Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003909

Physical Location & Seq

Genomic Coordinates Reverse (-)

20693607 .. 20696127

Gene Structure 2521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G152200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGATAAAACCGCATTGCAAGAGTTCTTTGTACCTGAAGATGTTCTCCAGATACTTTTAAGTGCGTCAAACTCATCTACCCTCATAGATTCGTTGGAAACTTTAATACAAGTTTGCAGAGCAGCTGATGGTCGTGCGGACCTTGCCTCTAAGAGTATTCTTCCTTCTGTTGTCCAGCTCATCCAATCTCTCCCTTACCCTTCTGGTCGCCACCTTCTCACATTGTCATTAAAGCTCCTGAGAAATCTTTGTGCGGGAGAGGTTTCAAATCAGAAGTCATTTCTTGAACAAAGTGGAGTTGCAATCATATCGAATGTTTTGAACTCTGCGAATATTTCTTTGGAGCCAGATTCTGGGGTCATTCGTATGGGGTTGCAAGTTCTTGCTAATGTTTCTTTGGCTGGAGAACGACATCAGCATGAAATTTGGCAGCAACTTTTTCCAAAAGAATTTTTGGCTCTTGCAAGAGTTCAGAGCCGGGAAACTTGTGATCCATTGTGCATGGTTATCTTTGCTTGTTGTGATGGAAGCCCTGAACTGTTCGAAAAGCTTTGCGGTGATGGTGGAATAACTATTATGAAAGAGATTGTAAGGACTACTGCTGCAGTTGGCTTTGGAGAAGATTGGGTCAAGTTGCTTCTCTCAAGAATCTGTTTAGAAGGACCTTACTTCTCGTCACTGTTCTCTAATTTAGGCTTTGCTACTAGTGAGAATGTTGAAGATACTGAATTTAGAGAAGACCTTTTCTCATCAGACCAAGCATTTTTCTTGAGAATCATATCAGACATCTTAAATGAGCGGCTTAGAGAGATTACTGTCCCTCGTGATTTTGCTTTGTGTGTTTTTGGGATATTCAAGAAATCCGTTGGGGCTCTTAATTGTGTAACAAGGGGCCAGTCTGGACTTCCAACAGGCACTAGTATGATAGACGTTCTAGGATACTCACTCACAATTCTGAGAGATGTATGTGCCCAGAAGACTTTAAGAGGCTTTCAAGAGGACCTGGGGGATGCTGTTGATGTTTTGCTATCCCATGGTCTTATAGAACTAATTTTATGTTTACTTCGTGATCTTGAGCCGCCAGCAATAATTAGGAAAGCTATCAAACAAGGTGAGGGCCAAGATGGAACAAATTCGGGTTCGTCAAAACCATGCCCGTACAAAGGATTTCGAAGAGATATAGTTGCAGTGATTGGCAATTGCACATATCAAAGGAAGCCTGTCCAAGATGAGATTAGGCAAAGGGATGGGATTCTTCTGCTCTTGCAACAGTGTGGTCTTGATGAAGACAACCCGTTCTTAAAGGAGTGGGGAATTTGGTGTGTCAGAAATTTATTGGAAGGGAATGAAGACAACAAACGGGTAGTGACTGAATTGGAGCTTCAAGGGTCTGTTGATGCGCCAGAAATTGCTGGACTTGGTTTCCGAGTTGAGGTAAATCCAGAAACTGGACGGCCAAAGCTTGTTAATGTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Atx10homo_assoc

Protein Analysis

493

Amino Acids

54.18

Weight (kDa)

4.92

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00231
fragaria_vesca	FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g08540 FvH4_7g12770 FvH4_7g12770
malus_domestica	MD02G1196600.v1.1 MD07G1124700.v1.1 MD07G1124800.v1.1 MD15G1435200.v1.1
prunus_persica	Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1 Prupe.2G152200_v2.0.a1
pyrus_communis	pycom02g16000
rosa_chinensis	RchiOBHm_Chr1g0313121 RchiOBHm_Chr1g0351801
rosa_laevigata	RLG00000028382 RLG00000030821 RLG00000030822
rosa_roxburghii	Rroxscaffold_4G00303530
rosa_rugosa	Rorug01G0221700
rosa_samantha	Rh1AG000900 Rh1AG235600 Rh1BG206000 Rh1CG003100 Rh1CG005300 Rh1CG220200 Rh1DG000700 Rh1DG233100
rosa_wichuraiana	Rw1G000010 Rw1G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	353, 1448
AccBSI	CCGCTC	1 cut(s)	799
AciI	CCGC	6 cut(s)	12, 137, 254, 555, 799, 1079
AclWI	GGATC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	1454
AcsI	RAATTY	6 cut(s)	423, 449, 728, 1132, 1314, 1330
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	33, 1160
AfiI	CCNNNNNNNGG	4 cut(s)	353, 1163, 1432, 1448
AgsI	TTSAA	7 cut(s)	267, 287, 322, 719, 856, 995, 1385
AhlI	ACTAGT	2 cut(s)	704, 917
AjnI	CCWGG	1 cut(s)	1002
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	7 cut(s)	125, 178, 235, 550, 1100, 1381, 1462
AluI	AGCT	7 cut(s)	125, 178, 235, 550, 1100, 1381, 1462
AlwI	GGATC	1 cut(s)	485
AlwNI	CAGNNNCTG	2 cut(s)	353, 1448
AoxI	GGCC	3 cut(s)	892, 1117, 1454
ApeKI	GCWGC	3 cut(s)	122, 430, 602
ApoI	RAATTY	6 cut(s)	423, 449, 728, 1132, 1314, 1330
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	2 cut(s)	42, 1132
AspLEI	GCGC	1 cut(s)	1402
AspS9I	GGNCC	5 cut(s)	139, 662, 892, 1000, 1117
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	569, 1124
AsuII	TTCGAA	2 cut(s)	543, 1171
AvaII	GGWCC	3 cut(s)	139, 662, 1000
BaeGI	GKGCMC	1 cut(s)	973
BanII	GRGCYC	1 cut(s)	874
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
BauI	CACGAG	1 cut(s)	822
BbsI	GAAGAC	4 cut(s)	744, 983, 1293, 1356
BbvI	GCAGC	3 cut(s)	134, 442, 589
BccI	CCATC	5 cut(s)	122, 518, 554, 1118, 1241
BceAI	ACGGC	1 cut(s)	1469
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	1 cut(s)	1004
BciVI	GTATCC	1 cut(s)	932
BcnI	CCSGG	1 cut(s)	479
BcuI	ACTAGT	2 cut(s)	704, 917
BfaI	CTAG	3 cut(s)	705, 918, 935
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	1 cut(s)	932
BisI	GCNGC	5 cut(s)	123, 431, 603, 800, 1079
BlsI	GCNGC	5 cut(s)	124, 432, 604, 801, 1080
Bme1390I	CCNGG	2 cut(s)	479, 1004
Bme18I	GGWCC	3 cut(s)	139, 662, 1000
BmgT120I	GGNCC	5 cut(s)	139, 662, 892, 1000, 1117
BmiI	GGNNCC	2 cut(s)	345, 893
BmrFI	CCNGG	2 cut(s)	479, 1004
BmsI	GCATC	2 cut(s)	1000, 1387
BpiI	GAAGAC	4 cut(s)	744, 983, 1293, 1356
BpmI	CTGGAG	2 cut(s)	32, 423
Bpu14I	TTCGAA	2 cut(s)	543, 1171
BpuEI	CTTGAG	3 cut(s)	628, 790, 1094
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	1003, 1033
Bsc4I	CCNNNNNNNGG	4 cut(s)	353, 1163, 1432, 1448
Bse1I	ACTGG	2 cut(s)	895, 1453
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	1004
BseDI	CCNNGG	2 cut(s)	1003, 1033
BseGI	GGATG	3 cut(s)	180, 1015, 1252
BseLI	CCNNNNNNNGG	4 cut(s)	353, 1163, 1432, 1448
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	2 cut(s)	230, 947
BseNI	ACTGG	2 cut(s)	895, 1453
BseSI	GKGCMC	1 cut(s)	973
BseXI	GCAGC	3 cut(s)	134, 442, 589
BshFI	GGCC	3 cut(s)	894, 1119, 1456
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	803
BslI	CCNNNNNNNGG	4 cut(s)	353, 1163, 1432, 1448
BsmFI	GGGAC	1 cut(s)	803
BsnI	GGCC	3 cut(s)	894, 1119, 1456
Bsp119I	TTCGAA	2 cut(s)	543, 1171
Bsp1286I	GDGCHC	2 cut(s)	874, 973
Bsp143I	GATC	2 cut(s)	490, 1069
Bsp19I	CCATGG	1 cut(s)	1033
BspACI	CCGC	6 cut(s)	12, 137, 254, 555, 799, 1079
BspANI	GGCC	3 cut(s)	894, 1119, 1456
BspCNI	CTCAG	2 cut(s)	231, 948
BspHI	TCATGA	1 cut(s)	1475
BspLI	GGNNCC	2 cut(s)	345, 893
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	1 cut(s)	485
BspT104I	TTCGAA	2 cut(s)	543, 1171
BsrBI	CCGCTC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	895, 1453
BssECI	CCNNGG	2 cut(s)	1003, 1033
BssMI	GATC	2 cut(s)	490, 1069
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	1 cut(s)	1033
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	1 cut(s)	1004
Bst4CI	ACNGT	4 cut(s)	540, 681, 817, 1272
Bst6I	CTCTTC	1 cut(s)	1168
BstBI	TTCGAA	2 cut(s)	543, 1171
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	4 cut(s)	150, 239, 803, 956
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	3 cut(s)	180, 1015, 1252
BstHHI	GCGC	1 cut(s)	1402
BstKTI	GATC	2 cut(s)	493, 1072
BstMBI	GATC	2 cut(s)	490, 1069
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	1004
BstSCI	CCNGG	2 cut(s)	477, 1002
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	973
BstV1I	GCAGC	3 cut(s)	134, 442, 589
BstV2I	GAAGAC	4 cut(s)	744, 983, 1293, 1356
BsuI	GTATCC	1 cut(s)	932
BsuRI	GGCC	3 cut(s)	894, 1119, 1456
BtgI	CCRYGG	1 cut(s)	1033
BtsCI	GGATG	3 cut(s)	180, 1015, 1252
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	3 cut(s)	677, 1194, 1277
Cac8I	GCNNGC	1 cut(s)	1083
CaiI	CAGNNNCTG	2 cut(s)	353, 1448
CciI	TCATGA	1 cut(s)	1475
CfoI	GCGC	1 cut(s)	1402
Cfr13I	GGNCC	5 cut(s)	139, 662, 892, 1000, 1117
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	32, 1159
CviAII	CATG	5 cut(s)	419, 502, 1034, 1152, 1476
CviQI	GTAC	2 cut(s)	32, 1159
DdeI	CTNAG	4 cut(s)	150, 239, 803, 956
DpnI	GATC	2 cut(s)	492, 1071
DpnII	GATC	2 cut(s)	490, 1069
EaeI	YGGCCR	1 cut(s)	1454
Eam1104I	CTCTTC	1 cut(s)	1168
EarI	CTCTTC	1 cut(s)	1168
Eco130I	CCWWGG	1 cut(s)	1033
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	3 cut(s)	139, 662, 1000
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	2 cut(s)	662, 1000
EcoRII	CCWGG	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	1033
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	1033
FaeI	CATG	5 cut(s)	422, 505, 1037, 1155, 1479
FaqI	GGGAC	1 cut(s)	803
FatI	CATG	5 cut(s)	418, 501, 1033, 1151, 1475
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	5 cut(s)	123, 431, 603, 800, 1079
FokI	GGATG	3 cut(s)	167, 1022, 1259
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	5 cut(s)	123, 431, 603, 800, 1079
FspBI	CTAG	3 cut(s)	705, 918, 935
GlaI	GCGC	1 cut(s)	1401
GluI	GCNGC	5 cut(s)	123, 431, 603, 800, 1079
GsuI	CTGGAG	2 cut(s)	32, 423
HaeIII	GGCC	3 cut(s)	894, 1119, 1456
HapII	CCGG	1 cut(s)	478
HgaI	GACGC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	1402
Hin1II	CATG	5 cut(s)	422, 505, 1037, 1155, 1479
Hin6I	GCGC	1 cut(s)	1400
HinP1I	GCGC	1 cut(s)	1400
HindIII	AAGCTT	2 cut(s)	548, 1460
HinfI	GANTC	5 cut(s)	89, 350, 648, 774, 1252
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	2 cut(s)	569, 1124
Hpy166II	GTNNAC	1 cut(s)	1061
Hpy188I	TCNGA	7 cut(s)	273, 474, 754, 784, 957, 1328, 1427
Hpy8I	GTNNAC	1 cut(s)	1061
HpyAV	CCTTC	5 cut(s)	174, 210, 224, 653, 1334
HpyCH4III	ACNGT	4 cut(s)	540, 681, 817, 1272
HpyCH4IV	ACGT	1 cut(s)	930
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	4 cut(s)	150, 239, 803, 956
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	5 cut(s)	422, 505, 1037, 1155, 1479
HspAI	GCGC	1 cut(s)	1400
Kzo9I	GATC	2 cut(s)	490, 1069
LmnI	GCTCC	3 cut(s)	240, 343, 1378
Lsp1109I	GCAGC	3 cut(s)	134, 442, 589
LweI	GCATC	2 cut(s)	1000, 1387
MaeI	CTAG	3 cut(s)	705, 918, 935
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	3 cut(s)	675, 883, 1366
MalI	GATC	2 cut(s)	492, 1071
MbiI	CCGCTC	1 cut(s)	799
MboI	GATC	2 cut(s)	490, 1069
MfeI	CAATTG	1 cut(s)	1198
MhlI	GDGCHC	2 cut(s)	874, 973
MmeI	TCCRAC	2 cut(s)	75, 932
MnlI	CCTC	8 cut(s)	92, 157, 253, 831, 980, 991, 1108, 1426
MroXI	GAANNNNTTC	2 cut(s)	42, 1132
MseI	TTAA	8 cut(s)	59, 104, 230, 791, 876, 983, 1301, 1467
MslI	CAYNNNNRTG	3 cut(s)	365, 417, 920
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	2 cut(s)	479, 1004
MunI	CAATTG	1 cut(s)	1198
MvaI	CCWGG	1 cut(s)	1004
MwoI	GCNNNNNNNGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	1033
NdeII	GATC	2 cut(s)	490, 1069
NlaIII	CATG	5 cut(s)	422, 505, 1037, 1155, 1479
NlaIV	GGNNCC	2 cut(s)	345, 893
NmuCI	GTSAC	2 cut(s)	675, 1366
NspV	TTCGAA	2 cut(s)	543, 1171
PagI	TCATGA	1 cut(s)	1475
PdmI	GAANNNNTTC	2 cut(s)	42, 1132
PfeI	GAWTC	5 cut(s)	89, 350, 648, 774, 1252
PflMI	CCANNNNNTGG	2 cut(s)	353, 1448
PkrI	GCNGC	5 cut(s)	124, 432, 604, 801, 1080
PpuMI	RGGWCCY	2 cut(s)	662, 1000
Psp5II	RGGWCCY	2 cut(s)	662, 1000
Psp6I	CCWGG	1 cut(s)	1002
PspGI	CCWGG	1 cut(s)	1002
PspN4I	GGNNCC	2 cut(s)	345, 893
PspPI	GGNCC	5 cut(s)	139, 662, 892, 1000, 1117
PspPPI	RGGWCCY	2 cut(s)	662, 1000
PstI	CTGCAG	1 cut(s)	607
PstNI	CAGNNNCTG	2 cut(s)	353, 1448
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	33, 1160
RsaNI	GTAC	2 cut(s)	32, 1159
RseI	CAYNNNNRTG	3 cut(s)	365, 417, 920
SaqAI	TTAA	8 cut(s)	59, 104, 230, 791, 876, 983, 1301, 1467
SatI	GCNGC	5 cut(s)	123, 431, 603, 800, 1079
Sau3AI	GATC	2 cut(s)	490, 1069
Sau96I	GGNCC	5 cut(s)	139, 662, 892, 1000, 1117
ScrFI	CCNGG	2 cut(s)	479, 1004
SduI	GDGCHC	2 cut(s)	874, 973
SfaNI	GCATC	2 cut(s)	1000, 1387
SfcI	CTRYAG	1 cut(s)	603
SfuI	TTCGAA	2 cut(s)	543, 1171
SinI	GGWCC	3 cut(s)	139, 662, 1000
SmiMI	CAYNNNNRTG	3 cut(s)	365, 417, 920
SmlI	CTYRAG	3 cut(s)	643, 769, 1073
SmoI	CTYRAG	3 cut(s)	643, 769, 1073
SpeI	ACTAGT	2 cut(s)	704, 917
SsiI	CCGC	6 cut(s)	12, 137, 254, 555, 799, 1079
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	3 cut(s)	705, 918, 935
StyD4I	CCNGG	2 cut(s)	477, 1002
StyI	CCWWGG	1 cut(s)	1033
TaaI	ACNGT	4 cut(s)	540, 681, 817, 1272
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	3 cut(s)	311, 543, 1171
TauI	GCSGC	2 cut(s)	802, 1081
TfiI	GAWTC	5 cut(s)	89, 350, 648, 774, 1252
Tru1I	TTAA	8 cut(s)	59, 104, 230, 791, 876, 983, 1301, 1467
Tru9I	TTAA	8 cut(s)	59, 104, 230, 791, 876, 983, 1301, 1467
TscAI	CASTG	3 cut(s)	684, 1194, 1277
TseFI	GTSAC	2 cut(s)	675, 1366
TseI	GCWGC	3 cut(s)	122, 430, 602
Tsp45I	GTSAC	2 cut(s)	675, 1366
TspDTI	ATGAA	4 cut(s)	435, 593, 1299, 1362
TspGWI	ACGGA	1 cut(s)	853
TspRI	CASTG	3 cut(s)	684, 1194, 1277
Van91I	CCANNNNNTGG	2 cut(s)	353, 1448
VpaK11BI	GGWCC	3 cut(s)	139, 662, 1000
XapI	RAATTY	6 cut(s)	423, 449, 728, 1132, 1314, 1330
XmnI	GAANNNNTTC	2 cut(s)	42, 1132
XspI	CTAG	3 cut(s)	705, 918, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.