MD02G1100200.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011852
Physical Location & Seq
Reverse (-)
7980868 .. 7981233
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1100200.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCCAAAGGTGGGAAGCTAACAAAGCTCAAGTCAGTGCTGAAGAAGTGGAACTCCTTCAGCAAGCAGAACAGCCGCCGCAGCCTCAACTCCGTGGTCTCCGCCGCGGATGAAGATTACTCCACCGACGTAATAATTTCAGGAGACCTCCGCCCCGTCTATGTGGGCAAGTCCAGAAGACGTTACCTTGTGGCCTCCGACGTCGTAGACCACCCGCTTTTCAAGGAGCTGGCCGACAGGTCAGACGACGACACGATCAACGTCGCATGCGAGGTGGTGCTGTTCGAGCACTTGTTGTGGATGATCGAGAATGCCGATCCACAGCCCGAGTCAATGGACGAGTTAGTCGAGTTCTATGCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

122

Amino Acids

13.71

Weight (kDa)

5.14

Isoelectric Point (pI)

57.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 102 5.8e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AatII GACGTC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 107
AciI CCGC 7 cut(s) 76, 79, 102, 105, 107, 151, 215
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 3, 231
AcuI CTGAAG 2 cut(s) 43, 62
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 19, 28, 229
AluI AGCT 3 cut(s) 19, 28, 229
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 103, 138
AlwI GGATC 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 3 cut(s) 3, 192, 231
ApeKI GCWGC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 326
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 93
BcgI CGANNNNNNTGC 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 103, 138
BisI GCNGC 4 cut(s) 76, 79, 82, 105
BlsI GCNGC 4 cut(s) 77, 80, 83, 106
BmeT110I CYCGRG 1 cut(s) 326
BpiI GAAGAC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 2 cut(s) 103, 138
BsaJI CCNNGG 2 cut(s) 93, 105
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 93, 105
BseGI GGATG 2 cut(s) 115, 306
BseLI CCNNNNNNNGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 5, 194, 233
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 103, 138
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 5, 194, 233
Bso31I GGTCTC 2 cut(s) 103, 138
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 255, 303, 316
BspACI CCGC 7 cut(s) 76, 79, 102, 105, 107, 151, 215
BspANI GGCC 3 cut(s) 5, 194, 233
BspFNI CGCG 1 cut(s) 107
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 2 cut(s) 103, 138
BssECI CCNNGG 2 cut(s) 93, 105
BssMI GATC 3 cut(s) 255, 303, 316
BssNI GRCGYC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 4 cut(s) 65, 231, 268, 361
BstDSI CCRYGG 2 cut(s) 93, 105
BstF5I GGATG 2 cut(s) 115, 306
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 3 cut(s) 258, 306, 319
BstMAI GTCTC 2 cut(s) 103, 138
BstMBI GATC 3 cut(s) 255, 303, 316
BstMWI GCNNNNNNNGC 3 cut(s) 25, 81, 286
BstNSI RCATGY 1 cut(s) 270
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 3 cut(s) 5, 194, 233
BtgI CCRYGG 2 cut(s) 93, 105
BtsCI GGATG 2 cut(s) 115, 306
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 4 cut(s) 65, 231, 268, 361
Cfr42I CCGCGG 1 cut(s) 108
CviAII CATG 1 cut(s) 267
CviJI RGCY 9 cut(s) 5, 19, 28, 75, 84, 194, 229, 233, 325
CviKI_1 RGCY 9 cut(s) 5, 19, 28, 75, 84, 194, 229, 233, 325
DpnI GATC 3 cut(s) 257, 305, 318
DpnII GATC 3 cut(s) 255, 303, 316
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 3, 231
EciI GGCGGA 2 cut(s) 91, 140
Eco31I GGTCTC 2 cut(s) 103, 138
Eco57I CTGAAG 2 cut(s) 43, 62
Eco88I CYCGRG 1 cut(s) 326
FaeI CATG 1 cut(s) 270
FaiI YATR 3 cut(s) 162, 268, 357
FatI CATG 1 cut(s) 266
FauI CCCGC 1 cut(s) 222
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 76, 79, 82, 105
FokI GGATG 2 cut(s) 122, 313
Fsp4HI GCNGC 4 cut(s) 76, 79, 82, 105
GluI GCNGC 4 cut(s) 76, 79, 82, 105
HaeIII GGCC 3 cut(s) 5, 194, 233
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 199, 244
Hpy188III TCNNGA 3 cut(s) 141, 174, 307
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 5 cut(s) 131, 203, 206, 251, 266
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 4 cut(s) 129, 181, 201, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 81, 286
HpySE526I ACGT 4 cut(s) 129, 181, 201, 261
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 270
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 3 cut(s) 255, 303, 316
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 126, 187, 215, 223
Lsp1109I GCAGC 1 cut(s) 93
MaeII ACGT 4 cut(s) 129, 181, 201, 261
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 257, 305, 318
MboI GATC 3 cut(s) 255, 303, 316
MboII GAAGA 3 cut(s) 55, 125, 189
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 4 cut(s) 95, 158, 205, 265
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 316
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 3 cut(s) 25, 81, 286
NdeII GATC 3 cut(s) 255, 303, 316
NlaIII CATG 1 cut(s) 270
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 312, 345
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 77, 80, 83, 106
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
SacII CCGCGG 1 cut(s) 108
SatI GCNGC 4 cut(s) 76, 79, 82, 105
Sau3AI GATC 3 cut(s) 255, 303, 316
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 1 cut(s) 291
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SphI GCATGC 1 cut(s) 270
Sse9I AATT 1 cut(s) 135
SsiI CCGC 7 cut(s) 76, 79, 102, 105, 107, 151, 215
TaiI ACGT 4 cut(s) 132, 184, 204, 264
TaqI TCGA 3 cut(s) 285, 306, 348
TasI AATT 1 cut(s) 135
TauI GCSGC 3 cut(s) 78, 81, 107
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 42
XceI RCATGY 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 56
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.