MD07G1220700.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011852
Physical Location & Seq
Reverse (-)
29829638 .. 29830003
366 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1220700.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCCAAAGATGGGAAGCTAACAAAGCTCAAGTCAGTGCTGAAGAAGTGGAACTCCTTTAGCAAGCAGAACAGCCGCCACAGCCTCAACTCTGTGGTCTCTGCCGCAGATGAAGATTACTCCACCGACGGAATAATTTCAGGAGATCTCCGCCCCGTCTATGTGGGCAAGTCTAGAAGATGTTACCTTGTGGCCTCCGACGTTGTAAACCACCCGCTTCTCAAGGAGATGGCCAACAGGTCAGACCACAACACGATCAACATCGCATGCAAGGTGGTGCTGTTTGAGCACTTGTTGTGGATGCTCGAGAATGTCGATCCACAGCCCAAGTCAATGGACGAGTTAGTCGAGTTCTATGCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

122

Amino Acids

13.7

Weight (kDa)

7.73

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 102 3.4e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AciI CCGC 4 cut(s) 76, 105, 151, 215
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 3, 231
AcuI CTGAAG 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 12
AluBI AGCT 2 cut(s) 19, 28
AluI AGCT 2 cut(s) 19, 28
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 1 cut(s) 311
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 3 cut(s) 3, 192, 231
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 305
BalI TGGCCA 2 cut(s) 5, 233
Bbv12I GWGCWC 1 cut(s) 291
BccI CCATC 2 cut(s) 5, 223
BcgI CGANNNNNNTGC 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 145
BisI GCNGC 2 cut(s) 76, 105
BlsI GCNGC 2 cut(s) 77, 106
BmeT110I CYCGRG 1 cut(s) 305
BmsI GCATC 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 14, 206
BsaBI GATNNNNATC 1 cut(s) 260
BsaI GGTCTC 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 260
BseGI GGATG 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 260
BseLI CCNNNNNNNGG 1 cut(s) 12
BshFI GGCC 3 cut(s) 5, 194, 233
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 3 cut(s) 5, 194, 233
Bso31I GGTCTC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 145, 255, 316
BspACI CCGC 4 cut(s) 76, 105, 151, 215
BspANI GGCC 3 cut(s) 5, 194, 233
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 103
BssMI GATC 3 cut(s) 145, 255, 316
BstC8I GCNNGC 3 cut(s) 65, 268, 361
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 3 cut(s) 148, 258, 319
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 145, 255, 316
BstMWI GCNNNNNNNGC 3 cut(s) 25, 81, 286
BstNSI RCATGY 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 3 cut(s) 5, 194, 233
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 65, 268, 361
CviAII CATG 1 cut(s) 267
CviJI RGCY 8 cut(s) 5, 19, 28, 75, 84, 194, 233, 325
CviKI_1 RGCY 8 cut(s) 5, 19, 28, 75, 84, 194, 233, 325
DpnI GATC 3 cut(s) 147, 257, 318
DpnII GATC 3 cut(s) 145, 255, 316
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 3, 231
EciI GGCGGA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 305
FaeI CATG 1 cut(s) 270
FaiI YATR 3 cut(s) 162, 268, 357
FatI CATG 1 cut(s) 266
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 76, 105
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 2 cut(s) 76, 105
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 76, 105
HaeIII GGCC 3 cut(s) 5, 194, 233
Hin1II CATG 1 cut(s) 270
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 199, 244
Hpy188III TCNNGA 3 cut(s) 141, 174, 307
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 2 cut(s) 131, 203
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 81, 286
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 3 cut(s) 145, 255, 316
LpnPI CCDG 2 cut(s) 126, 223
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 174
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 182
MalI GATC 3 cut(s) 147, 257, 318
MboI GATC 3 cut(s) 145, 255, 316
MboII GAAGA 3 cut(s) 55, 125, 189
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 2 cut(s) 5, 233
MluCI AATT 1 cut(s) 135
MluNI TGGCCA 2 cut(s) 5, 233
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 2 cut(s) 95, 205
Mox20I TGGCCA 2 cut(s) 5, 233
MroXI GAANNNNTTC 1 cut(s) 136
MscI TGGCCA 2 cut(s) 5, 233
Msp20I TGGCCA 2 cut(s) 5, 233
MwoI GCNNNNNNNGC 3 cut(s) 25, 81, 286
NdeII GATC 3 cut(s) 145, 255, 316
NlaIII CATG 1 cut(s) 270
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 305
PcsI WCGNNNNNNNCGW 2 cut(s) 312, 345
PdmI GAANNNNTTC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 77, 106
PsuI RGATCY 1 cut(s) 145
SatI GCNGC 2 cut(s) 76, 105
Sau3AI GATC 3 cut(s) 145, 255, 316
SduI GDGCHC 1 cut(s) 291
SetI ASST 6 cut(s) 21, 30, 189, 204, 242, 276
SfaNI GCATC 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 3 cut(s) 29, 221, 305
SmoI CTYRAG 3 cut(s) 29, 221, 305
SphI GCATGC 1 cut(s) 270
Sse9I AATT 1 cut(s) 135
SsiI CCGC 4 cut(s) 76, 105, 151, 215
SspMI CTAG 1 cut(s) 174
TaiI ACGT 1 cut(s) 204
TaqI TCGA 3 cut(s) 306, 315, 348
TasI AATT 1 cut(s) 135
TauI GCSGC 2 cut(s) 78, 107
TscAI CASTG 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 1 cut(s) 42
XbaI TCTAGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.