RchiOBHm_Chr1g0313121

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003909
Physical Location & Seq
Reverse (-)
233213 .. 242752
9540 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54394

Sequence Viewer

Length: 1386 bp
ATGGATGATACAGCACTGCAAGAGTGCTCTGTACCCGAAGATGTTCTCCAGACACTTTTAAGTGTGTCAAACTCATCTACACTTGTAAAATCCTTGGAAGATTTGATACAAGCTTGTAAAACGGCTGATGGTCGCGAAGACCTTGCCACTAAGAATGTTCTCCCCACAGTCCTCCAGCTCATTCAATCTCTCTCGTACCCTTCTGATCAACACCTTCTGACATTGTCTTTAAGGCTTTTAAGAAATCTGTGTGCGGGGGAGGAAGCAAATCAGAACTCATTTGTTGAGCAAAATGGAGTTGCAATCATATCGAATGTTTTGAGTTCTGCAAACCTTTCTCTGGAGCCAGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTCTGGCTAATGCTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTCAGAAAAATTTGTTGCTCTTGCAAGAGTTCGTAGCCAGAAGACTTGTGGTCCTCTGTGTATGATTATCTACACTTGTTGTGATGGAACCCCTGAACTGGTTGCACCACTTTGTGGTGAATTTGGAATAACTATTGTGAAGGAGATTGTAAAGACTGCTGCTGCAGTTGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGAATTTGTTTAGAGGAACCTTTCTTCCGGCCACTTTTCTCTAGTTTACAATGTGTTGGTGGAAATGAGAATGGTGAAGATACAGAACGTGGGGAAGAGCCTTTCTCGAAAGAGCAAGAATTTTTGTTGGAAAACGTATCAGAGATCTTGAATGAGCGTCTCAATGAGATAACTGTTCCCAATGATTTTGCTTTGTGCGTTTATGGAATATTCAAGAACTCCATCAGAGTTCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTATTGAGATAGATGTCCTAGGATACTCGCTCACAATCTTGAGAGATATATGTGCCCAAGGAACACTAAGAGGATCAACAGAGAATACGATGGATGTTGTGGATATTCTGCTCTCCTCTGGTCTCATTGAATTACTTTTGTGTTTGCTTCGTGAACTTGAGCCAGACATAGTTGGAGTCATTGGCAATTGTTTATATGGAAGGAAGCTTGTGCAAGATAAGATTAGGAGAAAGGACGGGCTTCTTCTGCTGTTGCAACAGTGTGTAACAGATGATGACAACCCGTACTTAAGGGAGTGGGGCATTTGGTGTGTGAGGAACTTGTTGGAGCGGAACCAAGAAAATCAGCAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTCGATGTGCCTGACCTTGCTCGACTTGGTCTTCGAGTAGAGATGAATCCAGAAACTGGACGTCCGAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

461

Amino Acids

50.89

Weight (kDa)

4.58

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 362 - 457 1e-32 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1363
Acc36I ACCTGC 1 cut(s) 888
AccB7I CCANNNNNTGG 3 cut(s) 353, 554, 1355
AccBSI CCGCTC 1 cut(s) 1249
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 254, 1249, 1271
AclWI GGATC 1 cut(s) 1000
AcoI YGGCCR 1 cut(s) 674
AcsI RAATTY 4 cut(s) 449, 560, 648, 764
AcyI GRCGYC 1 cut(s) 1360
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 33, 197, 629, 1205
AfiI CCNNNNNNNGG 5 cut(s) 340, 353, 538, 554, 1355
AflII CTTAAG 1 cut(s) 1207
AgsI TTSAA 6 cut(s) 185, 645, 796, 859, 1049, 1292
AhdI GACNNNNNGTC 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 654, 686
AluBI AGCT 4 cut(s) 113, 178, 1126, 1369
AluI AGCT 4 cut(s) 113, 178, 1126, 1369
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 809, 1046
AlwI GGATC 1 cut(s) 1000
AlwNI CAGNNNCTG 1 cut(s) 1355
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 5 cut(s) 392, 415, 430, 599, 602
ApoI RAATTY 4 cut(s) 449, 560, 648, 764
ArsI GACNNNNNNTTYG 2 cut(s) 1314, 1346
Asp700I GAANNNNTTC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 937
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 2 cut(s) 569, 731
AvaII GGWCC 1 cut(s) 491
AvrII CCTAGG 1 cut(s) 937
BaeGI GKGCMC 1 cut(s) 976
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 3 cut(s) 144, 488, 1322
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 5 cut(s) 379, 427, 442, 586, 589
BccI CCATC 4 cut(s) 122, 518, 875, 1003
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 291, 325
BciVI GTATCC 1 cut(s) 935
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 809, 1046
BfaI CTAG 2 cut(s) 687, 938
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 1207
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 935
BglII AGATCT 1 cut(s) 789
BisI GCNGC 5 cut(s) 393, 416, 431, 600, 603
BlnI CCTAGG 1 cut(s) 937
BlsI GCNGC 5 cut(s) 394, 417, 432, 601, 604
Bme18I GGWCC 1 cut(s) 491
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 4 cut(s) 345, 529, 663, 1253
BpiI GAAGAC 3 cut(s) 144, 488, 1322
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 4 cut(s) 32, 158, 362, 423
BpuEI CTTGAG 2 cut(s) 979, 1097
BsaHI GRCGYC 1 cut(s) 1360
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 93, 937, 976
Bsc4I CCNNNNNNNGG 5 cut(s) 340, 353, 538, 554, 1355
Bse1I ACTGG 2 cut(s) 543, 1360
BseDI CCNNGG 3 cut(s) 93, 937, 976
BseGI GGATG 2 cut(s) 10, 1018
BseLI CCNNNNNNNGG 5 cut(s) 340, 353, 538, 554, 1355
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 2 cut(s) 543, 1360
BseRI GAGGAG 1 cut(s) 1024
BseSI GKGCMC 1 cut(s) 976
BseXI GCAGC 5 cut(s) 379, 427, 442, 586, 589
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 676
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 1 cut(s) 673
BslI CCNNNNNNNGG 5 cut(s) 340, 353, 538, 554, 1355
BsmAI GTCTC 2 cut(s) 809, 1046
BsmBI CGTCTC 1 cut(s) 809
BsnI GGCC 1 cut(s) 676
Bso31I GGTCTC 1 cut(s) 1046
Bsp1286I GDGCHC 2 cut(s) 29, 976
Bsp143I GATC 3 cut(s) 205, 789, 992
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 3 cut(s) 254, 1249, 1271
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 1 cut(s) 455
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 1382
BspLI GGNNCC 4 cut(s) 345, 529, 663, 1253
BspMAI CTGCAG 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 888
BspPI GGATC 1 cut(s) 1000
BspQI GCTCTTC 1 cut(s) 735
BspTI CTTAAG 1 cut(s) 1207
BspTNI GGTCTC 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 1249
BsrI ACTGG 2 cut(s) 543, 1360
BssECI CCNNGG 3 cut(s) 93, 937, 976
BssMI GATC 3 cut(s) 205, 789, 992
BssNI GRCGYC 1 cut(s) 1360
BssT1I CCWWGG 3 cut(s) 93, 937, 976
Bst4CI ACNGT 3 cut(s) 169, 820, 1179
Bst6I CTCTTC 2 cut(s) 443, 735
BstACI GRCGYC 1 cut(s) 1360
BstAFI CTTAAG 1 cut(s) 1207
BstC8I GCNNGC 3 cut(s) 374, 420, 1269
BstDEI CTNAG 4 cut(s) 150, 442, 878, 986
BstF5I GGATG 2 cut(s) 10, 1018
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 3 cut(s) 208, 792, 995
BstMAI GTCTC 2 cut(s) 809, 1046
BstMBI GATC 3 cut(s) 205, 789, 992
BstMWI GCNNNNNNNGC 3 cut(s) 392, 398, 1165
BstNSI RCATGY 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 603
BstSLI GKGCMC 1 cut(s) 976
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 5 cut(s) 379, 427, 442, 586, 589
BstV2I GAAGAC 3 cut(s) 144, 488, 1322
BstX2I RGATCY 1 cut(s) 789
BstYI RGATCY 1 cut(s) 789
BsuI GTATCC 1 cut(s) 935
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 2 cut(s) 10, 1018
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 1184
BtuMI TCGCGA 1 cut(s) 135
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 3 cut(s) 374, 420, 1269
CaiI CAGNNNCTG 1 cut(s) 1355
CciI TCATGA 1 cut(s) 1382
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 32, 196, 628, 1204
CviAII CATG 2 cut(s) 419, 1383
CviQI GTAC 4 cut(s) 32, 196, 628, 1204
DdeI CTNAG 4 cut(s) 150, 442, 878, 986
DpnI GATC 3 cut(s) 207, 791, 994
DpnII GATC 3 cut(s) 205, 789, 992
DraIII CACNNNGTG 1 cut(s) 554
DriI GACNNNNNGTC 1 cut(s) 489
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 2 cut(s) 443, 735
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 443, 735
Eco130I CCWWGG 3 cut(s) 93, 937, 976
Eco31I GGTCTC 1 cut(s) 1046
Eco47I GGWCC 1 cut(s) 491
EcoT14I CCWWGG 3 cut(s) 93, 937, 976
ErhI CCWWGG 3 cut(s) 93, 937, 976
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 2 cut(s) 422, 1386
FatI CATG 2 cut(s) 418, 1382
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 5 cut(s) 393, 416, 431, 600, 603
FokI GGATG 2 cut(s) 17, 1025
Fsp4HI GCNGC 5 cut(s) 393, 416, 431, 600, 603
FspBI CTAG 2 cut(s) 687, 938
GluI GCNGC 5 cut(s) 393, 416, 431, 600, 603
GsuI CTGGAG 4 cut(s) 32, 158, 362, 423
HaeIII GGCC 1 cut(s) 676
HapII CCGG 1 cut(s) 673
HgaI GACGC 1 cut(s) 791
Hin1I GRCGYC 1 cut(s) 1360
Hin1II CATG 2 cut(s) 422, 1386
HindIII AAGCTT 3 cut(s) 111, 1124, 1367
HinfI GANTC 2 cut(s) 1095, 1345
HpaII CCGG 1 cut(s) 673
HphI GGTGA 2 cut(s) 569, 731
Hpy166II GTNNAC 2 cut(s) 692, 1073
Hpy188I TCNGA 7 cut(s) 205, 219, 273, 445, 787, 872, 1365
Hpy8I GTNNAC 2 cut(s) 692, 1073
HpyAV CCTTC 4 cut(s) 210, 224, 574, 1113
HpyCH4III ACNGT 3 cut(s) 169, 820, 1179
HpyCH4IV ACGT 3 cut(s) 733, 780, 1360
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 398, 1165
HpyF3I CTNAG 4 cut(s) 150, 442, 878, 986
HpySE526I ACGT 3 cut(s) 733, 780, 1360
Hsp92I GRCGYC 1 cut(s) 1360
Hsp92II CATG 2 cut(s) 422, 1386
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 789, 992
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 343, 1246
Lsp1109I GCAGC 5 cut(s) 379, 427, 442, 586, 589
MaeI CTAG 2 cut(s) 687, 938
MaeII ACGT 3 cut(s) 733, 780, 1360
MaeIII GTNAC 1 cut(s) 1183
MalI GATC 3 cut(s) 207, 791, 994
MbiI CCGCTC 1 cut(s) 1249
MboI GATC 3 cut(s) 205, 789, 992
MfeI CAATTG 1 cut(s) 1105
MflI RGATCY 1 cut(s) 789
MhlI GDGCHC 2 cut(s) 29, 976
MluCI AATT 9 cut(s) 423, 449, 560, 632, 648, 764, 1049, 1105, 1280
MlyI GAGTC 1 cut(s) 1104
MmeI TCCRAC 4 cut(s) 753, 935, 1072, 1224
MnlI CCTC 8 cut(s) 182, 253, 504, 652, 887, 983, 1045, 1227
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 5 cut(s) 59, 230, 239, 1208, 1374
MspCI CTTAAG 1 cut(s) 1207
MspI CCGG 1 cut(s) 673
MunI CAATTG 1 cut(s) 1105
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 392, 398, 1165
NdeII GATC 3 cut(s) 205, 789, 992
NlaIII CATG 2 cut(s) 422, 1386
NlaIV GGNNCC 4 cut(s) 345, 529, 663, 1253
NruI TCGCGA 1 cut(s) 135
NspI RCATGY 1 cut(s) 422
PaeI GCATGC 1 cut(s) 422
PagI TCATGA 1 cut(s) 1382
PciSI GCTCTTC 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 1345
PflFI GACNNNGTC 2 cut(s) 223, 1326
PflMI CCANNNNNTGG 3 cut(s) 353, 554, 1355
PkrI GCNGC 5 cut(s) 394, 417, 432, 601, 604
PleI GAGTC 1 cut(s) 1103
PpsI GAGTC 1 cut(s) 1103
PspN4I GGNNCC 4 cut(s) 345, 529, 663, 1253
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 1355
PsuI RGATCY 1 cut(s) 789
PsyI GACNNNGTC 2 cut(s) 223, 1326
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 4 cut(s) 33, 197, 629, 1205
RsaNI GTAC 4 cut(s) 32, 196, 628, 1204
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 5 cut(s) 59, 230, 239, 1208, 1374
SatI GCNGC 5 cut(s) 393, 416, 431, 600, 603
Sau3AI GATC 3 cut(s) 205, 789, 992
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 1 cut(s) 1104
SduI GDGCHC 2 cut(s) 29, 976
SfcI CTRYAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 491
SmlI CTYRAG 3 cut(s) 958, 1076, 1207
SmoI CTYRAG 3 cut(s) 958, 1076, 1207
SphI GCATGC 1 cut(s) 422
Sse9I AATT 9 cut(s) 423, 449, 560, 632, 648, 764, 1049, 1105, 1280
SsiI CCGC 3 cut(s) 254, 1249, 1271
SspI AATATT 1 cut(s) 855
SspMI CTAG 2 cut(s) 687, 938
StyI CCWWGG 3 cut(s) 93, 937, 976
TaaI ACNGT 3 cut(s) 169, 820, 1179
TaiI ACGT 3 cut(s) 736, 783, 1363
TaqI TCGA 5 cut(s) 311, 752, 1302, 1321, 1333
TasI AATT 9 cut(s) 423, 449, 560, 632, 648, 764, 1049, 1105, 1280
TfiI GAWTC 1 cut(s) 1345
Tru1I TTAA 5 cut(s) 59, 230, 239, 1208, 1374
Tru9I TTAA 5 cut(s) 59, 230, 239, 1208, 1374
TscAI CASTG 2 cut(s) 21, 1184
TseI GCWGC 5 cut(s) 392, 415, 430, 599, 602
TspDTI ATGAA 1 cut(s) 1358
TspRI CASTG 2 cut(s) 21, 1184
Tth111I GACNNNGTC 2 cut(s) 223, 1326
Van91I CCANNNNNTGG 3 cut(s) 353, 554, 1355
Vha464I CTTAAG 1 cut(s) 1207
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 4 cut(s) 449, 560, 648, 764
XceI RCATGY 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 937
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 687, 938
ZraI GACGTC 1 cut(s) 1361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.