pycom02g07820

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011852
Physical Location & Seq
Reverse (-)
5501289 .. 5501654
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07820.1

Sequence Viewer

Length: 366 bp
ATGGCCAAAGGTGGGAAGCTAACAAAGCTCAAGTCAGTGCTGAAGAAGTGGAACTCCTTCAGCAAGCAGAACAGCCGCCGCAGCCTCAACTCCGTGGTCTCCGCCGCCGATGACGATTACTCCACCGACGTAATAATTTCAGGAGACCTCCACCCCGTCTATGTGGGCAAGTCCAGAAGACGTTACCTTGTGGCCTCCGACGTCTTAGACCACCCGATTTTCAAGGAGCTGGCCGACAGGTCAGACGACGACACGATCAACGTCGCATGCGAGGTGGTGCTGTTCGAGCACTTGTTGTGGATGCTCGAGAATGCCGATCCACAGCCCGAGTCAATGGACGAGTTAGTCGAGTTCTATGCCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

5.1

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 102 2.8e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AatII GACGTC 1 cut(s) 204
AciI CCGC 4 cut(s) 76, 79, 102, 105
AclWI GGATC 1 cut(s) 311
AcoI YGGCCR 2 cut(s) 3, 231
AcuI CTGAAG 2 cut(s) 43, 62
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 19, 28, 229
AluI AGCT 3 cut(s) 19, 28, 229
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 103, 138
AlwI GGATC 1 cut(s) 311
Ama87I CYCGRG 2 cut(s) 305, 326
AoxI GGCC 3 cut(s) 3, 192, 231
ApeKI GCWGC 1 cut(s) 81
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
Asp700I GAANNNNTTC 1 cut(s) 56
AvaI CYCGRG 2 cut(s) 305, 326
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 93
BcgI CGANNNNNNTGC 1 cut(s) 338
BcoDI GTCTC 2 cut(s) 103, 138
BisI GCNGC 4 cut(s) 76, 79, 82, 105
BlsI GCNGC 4 cut(s) 77, 80, 83, 106
BmeT110I CYCGRG 2 cut(s) 305, 326
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 201
BsaI GGTCTC 2 cut(s) 103, 138
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 3 cut(s) 5, 194, 233
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 2 cut(s) 305, 326
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 2 cut(s) 103, 138
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 3 cut(s) 5, 194, 233
Bso31I GGTCTC 2 cut(s) 103, 138
BsoBI CYCGRG 2 cut(s) 305, 326
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 255, 316
BspACI CCGC 4 cut(s) 76, 79, 102, 105
BspANI GGCC 3 cut(s) 5, 194, 233
BspPI GGATC 1 cut(s) 311
BspTNI GGTCTC 2 cut(s) 103, 138
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 255, 316
BssNI GRCGYC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 4 cut(s) 65, 231, 268, 361
BstDEI CTNAG 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 2 cut(s) 258, 319
BstMAI GTCTC 2 cut(s) 103, 138
BstMBI GATC 2 cut(s) 255, 316
BstMWI GCNNNNNNNGC 3 cut(s) 25, 81, 286
BstNSI RCATGY 1 cut(s) 270
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 184
BsuRI GGCC 3 cut(s) 5, 194, 233
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 4 cut(s) 65, 231, 268, 361
CviAII CATG 1 cut(s) 267
CviJI RGCY 9 cut(s) 5, 19, 28, 75, 84, 194, 229, 233, 325
CviKI_1 RGCY 9 cut(s) 5, 19, 28, 75, 84, 194, 229, 233, 325
DdeI CTNAG 1 cut(s) 205
DpnI GATC 2 cut(s) 257, 318
DpnII GATC 2 cut(s) 255, 316
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 3, 231
EciI GGCGGA 1 cut(s) 91
Eco31I GGTCTC 2 cut(s) 103, 138
Eco57I CTGAAG 2 cut(s) 43, 62
Eco88I CYCGRG 2 cut(s) 305, 326
FaeI CATG 1 cut(s) 270
FaiI YATR 3 cut(s) 162, 268, 357
FatI CATG 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 76, 79, 82, 105
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 4 cut(s) 76, 79, 82, 105
GluI GCNGC 4 cut(s) 76, 79, 82, 105
HaeIII GGCC 3 cut(s) 5, 194, 233
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 270
HinfI GANTC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 199, 244
Hpy188III TCNNGA 3 cut(s) 141, 174, 307
Hpy99I CGWCG 4 cut(s) 131, 203, 251, 266
HpyAV CCTTC 1 cut(s) 67
HpyCH4IV ACGT 4 cut(s) 129, 181, 201, 261
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 81, 286
HpyF3I CTNAG 1 cut(s) 205
HpySE526I ACGT 4 cut(s) 129, 181, 201, 261
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 1 cut(s) 270
Kzo9I GATC 2 cut(s) 255, 316
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 4 cut(s) 126, 187, 215, 223
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 291
MaeII ACGT 4 cut(s) 129, 181, 201, 261
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 257, 318
MboI GATC 2 cut(s) 255, 316
MboII GAAGA 2 cut(s) 55, 189
MhlI GDGCHC 1 cut(s) 291
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 135
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 4 cut(s) 95, 158, 205, 265
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
Mva1269I GAATGC 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 25, 81, 286
NdeII GATC 2 cut(s) 255, 316
NlaIII CATG 1 cut(s) 270
NspI RCATGY 1 cut(s) 270
PaeI GCATGC 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 305
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 312, 345
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 56
PkrI GCNGC 4 cut(s) 77, 80, 83, 106
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
SatI GCNGC 4 cut(s) 76, 79, 82, 105
Sau3AI GATC 2 cut(s) 255, 316
SchI GAGTC 1 cut(s) 338
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 305
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 29, 305
SmoI CTYRAG 2 cut(s) 29, 305
SphI GCATGC 1 cut(s) 270
Sse9I AATT 1 cut(s) 135
SsiI CCGC 4 cut(s) 76, 79, 102, 105
TaiI ACGT 4 cut(s) 132, 184, 204, 264
TaqI TCGA 3 cut(s) 285, 306, 348
TasI AATT 1 cut(s) 135
TauI GCSGC 3 cut(s) 78, 81, 107
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 42
XceI RCATGY 1 cut(s) 270
XhoI CTCGAG 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 56
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.