Rroxscaffold_2G00146010

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011852
Physical Location & Seq
Forward (+)
83848287 .. 83848658
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00146010.1

Sequence Viewer

Length: 372 bp
ATGGCGAAAGGTGGAAAGCTACTGAAGCTCAAGTCAGTCCTCAAGAAGTGGAACTCATTCAGCAAAAGCAACCGCCACAGCATCAACTCTGTAGCCTCTGCCGACGACGACAGCTACTCTTTCTCCAACGACGTCGTCTCCTCCAGCGACCTCCAAGCCGTCTACGTCGGTAAGTCCCGAAGACGCTACCTCGTGGGCCCCGACGTCGTCCACCACCCCCTTTTCAAAGAACTGGCGGAAAGATCCTCAGACGACGACACAATCAATGTCGCATGTGAGGTGGTGCTGTTCGAGCACCTGCTCTGGATGCTCGAAAACGCCGATCCTCAGCCGGAATCGATGGACGAGCTCGTCGAGTTTTACGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

123

Amino Acids

13.85

Weight (kDa)

5.28

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 104 1.8e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 306
AasI GACNNNNNNGTC 1 cut(s) 350
AatII GACGTC 2 cut(s) 135, 207
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 162
AciI CCGC 2 cut(s) 73, 236
AclWI GGATC 2 cut(s) 237, 317
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 132, 204
AgsI TTSAA 1 cut(s) 226
AluBI AGCT 4 cut(s) 19, 28, 114, 349
AluI AGCT 4 cut(s) 19, 28, 114, 349
Alw21I GWGCWC 2 cut(s) 297, 351
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 2 cut(s) 237, 317
AoxI GGCC 1 cut(s) 196
ApaI GGGCCC 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 196, 197
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 200, 351
BauI CACGAG 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 2 cut(s) 297, 351
BbvCI CCTCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 142
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 196, 197
BmiI GGNNCC 2 cut(s) 198, 199
BmsI GCATC 2 cut(s) 90, 297
BpiI GAAGAC 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 327
BpuEI CTTGAG 2 cut(s) 14, 26
Bsa29I ATCGAT 1 cut(s) 338
BsaHI GRCGYC 2 cut(s) 132, 204
BsaXI ACNNNNNCTCC 4 cut(s) 107, 122, 137, 152
Bse1I ACTGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 338
BseGI GGATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 261, 341
BseNI ACTGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 200
BshFI GGCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 338
BsiHKAI GWGCWC 2 cut(s) 297, 351
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 198
Bsp120I GGGCCC 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 200, 297, 351
Bsp143I GATC 2 cut(s) 242, 322
BspACI CCGC 2 cut(s) 73, 236
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 260, 340
BspDI ATCGAT 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 198, 199
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 2 cut(s) 237, 317
BsrI ACTGG 1 cut(s) 237
BssMI GATC 2 cut(s) 242, 322
BssNI GRCGYC 2 cut(s) 132, 204
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
BstACI GRCGYC 2 cut(s) 132, 204
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 2 cut(s) 247, 327
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 2 cut(s) 245, 325
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 242, 322
BstMWI GCNNNNNNNGC 3 cut(s) 25, 292, 307
BstNSI RCATGY 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 338
BsuRI GGCC 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 338
BtsCI GGATG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 196, 197
ClaI ATCGAT 1 cut(s) 338
CseI GACGC 1 cut(s) 192
CviAII CATG 1 cut(s) 273
CviJI RGCY 8 cut(s) 19, 28, 95, 114, 158, 198, 331, 349
CviKI_1 RGCY 8 cut(s) 19, 28, 95, 114, 158, 198, 331, 349
DdeI CTNAG 2 cut(s) 247, 327
DpnI GATC 2 cut(s) 244, 324
DpnII GATC 2 cut(s) 242, 322
DrdI GACNNNNNNGTC 1 cut(s) 350
DseDI GACNNNNNNGTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 2 cut(s) 200, 351
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 200, 351
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 1 cut(s) 276
FaiI YATR 1 cut(s) 274
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 272
FblI GTMKAC 1 cut(s) 162
FokI GGATG 1 cut(s) 319
FriOI GRGCYC 2 cut(s) 200, 351
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 2 cut(s) 132, 204
Hin1II CATG 1 cut(s) 276
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 163, 211
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 43, 177, 304
Hpy8I GTNNAC 2 cut(s) 163, 211
Hpy99I CGWCG 9 cut(s) 107, 110, 134, 137, 170, 206, 209, 257, 356
HpyCH4IV ACGT 3 cut(s) 132, 165, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 292, 307
HpyF3I CTNAG 2 cut(s) 247, 327
HpySE526I ACGT 3 cut(s) 132, 165, 204
Hsp92I GRCGYC 2 cut(s) 132, 204
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 242, 322
LpnPI CCDG 5 cut(s) 157, 218, 289, 311, 345
LweI GCATC 2 cut(s) 90, 297
MaeII ACGT 3 cut(s) 132, 165, 204
MalI GATC 2 cut(s) 244, 324
MboI GATC 2 cut(s) 242, 322
MboII GAAGA 1 cut(s) 192
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 200, 297, 351
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 50, 106, 151, 161, 200, 256, 271, 336
MroXI GAANNNNTTC 1 cut(s) 56
MspI CCGG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 25, 292, 307
NdeII GATC 2 cut(s) 242, 322
NlaIII CATG 1 cut(s) 276
NlaIV GGNNCC 2 cut(s) 198, 199
NspI RCATGY 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 306
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 318, 351
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 335
PflFI GACNNNGTC 2 cut(s) 134, 206
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 198, 199
PspOMI GGGCCC 1 cut(s) 196
PspPI GGNCC 2 cut(s) 196, 197
PsuI RGATCY 1 cut(s) 242
PsyI GACNNNGTC 2 cut(s) 134, 206
SacI GAGCTC 1 cut(s) 351
Sau3AI GATC 2 cut(s) 242, 322
Sau96I GGNCC 2 cut(s) 196, 197
SduI GDGCHC 3 cut(s) 200, 297, 351
SfaNI GCATC 2 cut(s) 90, 297
SfcI CTRYAG 1 cut(s) 90
SmlI CTYRAG 2 cut(s) 29, 41
SmoI CTYRAG 2 cut(s) 29, 41
SsiI CCGC 2 cut(s) 73, 236
SstI GAGCTC 1 cut(s) 351
TaiI ACGT 3 cut(s) 135, 168, 207
TaqI TCGA 4 cut(s) 291, 312, 338, 354
TfiI GAWTC 1 cut(s) 335
Tth111I GACNNNGTC 2 cut(s) 134, 206
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 56
ZraI GACGTC 2 cut(s) 133, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.