AT5G20820

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011852
Physical Location & Seq
Reverse (-)
7046747 .. 7047446
700 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G20820.1

Sequence Viewer

Length: 384 bp
ATGGCGAAAGGAGGAAACAAACTGATGAAGCTGAAATCAGTTTTGAAGAAACTCAATTCATTCAACACCAAGCCTAACCAGCCACCAGCTCAAACCAATCACAGCCGATCCTCCGCCGTGAGTGCGTTCCCCTCTGAAGACCTTCAAACTGTCTACGTAGGCCGAACACGGAGGACATACCACGTGAGCTCCGATGTCGTGAGCCACCCGCTCTTCCAGCAGCTAGCGGCGGTGGATGGTGGATGCGGCAGCGAGGACGGTTCCATCTCTGTGTCGTGCGAAGTTGTCTTGTTTGAGCATTTGCTTTGGATGTTGGAGAACGCCGACGCCGATGAGTCACGCCCCGAGTCGGTCTACGAACTTGTCGAGTTCTACGCTTGTTAA

Protein Analysis

127

Amino Acids

13.98

Weight (kDa)

5.75

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 11 - 105 7.2e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AccI GTMKAC 2 cut(s) 153, 354
AciI CCGC 5 cut(s) 114, 209, 227, 230, 246
AclWI GGATC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 156
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 3 cut(s) 46, 64, 146
AluBI AGCT 4 cut(s) 31, 89, 189, 223
AluI AGCT 4 cut(s) 31, 89, 189, 223
Alw21I GWGCWC 1 cut(s) 191
AlwI GGATC 1 cut(s) 102
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 220, 249
Asp700I GAANNNNTTC 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 344
BanII GRGCYC 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 232, 261
BccI CCATC 2 cut(s) 230, 272
BceAI ACGGC 1 cut(s) 101
BfaI CTAG 1 cut(s) 224
BisI GCNGC 4 cut(s) 221, 228, 247, 250
BlsI GCNGC 4 cut(s) 222, 229, 248, 251
BmeT110I CYCGRG 1 cut(s) 344
BmiI GGNNCC 1 cut(s) 262
BmsI GCATC 1 cut(s) 233
BmtI GCTAGC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 144
BsaAI YACGTR 2 cut(s) 157, 184
BsaHI GRCGYC 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 349
BseGI GGATG 3 cut(s) 241, 248, 315
BseLI CCNNNNNNNGG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 232, 261
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 349
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 5 cut(s) 114, 209, 227, 230, 246
BspANI GGCC 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 102
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 211
BssMI GATC 1 cut(s) 107
BssNI GRCGYC 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 151, 260
Bst6I CTCTTC 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 327
BstBAI YACGTR 2 cut(s) 157, 184
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 3 cut(s) 241, 248, 315
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 3 cut(s) 79, 122, 217
BstSNI TACGTA 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 232, 261
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 3 cut(s) 241, 248, 315
Cac8I GCNNGC 1 cut(s) 225
CseI GACGC 1 cut(s) 335
CviJI RGCY 9 cut(s) 31, 73, 82, 89, 105, 162, 189, 204, 223
CviKI_1 RGCY 9 cut(s) 31, 73, 82, 89, 105, 162, 189, 204, 223
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
EciI GGCGGA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 189
Eco105I TACGTA 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 156
Eco72I CACGTG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 191
FaiI YATR 1 cut(s) 178
FauI CCCGC 1 cut(s) 216
FblI GTMKAC 2 cut(s) 153, 354
Fnu4HI GCNGC 4 cut(s) 221, 228, 247, 250
FokI GGATG 3 cut(s) 248, 255, 322
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 221, 228, 247, 250
FspBI CTAG 1 cut(s) 224
GluI GCNGC 4 cut(s) 221, 228, 247, 250
HaeIII GGCC 1 cut(s) 162
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 327
HinfI GANTC 2 cut(s) 335, 347
Hpy166II GTNNAC 2 cut(s) 154, 355
Hpy188I TCNGA 2 cut(s) 136, 193
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 2 cut(s) 154, 355
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 151, 260
HpyCH4IV ACGT 2 cut(s) 156, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 122, 217
HpySE526I ACGT 2 cut(s) 156, 183
Hsp92I GRCGYC 1 cut(s) 327
Kzo9I GATC 1 cut(s) 107
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 3 cut(s) 92, 99, 230
Lsp1109I GCAGC 2 cut(s) 232, 261
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 224
MaeII ACGT 2 cut(s) 156, 183
MaeIII GTNAC 1 cut(s) 336
MalI GATC 1 cut(s) 109
MbiI CCGCTC 1 cut(s) 211
MboI GATC 1 cut(s) 107
MboII GAAGA 3 cut(s) 58, 149, 205
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 55
MlyI GAGTC 2 cut(s) 344, 356
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 5, 121, 142, 165, 247
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 1 cut(s) 382
MslI CAYNNNNRTG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 79, 122, 217
NdeII GATC 1 cut(s) 107
NheI GCTAGC 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 3 cut(s) 189, 327, 363
PdmI GAANNNNTTC 1 cut(s) 141
PkrI GCNGC 4 cut(s) 222, 229, 248, 251
PleI GAGTC 2 cut(s) 343, 355
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 2 cut(s) 343, 355
Ppu21I YACGTR 2 cut(s) 157, 184
Psp124BI GAGCTC 1 cut(s) 191
PspCI CACGTG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 4 cut(s) 221, 228, 247, 250
Sau3AI GATC 1 cut(s) 107
SchI GAGTC 2 cut(s) 344, 356
SduI GDGCHC 1 cut(s) 191
SetI ASST 7 cut(s) 33, 91, 144, 159, 186, 191, 225
SfaNI GCATC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 269
SnaBI TACGTA 1 cut(s) 157
Sse9I AATT 1 cut(s) 55
SsiI CCGC 5 cut(s) 114, 209, 227, 230, 246
SspMI CTAG 1 cut(s) 224
SstI GAGCTC 1 cut(s) 191
TaaI ACNGT 2 cut(s) 151, 260
TaiI ACGT 2 cut(s) 159, 186
TaqI TCGA 1 cut(s) 366
TaqII GACCGA 1 cut(s) 340
TasI AATT 1 cut(s) 55
TauI GCSGC 2 cut(s) 230, 249
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 2 cut(s) 220, 249
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 41, 48
TspGWI ACGGA 1 cut(s) 184
XmiI GTMKAC 2 cut(s) 153, 354
XmnI GAANNNNTTC 1 cut(s) 141
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.