Rorug02G0053400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011852
Physical Location & Seq
Forward (+)
4093887 .. 4098209
4323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0053400.1

Sequence Viewer

Length: 1014 bp
ATGGAAGACCAGGGCCAGTTTAAAGCCATTGAGGATAAGGGGCAGCGTCTTGTATTTACTGACCATGCACGTAAACGCCTCTACTCTTTGGACCTTGTTCAGTTCCTCAACCAGAATCTTGCACTTTTGAGGAATAATAATGTTGATGGTTTGGATTTAGTAGCAAAACCCACTGAGCTCGACTTTGTTCGTCGCAATATTGGAAGTGGTTGGGTTCCCGTTGTCCTTTCCTGCAATAGCTTCTTGATGTGCAGGTCAGATTCTGGGTTCCATTTGATAAACCCTGTTACCAAGGAATGGAAGAAAGTACCAAAGACACCAGTAACAAAGAAGCCTTTTTCTTGGGAGCTATATGGGTTTGGATTTGATGACTCCACTAATCAATACAAGGTGGTTGAAGGGAAGGGCTGCACCAATGGATTTGTGTTTAGTGTCTATGCTTCTTTGACTGATTCTTGGCGAAAGATTGACTGCCTATATCCCTACAAACAGACTCGTGTTTGTAGGAAGGATGGGATCGTGCTGAATGGGGGTGTTCATTGGTTGGTCAAGCGAGATGAATCCTTGGTGATTATATCTTTCCTTTTAGCAGAGGAGGAGGTTAAAGAAATCCAAGTACCACCTAATTGCAGCGCCGGTGTAGTAGAACTGGGCATCTTCAGAGATCGGCTATGTATAACATCATTCTCATTTTCAGTAAGTGAAACATATAATGAGTTTTGGGTCATGAAGGAATATGGAGTGAGGGGCTCTTGGACTAAAATGGAGATTGGCATCCCATATCACCGGTTACTGCATTCTGGTTTTTGGACAGAAACTTATGATTTGATGCTGGTTGATGCAACAATGGTAGCTATGTGCAATTTTAATGATAAAAGTTTTTGGATTTTATCGATTCGTCATGGATTTGGCGAAGTTGGTGGTTTTGGAAGCATGAGTGTCTATGTGGAGAGCCGCAAGCCTCTTATTGATCAAGAACAACAGGAGAAAAGTAAAGATGATGGACATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

337

Amino Acids

38.6

Weight (kDa)

6.41

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 74 - 288 6.8e-21 F-box associated beta propeller domain
FBA_3 PF08268 78 - 264 8.1e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 297
AciI CCGC 1 cut(s) 955
AclWI GGATC 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 643
AfaI GTAC 2 cut(s) 309, 618
AfiI CCNNNNNNNGG 1 cut(s) 297
AgeI ACCGGT 1 cut(s) 786
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 178, 240, 349, 854
AluI AGCT 4 cut(s) 178, 240, 349, 854
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 1 cut(s) 524
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 43, 408, 630
AsiGI ACCGGT 1 cut(s) 786
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 2 cut(s) 13, 91
AsuHPI GGTGA 2 cut(s) 580, 776
AvaII GGWCC 1 cut(s) 91
BanII GRGCYC 2 cut(s) 180, 752
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 55, 395, 642
BccI CCATC 3 cut(s) 140, 506, 995
BciT130I CCWGG 1 cut(s) 11
BclI TGATCA 1 cut(s) 970
BfoI RGCGCY 1 cut(s) 636
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 4 cut(s) 44, 409, 631, 955
BlsI GCNGC 4 cut(s) 45, 410, 632, 956
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 13, 91
BmiI GGNNCC 2 cut(s) 216, 269
BmrFI CCNGG 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 4 cut(s) 663, 783, 819, 829
BmuI ACTGGG 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 71
BsaBI GATNNNNATC 2 cut(s) 773, 1005
BsaJI CCNNGG 3 cut(s) 10, 291, 564
BsaWI WCCGGW 1 cut(s) 786
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse118I RCCGGY 2 cut(s) 635, 786
Bse1I ACTGG 3 cut(s) 16, 320, 654
Bse8I GATNNNNATC 2 cut(s) 773, 1005
BseBI CCWGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 893
BseDI CCNNGG 3 cut(s) 10, 291, 564
BseGI GGATG 3 cut(s) 517, 774, 1006
BseJI GATNNNNATC 2 cut(s) 773, 1005
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 3 cut(s) 16, 320, 654
BseRI GAGGAG 2 cut(s) 608, 611
BseXI GCAGC 3 cut(s) 55, 395, 642
BsgI GTGCAG 2 cut(s) 271, 394
BshFI GGCC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 786
BshVI ATCGAT 1 cut(s) 893
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 636, 787
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 180, 752
Bsp143I GATC 3 cut(s) 516, 664, 970
BspACI CCGC 1 cut(s) 955
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 893
BspHI TCATGA 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 216, 269
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 524
BsrFI RCCGGY 2 cut(s) 635, 786
BsrI ACTGG 3 cut(s) 16, 320, 654
BssAI RCCGGY 2 cut(s) 635, 786
BssECI CCNNGG 3 cut(s) 10, 291, 564
BssMI GATC 3 cut(s) 516, 664, 970
BssSI CACGAG 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 291, 564
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 959
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 517, 774, 1006
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 519, 667, 973
BstMBI GATC 3 cut(s) 516, 664, 970
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 55, 395, 642
BstV2I GAAGAC 1 cut(s) 12
Bsu15I ATCGAT 1 cut(s) 893
BsuRI GGCC 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 893
BtsCI GGATG 3 cut(s) 517, 774, 1006
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 959
CaiI CAGNNNCTG 1 cut(s) 263
CciI TCATGA 1 cut(s) 726
CfoI GCGC 1 cut(s) 635
Cfr10I RCCGGY 2 cut(s) 635, 786
Cfr13I GGNCC 2 cut(s) 13, 91
ClaI ATCGAT 1 cut(s) 893
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 308, 617
CspAI ACCGGT 1 cut(s) 786
CviAII CATG 4 cut(s) 65, 727, 902, 934
CviQI GTAC 2 cut(s) 308, 617
DdeI CTNAG 1 cut(s) 174
DpnI GATC 3 cut(s) 518, 666, 972
DpnII GATC 3 cut(s) 516, 664, 970
DraI TTTAAA 1 cut(s) 22
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 291, 564
Eco24I GRGCYC 2 cut(s) 180, 752
Eco47I GGWCC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 2 cut(s) 291, 564
EcoT38I GRGCYC 2 cut(s) 180, 752
ErhI CCWWGG 2 cut(s) 291, 564
FaeI CATG 4 cut(s) 68, 730, 905, 937
FatI CATG 4 cut(s) 64, 726, 901, 933
FbaI TGATCA 1 cut(s) 970
Fnu4HI GCNGC 4 cut(s) 44, 409, 631, 955
FokI GGATG 3 cut(s) 524, 761, 993
FriOI GRGCYC 2 cut(s) 180, 752
Fsp4HI GCNGC 4 cut(s) 44, 409, 631, 955
GlaI GCGC 1 cut(s) 634
GluI GCNGC 4 cut(s) 44, 409, 631, 955
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 1 cut(s) 15
HapII CCGG 2 cut(s) 636, 787
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 635
Hin1II CATG 4 cut(s) 68, 730, 905, 937
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 7 cut(s) 115, 260, 371, 452, 493, 560, 895
HpaII CCGG 2 cut(s) 636, 787
HphI GGTGA 2 cut(s) 580, 776
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 259, 662
Hpy188III TCNNGA 3 cut(s) 244, 727, 974
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 392, 397, 502, 724
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 9 cut(s) 68, 122, 234, 252, 411, 630, 796, 842, 861
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 4 cut(s) 68, 730, 905, 937
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 3 cut(s) 516, 664, 970
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 3 cut(s) 55, 395, 642
LweI GCATC 4 cut(s) 663, 783, 819, 829
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 3 cut(s) 286, 322, 789
MalI GATC 3 cut(s) 518, 666, 972
MboI GATC 3 cut(s) 516, 664, 970
MboII GAAGA 3 cut(s) 17, 313, 649
MhlI GDGCHC 2 cut(s) 180, 752
MluCI AATT 2 cut(s) 625, 862
MlyI GAGTC 2 cut(s) 365, 487
MnlI CCTC 9 cut(s) 25, 89, 116, 123, 586, 589, 592, 738, 972
MseI TTAA 3 cut(s) 21, 603, 867
MspI CCGG 2 cut(s) 636, 787
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 1 cut(s) 11
NdeII GATC 3 cut(s) 516, 664, 970
NlaIII CATG 4 cut(s) 68, 730, 905, 937
NlaIV GGNNCC 2 cut(s) 216, 269
PagI TCATGA 1 cut(s) 726
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 5 cut(s) 115, 260, 452, 560, 895
PflMI CCANNNNNTGG 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 786
PkrI GCNGC 4 cut(s) 45, 410, 632, 956
PleI GAGTC 2 cut(s) 365, 487
PpsI GAGTC 2 cut(s) 365, 487
Ppu21I YACGTR 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 216, 269
PspPI GGNCC 2 cut(s) 13, 91
PstNI CAGNNNCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 309, 618
RsaNI GTAC 2 cut(s) 308, 617
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 3 cut(s) 21, 603, 867
SatI GCNGC 4 cut(s) 44, 409, 631, 955
Sau3AI GATC 3 cut(s) 516, 664, 970
Sau96I GGNCC 2 cut(s) 13, 91
SchI GAGTC 2 cut(s) 365, 487
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 180, 752
SfaNI GCATC 4 cut(s) 663, 783, 819, 829
SgrAI CRCCGGYG 1 cut(s) 635
SinI GGWCC 1 cut(s) 91
Sse9I AATT 2 cut(s) 625, 862
SsiI CCGC 1 cut(s) 955
SspI AATATT 1 cut(s) 199
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 2 cut(s) 291, 564
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 180, 893
TasI AATT 2 cut(s) 625, 862
TauI GCSGC 1 cut(s) 957
TfiI GAWTC 5 cut(s) 115, 260, 452, 560, 895
Tru1I TTAA 3 cut(s) 21, 603, 867
Tru9I TTAA 3 cut(s) 21, 603, 867
TscAI CASTG 1 cut(s) 178
TseI GCWGC 3 cut(s) 43, 408, 630
TspDTI ATGAA 3 cut(s) 527, 573, 743
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.