Prupe.7G192600_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011852
Physical Location & Seq
Forward (+)
18371150 .. 18371953
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G192600.1

Sequence Viewer

Length: 378 bp
ATGGCCAAAGGTGGGAAGCTAACAAAGCTCAAGTCAGTCCTCAAGAAGTGGAACTCATTCAGCAAGCAGAACAGCCGCCCAAGCCTCAACTCCGTAGTCTCCCCCGATGACGACTTCTCCTCATCCCCCGCCGTTATCTCAGCCGACCTCCGCCCGGTCTACGTGGGCAAGTCTCGACGACGCTACCTCGTAAACTCCGACGTCGTAGACCACCCGCTTTTCAAGGAGCTGGCAGACAGGTCCGGGGACTCAGACGACCACACAATCAATGTCGCATGCGAGGTGGTGCTGTTCGAGCACTTGCTTTGGATGCTCGAGAATGCCGATCCTCAGCCCGAGTCAATGGACGAGTTGGTCGAGTTCTATGCCTGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

126

Amino Acids

14.03

Weight (kDa)

5.3

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
AatII GACGTC 1 cut(s) 204
AccI GTMKAC 2 cut(s) 159, 207
AciI CCGC 4 cut(s) 76, 129, 151, 215
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 12, 154
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 19, 28, 229
AluI AGCT 3 cut(s) 19, 28, 229
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 103, 177
AlwI GGATC 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 314, 335
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 372
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 2 cut(s) 155, 244
AvaI CYCGRG 2 cut(s) 314, 335
AvaII GGWCC 1 cut(s) 240
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 359
BceAI ACGGC 1 cut(s) 116
BcgI CGANNNNNNTGC 1 cut(s) 347
BcnI CCSGG 2 cut(s) 155, 244
BcoDI GTCTC 2 cut(s) 103, 177
BisI GCNGC 2 cut(s) 76, 373
BlsI GCNGC 2 cut(s) 77, 374
Bme1390I CCNGG 2 cut(s) 155, 244
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 2 cut(s) 314, 335
BmgT120I GGNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 155, 244
BmsI GCATC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 14, 26
BpuMI CCSGG 2 cut(s) 155, 244
BsaAI YACGTR 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 154
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 122, 315
BseLI CCNNNNNNNGG 2 cut(s) 12, 154
BseMII CTCAG 3 cut(s) 153, 264, 344
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 359
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 314, 335
BsiSI CCGG 2 cut(s) 155, 243
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 2 cut(s) 12, 154
BsmAI GTCTC 2 cut(s) 103, 177
BsmFI GGGAC 1 cut(s) 260
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 2 cut(s) 314, 335
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 4 cut(s) 76, 129, 151, 215
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 152, 263, 343
BspPI GGATC 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 325
BssNI GRCGYC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 65, 231, 277, 370
BstDEI CTNAG 3 cut(s) 139, 250, 330
BstF5I GGATG 2 cut(s) 122, 315
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 103, 177
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 25, 81, 295, 310
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 153, 242
BstV1I GCAGC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 122, 315
Cac8I GCNNGC 4 cut(s) 65, 231, 277, 370
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 189
CviAII CATG 1 cut(s) 276
CviJI RGCY 8 cut(s) 5, 19, 28, 75, 84, 143, 229, 334
CviKI_1 RGCY 8 cut(s) 5, 19, 28, 75, 84, 143, 229, 334
DdeI CTNAG 3 cut(s) 139, 250, 330
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 240
Eco88I CYCGRG 2 cut(s) 314, 335
FaeI CATG 1 cut(s) 279
FaiI YATR 2 cut(s) 277, 366
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 275
FauI CCCGC 2 cut(s) 136, 222
FblI GTMKAC 2 cut(s) 159, 207
Fnu4HI GCNGC 2 cut(s) 76, 373
FokI GGATG 2 cut(s) 109, 322
Fsp4HI GCNGC 2 cut(s) 76, 373
GluI GCNGC 2 cut(s) 76, 373
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 155, 243
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 279
HinfI GANTC 2 cut(s) 248, 338
HpaII CCGG 2 cut(s) 155, 243
Hpy166II GTNNAC 3 cut(s) 160, 193, 208
Hpy188I TCNGA 2 cut(s) 199, 253
Hpy188III TCNNGA 3 cut(s) 43, 174, 316
Hpy8I GTNNAC 3 cut(s) 160, 193, 208
Hpy99I CGWCG 4 cut(s) 180, 183, 203, 206
HpyCH4IV ACGT 2 cut(s) 162, 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 81, 295, 310
HpyF3I CTNAG 3 cut(s) 139, 250, 330
HpySE526I ACGT 2 cut(s) 162, 201
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 168, 215, 223, 256
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 1 cut(s) 300
MaeII ACGT 2 cut(s) 162, 201
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 242, 347
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 7 cut(s) 50, 95, 130, 158, 197, 274, 339
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 155, 243
MspR9I CCNGG 2 cut(s) 155, 244
Mva1269I GAATGC 1 cut(s) 325
MwoI GCNNNNNNNGC 4 cut(s) 25, 81, 295, 310
NciI CCSGG 2 cut(s) 155, 244
NdeII GATC 1 cut(s) 325
NlaIII CATG 1 cut(s) 279
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 314
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 321, 354
PctI GAATGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 77, 374
PleI GAGTC 2 cut(s) 242, 346
PpsI GAGTC 2 cut(s) 242, 346
Ppu21I YACGTR 1 cut(s) 163
PspPI GGNCC 1 cut(s) 240
SatI GCNGC 2 cut(s) 76, 373
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 2 cut(s) 242, 347
ScrFI CCNGG 2 cut(s) 155, 244
SduI GDGCHC 1 cut(s) 300
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 3 cut(s) 29, 41, 314
SmoI CTYRAG 3 cut(s) 29, 41, 314
SphI GCATGC 1 cut(s) 279
SsiI CCGC 4 cut(s) 76, 129, 151, 215
StyD4I CCNGG 2 cut(s) 153, 242
TaiI ACGT 2 cut(s) 165, 204
TaqI TCGA 4 cut(s) 175, 294, 315, 357
TauI GCSGC 1 cut(s) 78
TseI GCWGC 1 cut(s) 372
TspGWI ACGGA 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 314
XmiI GTMKAC 2 cut(s) 159, 207
XmnI GAANNNNTTC 1 cut(s) 56
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.