso31I GGTCTC 2 cut(s) 1046, 1430
Bsp1286I GDGCHC 3 cut(s) 29, 976, 1407
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 5 cut(s) 205, 789, 992, 1130, 1236
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 5 cut(s) 147, 254, 1082, 1345, 1367
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 1 cut(s) 455
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 345, 529, 663, 1349
BspMAI CTGCAG 2 cut(s) 177, 607
BspMI ACCTGC 1 cut(s) 888
BspPI GGATC 2 cut(s) 1000, 1138
BspTI CTTAAG 1 cut(s) 1303
BspTNI GGTCTC 2 cut(s) 1046, 1430
BsrBI CCGCTC 1 cut(s) 1345
BsrI ACTGG 2 cut(s) 543, 1456
BssECI CCNNGG 3 cut(s) 93, 937, 976
BssMI GATC 5 cut(s) 205, 789, 992, 1130, 1236
BssNI GRCGYC 1 cut(s) 1456
BssT1I CCWWGG 2 cut(s) 93, 976
Bst2UI CCWGG 1 cut(s) 939
Bst4CI ACNGT 4 cut(s) 57, 169, 820, 1275
Bst6I CTCTTC 2 cut(s) 443, 735
BstACI GRCGYC 1 cut(s) 1456
BstAFI CTTAAG 1 cut(s) 1303
BstC8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
BstDEI CTNAG 4 cut(s) 150, 442, 878, 986
BstF5I GGATG 3 cut(s) 1018, 1027, 1255
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 5 cut(s) 208, 792, 995, 1133, 1239
BstMAI GTCTC 4 cut(s) 809, 1046, 1173, 1430
BstMBI GATC 5 cut(s) 205, 789, 992, 1130, 1236
BstMWI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
BstNI CCWGG 1 cut(s) 939
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 937
BstSFI CTRYAG 2 cut(s) 173, 603
BstSLI GKGCMC 2 cut(s) 976, 1407
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 6 cut(s) 187, 379, 427, 442, 586, 589
BstV2I GAAGAC 2 cut(s) 144, 488
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 3 cut(s) 1018, 1027, 1255
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 3 cut(s) 14, 53, 1280
BtuMI TCGCGA 1 cut(s) 135
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 4 cut(s) 374, 420, 1086, 1365
CaiI CAGNNNCTG 2 cut(s) 55, 1451
Cfr13I GGNCC 2 cut(s) 491, 1120
CseI GACGC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 32, 196, 628, 1300
CviAII CATG 2 cut(s) 419, 1155
CviQI GTAC 4 cut(s) 32, 196, 628, 1300
DdeI CTNAG 4 cut(s) 150, 442, 878, 986
DpnI GATC 5 cut(s) 207, 791, 994, 1132, 1238
DpnII GATC 5 cut(s) 205, 789, 992, 1130, 1236
DraIII CACNNNGTG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 489
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 2 cut(s) 443, 735
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 443, 735
Eco130I CCWWGG 2 cut(s) 93, 976
Eco31I GGTCTC 2 cut(s) 1046, 1430
Eco47I GGWCC 2 cut(s) 491, 1120
EcoRII CCWGG 1 cut(s) 937
EcoT14I CCWWGG 2 cut(s) 93, 976
ErhI CCWWGG 2 cut(s) 93, 976
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 2 cut(s) 422, 1158
FaqI GGGAC 1 cut(s) 920
FatI CATG 2 cut(s) 418, 1154
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 8 cut(s) 147, 176, 393, 416, 431, 600, 603, 1082
FokI GGATG 3 cut(s) 1025, 1034, 1262
Fsp4HI GCNGC 8 cut(s) 147, 176, 393, 416, 431, 600, 603, 1082
FspBI CTAG 1 cut(s) 383
GluI GCNGC 8 cut(s) 147, 176, 393, 416, 431, 600, 603, 1082
GsuI CTGGAG 2 cut(s) 32, 423
HaeIII GGCC 1 cut(s) 676
HapII CCGG 2 cut(s) 341, 673
HgaI GACGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 1456
Hin1II CATG 2 cut(s) 422, 1158
HincII GTYRAC 1 cut(s) 1471
HindII GTYRAC 1 cut(s) 1471
HindIII AAGCTT 2 cut(s) 1220, 1463
HinfI GANTC 3 cut(s) 743, 1191, 1441
HpaII CCGG 2 cut(s) 341, 673
HphI GGTGA 2 cut(s) 569, 731
Hpy166II GTNNAC 2 cut(s) 692, 1471
Hpy188I TCNGA 9 cut(s) 205, 219, 273, 445, 787, 872, 1176, 1430, 1461
Hpy8I GTNNAC 2 cut(s) 692, 1471
HpyAV CCTTC 4 cut(s) 210, 574, 1149, 1209
HpyCH4III ACNGT 4 cut(s) 57, 169, 820, 1275
HpyCH4IV ACGT 3 cut(s) 221, 780, 1456
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
HpyF3I CTNAG 4 cut(s) 150, 442, 878, 986
HpySE526I ACGT 3 cut(s) 221, 780, 1456
Hsp92I GRCGYC 1 cut(s) 1456
Hsp92II CATG 2 cut(s) 422, 1158
Kpn2I TCCGGA 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 5 cut(s) 205, 789, 992, 1130, 1236
LmnI GCTCC 2 cut(s) 343, 1342
Lsp1109I GCAGC 6 cut(s) 187, 379, 427, 442, 586, 589
MaeI CTAG 1 cut(s) 383
MaeII ACGT 3 cut(s) 221, 780, 1456
MaeIII GTNAC 3 cut(s) 1070, 1266, 1279
MalI GATC 5 cut(s) 207, 791, 994, 1132, 1238
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 5 cut(s) 205, 789, 992, 1130, 1236
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 3 cut(s) 29, 976, 1407
MlyI GAGTC 2 cut(s) 752, 1200
MmeI TCCRAC 4 cut(s) 753, 935, 1168, 1320
MnlI CCTC 9 cut(s) 225, 253, 504, 652, 887, 983, 1045, 1111, 1323
MroI TCCGGA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 59, 239, 1304
MspCI CTTAAG 1 cut(s) 1303
MspI CCGG 2 cut(s) 341, 673
MspR9I CCNGG 1 cut(s) 939
MvaI CCWGG 1 cut(s) 939
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 392, 398, 1261
NdeII GATC 5 cut(s) 205, 789, 992, 1130, 1236
NlaIII CATG 2 cut(s) 422, 1158
NlaIV GGNNCC 4 cut(s) 345, 529, 663, 1349
NmuCI GTSAC 1 cut(s) 1070
NruI TCGCGA 1 cut(s) 135
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 1441
PflFI GACNNNGTC 2 cut(s) 223, 1422
PflMI CCANNNNNTGG 3 cut(s) 353, 554, 1451
PkrI GCNGC 8 cut(s) 148, 177, 394, 417, 432, 601, 604, 1083
PleI GAGTC 2 cut(s) 751, 1199
PpsI GAGTC 2 cut(s) 751, 1199
Psp6I CCWGG 1 cut(s) 937
PspGI CCWGG 1 cut(s) 937
PspN4I GGNNCC 4 cut(s) 345, 529, 663, 1349
PspPI GGNCC 2 cut(s) 491, 1120
PstI CTGCAG 2 cut(s) 177, 607
PstNI CAGNNNCTG 2 cut(s) 55, 1451
PsuI RGATCY 1 cut(s) 789
PsyI GACNNNGTC 2 cut(s) 223, 1422
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 4 cut(s) 33, 197, 629, 1301
RsaNI GTAC 4 cut(s) 32, 196, 628, 1300
SaqAI TTAA 3 cut(s) 59, 239, 1304
SatI GCNGC 8 cut(s) 147, 176, 393, 416, 431, 600, 603, 1082
Sau3AI GATC 5 cut(s) 205, 789, 992, 1130, 1236
Sau96I GGNCC 2 cut(s) 491, 1120
SchI GAGTC 2 cut(s) 752, 1200
ScrFI CCNGG 1 cut(s) 939
SduI GDGCHC 3 cut(s) 29, 976, 1407
SfcI CTRYAG 2 cut(s) 173, 603
SinI GGWCC 2 cut(s) 491, 1120
SmlI CTYRAG 4 cut(s) 685, 958, 1076, 1303
SmoI CTYRAG 4 cut(s) 685, 958, 1076, 1303
SphI GCATGC 1 cut(s) 422
SsiI CCGC 5 cut(s) 147, 254, 1082, 1345, 1367
SspI AATATT 1 cut(s) 855
SspMI CTAG 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 937
StyI CCWWGG 2 cut(s) 93, 976
TaaI ACNGT 4 cut(s) 57, 169, 820, 1275
TaiI ACGT 3 cut(s) 224, 783, 1459
TaqI TCGA 3 cut(s) 311, 752, 1417
TauI GCSGC 2 cut(s) 149, 1084
TfiI GAWTC 1 cut(s) 1441
Tru1I TTAA 3 cut(s) 59, 239, 1304
Tru9I TTAA 3 cut(s) 59, 239, 1304
TscAI CASTG 3 cut(s) 21, 60, 1280
TseFI GTSAC 1 cut(s) 1070
TseI GCWGC 6 cut(s) 175, 392, 415, 430, 599, 602
Tsp45I GTSAC 1 cut(s) 1070
TspDTI ATGAA 1 cut(s) 1454
TspGWI ACGGA 1 cut(s) 856
TspRI CASTG 3 cut(s) 21, 60, 1280
Tth111I GACNNNGTC 2 cut(s) 223, 1422
Van91I CCANNNNNTGG 3 cut(s) 353, 554, 1451
Vha464I CTTAAG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 491, 1120
XapI RAATTY 4 cut(s) 154, 560, 648, 764
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 383
ZraI GACGTC 1 cut(s) 1457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.