MD02G1196600.v1.1

Spinocerebellar ataxia type 10 protein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0003909
Physical Location & Seq
Forward (+)
18889495 .. 18891251
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1196600.v1.1.491

Sequence Viewer

Length: 792 bp
ATGGCTGGACAACGGCATCGGTGTGCAATTTGGCAGCGACTTTTTCCGAAAGAATTTGTTGCTATAGTAAGAGTTCAGAGCCGGGAAACTAGTGATCCCTTGTGCATGGTTATCTATGCTTGTTGTAATGGAAGCCCTGAACTGTTGGCCCAACTTTGTGGTGATCGTGGGATAACTATCCTGAAAAAGATTGTAAAGACTACGGCTGCAGGATTTTTTGGTGCTACTGAGAATGGCGAAGACACTGAATTTAGAGAAGACGTTTTCTCAACTGAGCAAGCATTTTTCTTGAGAAACATATCTGACATCTTGAATGAGCGGCTTCAAGAGATTACTGTGCCTAGTGATTTTGTACTGTGTGTCTTTGGGATATTTAAGAAATCTGTTGGGATTCTTAATTATGCTGCAAAAGGCAAGTCTGGACTTCCAACATGTTCTATTATGATAGATGTTCTAGGATTCTCACTCACAATCCTGAGAGATGTATGTGCTCAGAAGTTCGTAAGAGGCTCTAATGAGGACCTGGGGGATGCTGTTGATGTTTTGCTATCCCATGGCCTCATAGAATTTCTTTTATGTTTGATTCGTGATCTTGAGCCGACATCAGTAATGAGGAAAGCTATCAAGCAAGGTGAGGACCAAGATGGACCAAAGCCTTCTTCCTTAAAACCCTGCCCTTATAAAGGATTTCGGAGAGACATAGTGGCAGTCATTGGCAATTGCACATATAAAAGGAAGCTTGTACAAGATGAGATTAGACAAAAGGATGGGATTCTTTTGCTCTTGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Atx10homo_assoc

Protein Analysis

264

Amino Acids

29.3

Weight (kDa)

7.97

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Atx10homo_assoc PF09759 230 - 263 4.8e-07 Spinocerebellar ataxia type 10 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 1 cut(s) 319
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 3 cut(s) 53, 248, 566
AfaI GTAC 2 cut(s) 354, 744
AfiI CCNNNNNNNGG 1 cut(s) 683
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 2 cut(s) 313, 326
AhlI ACTAGT 1 cut(s) 89
AjnI CCWGG 1 cut(s) 522
AjuI GAANNNNNNNTTGG 2 cut(s) 643, 675
AluBI AGCT 2 cut(s) 620, 739
AluI AGCT 2 cut(s) 620, 739
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 1 cut(s) 89
AoxI GGCC 2 cut(s) 147, 556
ApeKI GCWGC 3 cut(s) 34, 206, 404
ApoI RAATTY 3 cut(s) 53, 248, 566
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspS9I GGNCC 4 cut(s) 148, 520, 637, 647
AsuC2I CCSGG 1 cut(s) 83
AsuHPI GGTGA 2 cut(s) 173, 644
AvaII GGWCC 3 cut(s) 520, 637, 647
BbsI GAAGAC 2 cut(s) 246, 264
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 46, 193, 391
BccI CCATC 2 cut(s) 638, 761
BceAI ACGGC 2 cut(s) 29, 219
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 690
BcuI ACTAGT 1 cut(s) 89
BfaI CTAG 3 cut(s) 90, 342, 455
BfmI CTRYAG 2 cut(s) 63, 207
BisI GCNGC 4 cut(s) 35, 207, 320, 405
BlsI GCNGC 4 cut(s) 36, 208, 321, 406
Bme1390I CCNGG 2 cut(s) 83, 524
Bme18I GGWCC 3 cut(s) 520, 637, 647
BmgT120I GGNCC 4 cut(s) 148, 520, 637, 647
BmrFI CCNGG 2 cut(s) 83, 524
BmsI GCATC 2 cut(s) 25, 520
BpiI GAAGAC 2 cut(s) 246, 264
BpuEI CTTGAG 2 cut(s) 310, 614
BpuMI CCSGG 1 cut(s) 83
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 523, 553
BseGI GGATG 2 cut(s) 535, 772
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMII CTCAG 4 cut(s) 219, 264, 467, 506
BseXI GCAGC 3 cut(s) 46, 193, 391
BshFI GGCC 2 cut(s) 149, 558
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 1 cut(s) 690
BsnI GGCC 2 cut(s) 149, 558
Bsp1286I GDGCHC 1 cut(s) 493
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 3 cut(s) 94, 163, 589
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 1 cut(s) 319
BspANI GGCC 2 cut(s) 149, 558
BspCNI CTCAG 4 cut(s) 220, 265, 468, 505
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 742
BssECI CCNNGG 2 cut(s) 523, 553
BssMI GATC 3 cut(s) 94, 163, 589
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 144, 337, 357
BstAUI TGTACA 1 cut(s) 742
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 4 cut(s) 228, 273, 476, 492
BstDSI CCRYGG 1 cut(s) 553
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 535, 772
BstKTI GATC 3 cut(s) 97, 166, 592
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 3 cut(s) 94, 163, 589
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 2 cut(s) 81, 522
BstSFI CTRYAG 2 cut(s) 63, 207
BstV1I GCAGC 3 cut(s) 46, 193, 391
BstV2I GAAGAC 2 cut(s) 246, 264
BstXI CCANNNNNNTGG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 149, 558
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 2 cut(s) 535, 772
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 4 cut(s) 148, 520, 637, 647
Csp6I GTAC 2 cut(s) 353, 743
CviAII CATG 3 cut(s) 106, 432, 554
CviQI GTAC 2 cut(s) 353, 743
DdeI CTNAG 4 cut(s) 228, 273, 476, 492
DpnI GATC 3 cut(s) 96, 165, 591
DpnII GATC 3 cut(s) 94, 163, 589
Eco130I CCWWGG 1 cut(s) 553
Eco47I GGWCC 3 cut(s) 520, 637, 647
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 109, 435, 557
FatI CATG 3 cut(s) 105, 431, 553
Fnu4HI GCNGC 4 cut(s) 35, 207, 320, 405
FokI GGATG 2 cut(s) 542, 779
Fsp4HI GCNGC 4 cut(s) 35, 207, 320, 405
FspBI CTAG 3 cut(s) 90, 342, 455
GluI GCNGC 4 cut(s) 35, 207, 320, 405
HaeIII GGCC 2 cut(s) 149, 558
HapII CCGG 1 cut(s) 82
Hin1II CATG 3 cut(s) 109, 435, 557
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 4 cut(s) 391, 459, 583, 772
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 173, 644
Hpy188I TCNGA 5 cut(s) 48, 78, 304, 495, 693
Hpy188III TCNNGA 8 cut(s) 181, 289, 310, 326, 420, 475, 587, 593
HpyAV CCTTC 1 cut(s) 666
HpyCH4III ACNGT 3 cut(s) 144, 337, 357
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 6 cut(s) 26, 105, 209, 407, 723, 787
HpyF3I CTNAG 4 cut(s) 228, 273, 476, 492
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 3 cut(s) 109, 435, 557
Kzo9I GATC 3 cut(s) 94, 163, 589
LpnPI CCDG 9 cut(s) 95, 150, 194, 195, 405, 488, 509, 536, 685
Lsp1109I GCAGC 3 cut(s) 46, 193, 391
LweI GCATC 2 cut(s) 25, 520
MaeI CTAG 3 cut(s) 90, 342, 455
MaeII ACGT 1 cut(s) 261
MalI GATC 3 cut(s) 96, 165, 591
MbiI CCGCTC 1 cut(s) 319
MboI GATC 3 cut(s) 94, 163, 589
MboII GAAGA 3 cut(s) 251, 269, 651
MfeI CAATTG 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 6 cut(s) 27, 53, 248, 397, 566, 718
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 5 cut(s) 500, 511, 569, 606, 628
MseI TTAA 3 cut(s) 375, 396, 665
MslI CAYNNNNRTG 1 cut(s) 21
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 83, 524
MunI CAATTG 1 cut(s) 718
MvaI CCWGG 1 cut(s) 524
NciI CCSGG 1 cut(s) 83
NcoI CCATGG 1 cut(s) 553
NdeII GATC 3 cut(s) 94, 163, 589
NlaIII CATG 3 cut(s) 109, 435, 557
NspI RCATGY 1 cut(s) 435
PciI ACATGT 1 cut(s) 431
PfeI GAWTC 4 cut(s) 391, 459, 583, 772
PkrI GCNGC 4 cut(s) 36, 208, 321, 406
PpuMI RGGWCCY 1 cut(s) 520
PscI ACATGT 1 cut(s) 431
PsiI TTATAA 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspPI GGNCC 4 cut(s) 148, 520, 637, 647
PspPPI RGGWCCY 1 cut(s) 520
PstI CTGCAG 1 cut(s) 211
RsaI GTAC 2 cut(s) 354, 744
RsaNI GTAC 2 cut(s) 353, 743
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 3 cut(s) 375, 396, 665
SatI GCNGC 4 cut(s) 35, 207, 320, 405
Sau3AI GATC 3 cut(s) 94, 163, 589
Sau96I GGNCC 4 cut(s) 148, 520, 637, 647
ScrFI CCNGG 2 cut(s) 83, 524
SduI GDGCHC 1 cut(s) 493
SetI ASST 5 cut(s) 264, 525, 622, 634, 741
SfaNI GCATC 2 cut(s) 25, 520
SfcI CTRYAG 2 cut(s) 63, 207
SinI GGWCC 3 cut(s) 520, 637, 647
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 2 cut(s) 289, 593
SmoI CTYRAG 2 cut(s) 289, 593
SpeI ACTAGT 1 cut(s) 89
Sse9I AATT 6 cut(s) 27, 53, 248, 397, 566, 718
SsiI CCGC 1 cut(s) 319
SspMI CTAG 3 cut(s) 90, 342, 455
StyD4I CCNGG 2 cut(s) 81, 522
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 144, 337, 357
TaiI ACGT 1 cut(s) 264
TasI AATT 6 cut(s) 27, 53, 248, 397, 566, 718
TatI WGTACW 2 cut(s) 352, 742
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 4 cut(s) 391, 459, 583, 772
Tru1I TTAA 3 cut(s) 375, 396, 665
Tru9I TTAA 3 cut(s) 375, 396, 665
TscAI CASTG 1 cut(s) 250
TseI GCWGC 3 cut(s) 34, 206, 404
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 3 cut(s) 520, 637, 647
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 3 cut(s) 53, 248, 566
XceI RCATGY 1 cut(s) 435
XspI CTAG 3 cut(s) 90, 342, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.