FvH4_7g08540

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003909
Physical Location & Seq
Forward (+)
8368980 .. 8372194
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08540.t4

Sequence Viewer

Length: 1479 bp
ATGGATAATACCACACTGCCAGAGTGCTCTGTTCCCGAACATGTCCTCCAGGCGCTTTTGAGTGTGTCAAACTCATCTAAACTTGTAGACTCGTTGGAAGATTTAGTACAAGTTTGTAAAACGGCTGATGGTCGTGAAGACCTTTCCGCTAAGAATGTTCTTCCGACAGTTATACAGCTTGTTCAATCTCTCTCGTACCCTTCTGATCACTACCTTCTGACCTTGTCTTTAAGGCTTCTAAGAAACCTGTGTGCTGGGGAGGTGGCAAACCAGAACTCATTTGTTGAACAAAATGGAGTGGCAATCATATCCAATATTTTGAGTTCTGCAAGTTCTCTGGAGCCGGATTTTGGGATTATTTGTGTGGGCTTGCAAGTTTTAGCTAATGTTGCATTGGCTGGAGAACGACAGCAGCATGCAATTTGGCAGCAACTCTTCTTAGAAAATTTTGTTGCTCTTGCAAGAGTCCGTAGCCAGAAGACTTGTGGTCCGCTATGTATGATTATCTACGCTTGTTGTGATGGAACCCCTGAACTGGTTGCACAGCTTTGTGGTGATTGTGGAGTGACTATTGTGAAAGAAATTGTTAAGACTGCTGCTGCAGATGGTTTTGGAGAAGATTGGTACAAATTGCTTCTTTCAAGGATCTGCTTAGAGGAACCTTACTTCCGGCCACTCTTCTTTAGTTTACAACATGTTGGTGGAAATGAGAATGGCGACGATACTGAAGGTGGGCAAGAGTCTTTCTTGGAAGAGCAAGAATTTTTGTTGAAAAATGTATCAGAGATTTTGAATGAGCGTCTGAACGAGATAACTGTTCCCGACGATTTTGCTTTGTGTGTTTTTGGAATATTCAAGAACTCCATTAAGGTCCTTAGTTATGCAACAAGAGGCAGGTCTGGACTTCCAACAGGCTCTATTGACATTGATGTCCTGGGATACTCGCTCACTATCTTGAGAGATATATGTGCCCAAGGGACACTAAGAGGATGTACAGTGGATACCATGGATGTTGTGGATGCTTTGATCTCCTATGGTCTCATTGAATTACTTCTGTGTTTGCTTCGTGACCTTGAGCCGCCAGCAATAATAAAGAAATCTGTCAACCAAGCCAAGGACCAAGAAGGATCAAATTACTCTGCTTCAAAACCATGTCCATATAAAGGTTTTCGGAGAGACATAGTTGGAGTCATCGGCAATTGTTTATATGGAAGGCAGATTGTGCAAGATGAGATTAGGAGAAAAGATGGGCTACTTTTGCTGTTGCAACAATGTGTAACAGATGATGATAACCCCTACTTAAGGGAGTGGGGAATTTGGTGTGTCAGGAACTTGTTGGAGCGGAACCAAGAAAATCAACAGGCGGTGGCTGAATTGGAACTTCAAGGGTCTGTTGATGTGCCTGACCTTGCTCGATTAGGTCTCCGAGTAGAGATGAACCCGGCAACTGGACGTCCAAAGCTTGTTAATATCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

493

Amino Acids

54.2

Weight (kDa)

4.68

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 390 - 487 1.5e-33 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 929
AatII GACGTC 1 cut(s) 1456
Acc36I ACCTGC 1 cut(s) 885
AccBSI CCGCTC 1 cut(s) 1342
AccI GTMKAC 1 cut(s) 87
AciI CCGC 5 cut(s) 147, 491, 1079, 1342, 1364
AclWI GGATC 2 cut(s) 653, 1135
AcoI YGGCCR 1 cut(s) 671
AcsI RAATTY 3 cut(s) 445, 761, 1314
AcuI CTGAAG 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 1453
AfaI GTAC 4 cut(s) 108, 197, 626, 994
AfiI CCNNNNNNNGG 6 cut(s) 350, 535, 1114, 1163, 1302, 1448
AflII CTTAAG 1 cut(s) 1300
AflIII ACRYGT 2 cut(s) 40, 694
AgsI TTSAA 9 cut(s) 185, 287, 642, 772, 793, 856, 1046, 1146, 1385
AhdI GACNNNNNGTC 1 cut(s) 486
AjnI CCWGG 2 cut(s) 48, 933
AloI GAACNNNNNNTCC 4 cut(s) 30, 62, 651, 683
AluBI AGCT 4 cut(s) 178, 383, 547, 1462
AluI AGCT 4 cut(s) 178, 383, 547, 1462
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 3 cut(s) 1043, 1170, 1427
AlwI GGATC 2 cut(s) 653, 1135
AoxI GGCC 1 cut(s) 671
ApeKI GCWGC 4 cut(s) 412, 427, 596, 599
ApoI RAATTY 3 cut(s) 445, 761, 1314
Asp700I GAANNNNTTC 1 cut(s) 1050
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 488, 871, 1117
AsuC2I CCSGG 1 cut(s) 1442
AsuHPI GGTGA 1 cut(s) 566
AvaII GGWCC 3 cut(s) 488, 871, 1117
BaeGI GKGCMC 1 cut(s) 973
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbsI GAAGAC 2 cut(s) 144, 485
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 4 cut(s) 424, 439, 583, 586
BccI CCATC 4 cut(s) 122, 515, 599, 1241
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciT130I CCWGG 2 cut(s) 50, 935
BciVI GTATCC 2 cut(s) 932, 994
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 1442
BcoDI GTCTC 3 cut(s) 1043, 1170, 1427
BfmI CTRYAG 1 cut(s) 600
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 1300
BfuAI ACCTGC 1 cut(s) 885
BfuI GTATCC 2 cut(s) 932, 994
BisI GCNGC 5 cut(s) 413, 428, 597, 600, 1079
BlsI GCNGC 5 cut(s) 414, 429, 598, 601, 1080
Bme1390I CCNGG 3 cut(s) 50, 935, 1442
Bme18I GGWCC 3 cut(s) 488, 871, 1117
BmeRI GACNNNNNGTC 1 cut(s) 486
BmgT120I GGNCC 3 cut(s) 488, 871, 1117
BmiI GGNNCC 4 cut(s) 342, 526, 660, 1346
BmrFI CCNGG 3 cut(s) 50, 935, 1442
BmsI GCATC 1 cut(s) 1009
BpiI GAAGAC 2 cut(s) 144, 485
BpmI CTGGAG 3 cut(s) 32, 359, 420
BpuEI CTTGAG 2 cut(s) 976, 1094
BpuMI CCSGG 1 cut(s) 1442
BsaHI GRCGYC 1 cut(s) 1453
BsaI GGTCTC 2 cut(s) 1043, 1427
BsaJI CCNNGG 4 cut(s) 934, 973, 1005, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 6 cut(s) 350, 535, 1114, 1163, 1302, 1448
Bse1I ACTGG 2 cut(s) 540, 1453
BseBI CCWGG 2 cut(s) 50, 935
BseDI CCNNGG 4 cut(s) 934, 973, 1005, 1113
BseGI GGATG 3 cut(s) 995, 1015, 1024
BseLI CCNNNNNNNGG 6 cut(s) 350, 535, 1114, 1163, 1302, 1448
BseNI ACTGG 2 cut(s) 540, 1453
BseSI GKGCMC 1 cut(s) 973
BseXI GCAGC 4 cut(s) 424, 439, 583, 586
BseYI CCCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 344, 670, 1442
BslFI GGGAC 1 cut(s) 991
BslI CCNNNNNNNGG 6 cut(s) 350, 535, 1114, 1163, 1302, 1448
BsmAI GTCTC 3 cut(s) 1043, 1170, 1427
BsmFI GGGAC 1 cut(s) 991
BsnI GGCC 1 cut(s) 673
Bso31I GGTCTC 2 cut(s) 1043, 1427
Bsp1286I GDGCHC 2 cut(s) 29, 973
Bsp1407I TGTACA 1 cut(s) 992
Bsp143I GATC 4 cut(s) 205, 645, 1026, 1127
Bsp19I CCATGG 1 cut(s) 1005
BspACI CCGC 5 cut(s) 147, 491, 1079, 1342, 1364
BspANI GGCC 1 cut(s) 673
BspHI TCATGA 1 cut(s) 1475
BspLI GGNNCC 4 cut(s) 342, 526, 660, 1346
BspMAI CTGCAG 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 2 cut(s) 653, 1135
BspQI GCTCTTC 1 cut(s) 747
BspTI CTTAAG 1 cut(s) 1300
BspTNI GGTCTC 2 cut(s) 1043, 1427
BsrBI CCGCTC 1 cut(s) 1342
BsrGI TGTACA 1 cut(s) 992
BsrI ACTGG 2 cut(s) 540, 1453
BssECI CCNNGG 4 cut(s) 934, 973, 1005, 1113
BssMI GATC 4 cut(s) 205, 645, 1026, 1127
BssNI GRCGYC 1 cut(s) 1453
BssT1I CCWWGG 3 cut(s) 973, 1005, 1113
Bst2UI CCWGG 2 cut(s) 50, 935
Bst4CI ACNGT 3 cut(s) 169, 817, 997
Bst6I CTCTTC 3 cut(s) 440, 683, 747
BstACI GRCGYC 1 cut(s) 1453
BstAFI CTTAAG 1 cut(s) 1300
BstAPI GCANNNNNTGC 1 cut(s) 1222
BstAUI TGTACA 1 cut(s) 992
BstC8I GCNNGC 3 cut(s) 371, 417, 1083
BstDEI CTNAG 6 cut(s) 150, 239, 439, 652, 875, 983
BstDSI CCRYGG 1 cut(s) 1005
BstENI CCTNNNNNAGG 1 cut(s) 1300
BstF5I GGATG 3 cut(s) 995, 1015, 1024
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 4 cut(s) 208, 648, 1029, 1130
BstMAI GTCTC 3 cut(s) 1043, 1170, 1427
BstMBI GATC 4 cut(s) 205, 645, 1026, 1127
BstMWI GCNNNNNNNGC 3 cut(s) 389, 1222, 1258
BstNI CCWGG 2 cut(s) 50, 935
BstNSI RCATGY 3 cut(s) 44, 419, 698
BstSCI CCNGG 3 cut(s) 48, 933, 1440
BstSFI CTRYAG 1 cut(s) 600
BstSLI GKGCMC 1 cut(s) 973
BstV1I GCAGC 4 cut(s) 424, 439, 583, 586
BstV2I GAAGAC 2 cut(s) 144, 485
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuI GTATCC 2 cut(s) 932, 994
BsuRI GGCC 1 cut(s) 673
BtgI CCRYGG 1 cut(s) 1005
BtsCI GGATG 3 cut(s) 995, 1015, 1024
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 14, 1002
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 3 cut(s) 371, 417, 1083
CciI TCATGA 1 cut(s) 1475
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 3 cut(s) 488, 871, 1117
CseI GACGC 1 cut(s) 788
Csp6I GTAC 4 cut(s) 107, 196, 625, 993
CviAII CATG 6 cut(s) 41, 416, 695, 1006, 1152, 1476
CviQI GTAC 4 cut(s) 107, 196, 625, 993
DdeI CTNAG 6 cut(s) 150, 239, 439, 652, 875, 983
DpnI GATC 4 cut(s) 207, 647, 1028, 1129
DpnII GATC 4 cut(s) 205, 645, 1026, 1127
DrdI GACNNNNNNGTC 1 cut(s) 929
DriI GACNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 929
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 3 cut(s) 440, 683, 747
Eam1105I GACNNNNNGTC 1 cut(s) 486
EarI CTCTTC 3 cut(s) 440, 683, 747
Eco130I CCWWGG 3 cut(s) 973, 1005, 1113
Eco31I GGTCTC 2 cut(s) 1043, 1427
Eco47I GGWCC 3 cut(s) 488, 871, 1117
Eco57I CTGAAG 1 cut(s) 747
EcoNI CCTNNNNNAGG 1 cut(s) 1300
EcoO109I RGGNCCY 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 48, 933
EcoT14I CCWWGG 3 cut(s) 973, 1005, 1113
ErhI CCWWGG 3 cut(s) 973, 1005, 1113
FaeI CATG 6 cut(s) 44, 419, 698, 1009, 1155, 1479
FaqI GGGAC 1 cut(s) 991
FatI CATG 6 cut(s) 40, 415, 694, 1005, 1151, 1475
FbaI TGATCA 1 cut(s) 205
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 413, 428, 597, 600, 1079
FokI GGATG 3 cut(s) 1002, 1022, 1031
Fsp4HI GCNGC 5 cut(s) 413, 428, 597, 600, 1079
GlaI GCGC 1 cut(s) 54
GluI GCNGC 5 cut(s) 413, 428, 597, 600, 1079
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 3 cut(s) 32, 359, 420
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 673
HapII CCGG 3 cut(s) 344, 670, 1442
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 1453
Hin1II CATG 6 cut(s) 44, 419, 698, 1009, 1155, 1479
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HindIII AAGCTT 1 cut(s) 1460
HinfI GANTC 4 cut(s) 89, 465, 740, 1188
HpaII CCGG 3 cut(s) 344, 670, 1442
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 3 cut(s) 88, 689, 1105
Hpy188I TCNGA 7 cut(s) 165, 205, 219, 784, 804, 1173, 1427
Hpy8I GTNNAC 3 cut(s) 88, 689, 1105
Hpy99I CGWCG 2 cut(s) 722, 827
HpyAV CCTTC 5 cut(s) 210, 224, 722, 1118, 1206
HpyCH4III ACNGT 3 cut(s) 169, 817, 997
HpyCH4IV ACGT 1 cut(s) 1453
HpyF10VI GCNNNNNNNGC 3 cut(s) 389, 1222, 1258
HpyF3I CTNAG 6 cut(s) 150, 239, 439, 652, 875, 983
HpySE526I ACGT 1 cut(s) 1453
Hsp92I GRCGYC 1 cut(s) 1453
Hsp92II CATG 6 cut(s) 44, 419, 698, 1009, 1155, 1479
HspAI GCGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 205, 645, 1026, 1127
LguI GCTCTTC 1 cut(s) 747
LmnI GCTCC 2 cut(s) 340, 1339
Lsp1109I GCAGC 4 cut(s) 424, 439, 583, 586
LweI GCATC 1 cut(s) 1009
MaeII ACGT 1 cut(s) 1453
MaeIII GTNAC 3 cut(s) 565, 1067, 1276
MalI GATC 4 cut(s) 207, 647, 1028, 1129
MbiI CCGCTC 1 cut(s) 1342
MboI GATC 4 cut(s) 205, 645, 1026, 1127
MboII GAAGA 8 cut(s) 110, 149, 152, 427, 490, 629, 670, 764
MfeI CAATTG 1 cut(s) 1198
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 2 cut(s) 29, 973
MlyI GAGTC 4 cut(s) 83, 474, 749, 1197
MmeI TCCRAC 5 cut(s) 75, 188, 932, 1165, 1317
MnlI CCTC 5 cut(s) 56, 253, 649, 884, 980
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 5 cut(s) 230, 588, 867, 1301, 1467
MslI CAYNNNNRTG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 1300
MspI CCGG 3 cut(s) 344, 670, 1442
MspR9I CCNGG 3 cut(s) 50, 935, 1442
MunI CAATTG 1 cut(s) 1198
MvaI CCWGG 2 cut(s) 50, 935
MwoI GCNNNNNNNGC 3 cut(s) 389, 1222, 1258
NciI CCSGG 1 cut(s) 1442
NcoI CCATGG 1 cut(s) 1005
NdeII GATC 4 cut(s) 205, 645, 1026, 1127
NlaIII CATG 6 cut(s) 44, 419, 698, 1009, 1155, 1479
NlaIV GGNNCC 4 cut(s) 342, 526, 660, 1346
NmuCI GTSAC 2 cut(s) 565, 1067
NspI RCATGY 3 cut(s) 44, 419, 698
PaeI GCATGC 1 cut(s) 419
PagI TCATGA 1 cut(s) 1475
PciI ACATGT 2 cut(s) 40, 694
PciSI GCTCTTC 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 1050
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 5 cut(s) 414, 429, 598, 601, 1080
PleI GAGTC 4 cut(s) 83, 473, 748, 1196
PpsI GAGTC 4 cut(s) 83, 473, 748, 1196
PpuMI RGGWCCY 1 cut(s) 871
PscI ACATGT 2 cut(s) 40, 694
Psp5II RGGWCCY 1 cut(s) 871
Psp6I CCWGG 2 cut(s) 48, 933
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 48, 933
PspN4I GGNNCC 4 cut(s) 342, 526, 660, 1346
PspPI GGNCC 3 cut(s) 488, 871, 1117
PspPPI RGGWCCY 1 cut(s) 871
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 1 cut(s) 645
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 4 cut(s) 108, 197, 626, 994
RsaNI GTAC 4 cut(s) 107, 196, 625, 993
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 747
SaqAI TTAA 5 cut(s) 230, 588, 867, 1301, 1467
SatI GCNGC 5 cut(s) 413, 428, 597, 600, 1079
Sau3AI GATC 4 cut(s) 205, 645, 1026, 1127
Sau96I GGNCC 3 cut(s) 488, 871, 1117
SchI GAGTC 4 cut(s) 83, 474, 749, 1197
ScrFI CCNGG 3 cut(s) 50, 935, 1442
SduI GDGCHC 2 cut(s) 29, 973
SfaNI GCATC 1 cut(s) 1009
SfcI CTRYAG 1 cut(s) 600
SinI GGWCC 3 cut(s) 488, 871, 1117
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 955, 1073, 1300
SmoI CTYRAG 3 cut(s) 955, 1073, 1300
SphI GCATGC 1 cut(s) 419
SsiI CCGC 5 cut(s) 147, 491, 1079, 1342, 1364
SspI AATATT 2 cut(s) 316, 852
StyD4I CCNGG 3 cut(s) 48, 933, 1440
StyI CCWWGG 3 cut(s) 973, 1005, 1113
TaaI ACNGT 3 cut(s) 169, 817, 997
TaiI ACGT 1 cut(s) 1456
TaqI TCGA 1 cut(s) 1414
TatI WGTACW 2 cut(s) 106, 992
TauI GCSGC 1 cut(s) 1081
Tru1I TTAA 5 cut(s) 230, 588, 867, 1301, 1467
Tru9I TTAA 5 cut(s) 230, 588, 867, 1301, 1467
TscAI CASTG 2 cut(s) 21, 1002
TseFI GTSAC 2 cut(s) 565, 1067
TseI GCWGC 4 cut(s) 412, 427, 596, 599
Tsp45I GTSAC 2 cut(s) 565, 1067
TspDTI ATGAA 1 cut(s) 1451
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 2 cut(s) 21, 1002
Tth111I GACNNNGTC 1 cut(s) 223
Vha464I CTTAAG 1 cut(s) 1300
VpaK11BI GGWCC 3 cut(s) 488, 871, 1117
XagI CCTNNNNNAGG 1 cut(s) 1300
XapI RAATTY 3 cut(s) 445, 761, 1314
XceI RCATGY 3 cut(s) 44, 419, 698
XcmI CCANNNNNNNNNTGG 2 cut(s) 482, 1012
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 1050
ZraI GACGTC 1 cut(s) 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.