Rh2DG104200

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011852
Physical Location & Seq
Reverse (-)
8517676 .. 8518512
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG104200.1

Sequence Viewer

Length: 372 bp
ATGGCGAAAGGTGGAAAGCTACTGAAGCTCAAGTCGGTCCTCAAGAAGTGGAACTCATTCAGCAAAAGCAACCGCCACAGCATCAACTCTGTAGCCTCCGCCGACGACGACAGCTACTCTTCCTCCAACGACGTCGTCTCCTCCAGAGACCTCCAACCAGTCTACGTCGGCAAGTCCCGAAGACGCTACCTCGTGGGCCCCGACGTCGTCGACCACCCCCTCTTCAAGGAACTGGCGGAGAGATCCTCAGACGACGACACAATCAATGTCGCATGTGAGGTGGTGCTGTTCGAGCACCTGCTCTGGATGCTCGAAAACGCCGATCCTCAGCCGGAATCGATGGACGAACTCGTCGAGTTCTACGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

123

Amino Acids

13.87

Weight (kDa)

5.12

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 104 4e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 306
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 2 cut(s) 135, 207
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 2 cut(s) 162, 210
AciI CCGC 3 cut(s) 73, 99, 236
AclWI GGATC 2 cut(s) 237, 317
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 132, 204
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 3 cut(s) 19, 28, 114
AluI AGCT 3 cut(s) 19, 28, 114
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 141, 142
AlwI GGATC 2 cut(s) 237, 317
AoxI GGCC 1 cut(s) 196
ApaI GGGCCC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 3 cut(s) 37, 196, 197
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 141, 142
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 3 cut(s) 37, 196, 197
BmiI GGNNCC 2 cut(s) 198, 199
BmsI GCATC 2 cut(s) 90, 297
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 14, 26
Bsa29I ATCGAT 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 132, 204
BsaI GGTCTC 1 cut(s) 141
BsaXI ACNNNNNCTCC 4 cut(s) 107, 122, 137, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 2 cut(s) 158, 237
BseCI ATCGAT 1 cut(s) 338
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 2 cut(s) 261, 341
BseNI ACTGG 2 cut(s) 158, 237
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 200
BshFI GGCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 141, 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 198
Bso31I GGTCTC 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 200, 297
Bsp143I GATC 2 cut(s) 242, 322
BspACI CCGC 3 cut(s) 73, 99, 236
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 260, 340
BspDI ATCGAT 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 198, 199
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 237, 317
BspTNI GGTCTC 1 cut(s) 141
BsrI ACTGG 2 cut(s) 158, 237
BssMI GATC 2 cut(s) 242, 322
BssNI GRCGYC 2 cut(s) 132, 204
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 124, 227
BstACI GRCGYC 2 cut(s) 132, 204
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 2 cut(s) 247, 327
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 2 cut(s) 245, 325
BstMAI GTCTC 2 cut(s) 141, 142
BstMBI GATC 2 cut(s) 242, 322
BstMWI GCNNNNNNNGC 3 cut(s) 25, 292, 307
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 338
BsuRI GGCC 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 338
BtsCI GGATG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 37, 196, 197
ClaI ATCGAT 1 cut(s) 338
CseI GACGC 1 cut(s) 192
CviAII CATG 1 cut(s) 273
CviJI RGCY 6 cut(s) 19, 28, 95, 114, 198, 331
CviKI_1 RGCY 6 cut(s) 19, 28, 95, 114, 198, 331
DdeI CTNAG 2 cut(s) 247, 327
DpnI GATC 2 cut(s) 244, 324
DpnII GATC 2 cut(s) 242, 322
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
Eam1104I CTCTTC 2 cut(s) 124, 227
EarI CTCTTC 2 cut(s) 124, 227
EciI GGCGGA 2 cut(s) 88, 251
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 1 cut(s) 276
FaiI YATR 1 cut(s) 274
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 272
FblI GTMKAC 2 cut(s) 162, 210
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 2 cut(s) 132, 204
Hin1II CATG 1 cut(s) 276
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 163, 211
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 4 cut(s) 43, 144, 177, 304
Hpy8I GTNNAC 2 cut(s) 163, 211
HpyCH4IV ACGT 3 cut(s) 132, 165, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 292, 307
HpyF3I CTNAG 2 cut(s) 247, 327
HpySE526I ACGT 3 cut(s) 132, 165, 204
Hsp92I GRCGYC 2 cut(s) 132, 204
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 242, 322
LpnPI CCDG 6 cut(s) 157, 171, 218, 289, 311, 345
LweI GCATC 2 cut(s) 90, 297
MaeII ACGT 3 cut(s) 132, 165, 204
MalI GATC 2 cut(s) 244, 324
MboI GATC 2 cut(s) 242, 322
MboII GAAGA 3 cut(s) 111, 192, 214
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 2 cut(s) 200, 297
MmeI TCCRAC 2 cut(s) 150, 178
MroXI GAANNNNTTC 1 cut(s) 56
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 25, 292, 307
NdeII GATC 2 cut(s) 242, 322
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 2 cut(s) 198, 199
NspI RCATGY 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 318, 351
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 2 cut(s) 134, 206
PspN4I GGNNCC 2 cut(s) 198, 199
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 3 cut(s) 37, 196, 197
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 2 cut(s) 134, 206
SalI GTCGAC 1 cut(s) 209
Sau3AI GATC 2 cut(s) 242, 322
Sau96I GGNCC 3 cut(s) 37, 196, 197
SduI GDGCHC 2 cut(s) 200, 297
SfaNI GCATC 2 cut(s) 90, 297
SfcI CTRYAG 1 cut(s) 90
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 29, 41
SmoI CTYRAG 2 cut(s) 29, 41
SsiI CCGC 3 cut(s) 73, 99, 236
TaiI ACGT 3 cut(s) 135, 168, 207
TaqI TCGA 5 cut(s) 210, 291, 312, 338, 354
TaqII GACCGA 1 cut(s) 25
TfiI GAWTC 1 cut(s) 335
Tth111I GACNNNGTC 2 cut(s) 134, 206
VpaK11BI GGWCC 1 cut(s) 37
XagI CCTNNNNNAGG 1 cut(s) 224
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 2 cut(s) 162, 210
XmnI GAANNNNTTC 1 cut(s) 56
ZraI GACGTC 2 cut(s) 133, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.