FvH4_1g09300

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011852
Physical Location & Seq
Reverse (-)
4980380 .. 4980754
375 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09300.t1

Sequence Viewer

Length: 375 bp
ATGGCGAAAGGTGGAAAGCTACTGAAGCTCAAGTCAGTCCTCAAGAAGTGGAACTCATTCAGCAAAAGCAACCGCCACAGCATCTGCTCCATAGCCTCCGCCGACGACGACGTCAGCTACTCATCCTCCAACGACGTCGTCTCCTCTGGAGACCTTCAGGCCGTCTACGTCGGCAAGTCTAGAAGACGCTACCTCGTCGGCCCCGACGTCGTCCACCACCCCCTTTTCAAGGAGCTGGCAGAGAGATCCGACGACGACGACTCAATCAATGTCGCATGCGAGGTGGTGTTGTTCGAGCACCTGCTCTGGATGCTCGAGAACGCCGATCCTCAGCCGGAATCGATGAACGAGCTCGTCGAGTTCTACGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

125

Amino Acids

13.88

Weight (kDa)

5.27

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 105 4.3e-18 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20820
fragaria_vesca FvH4_1g09300
malus_domestica MD02G1100200.v1.1 MD07G1220700.v1.1 MD15G1223100.v1.1
prunus_persica Prupe.7G192600_v2.0.a1
pyrus_communis pycom02g07820 pycom15g19720
rosa_chinensis RchiOBHm_Chr2g0095881
rosa_laevigata RLG00000016601
rosa_multiflora Rmu_sc0024045.1_g000001 Rmu_sc0034047.1_g000001
rosa_roxburghii Rroxscaffold_2G00146010
rosa_rugosa Rorug02G0053400
rosa_samantha Rh2AG102500 Rh2BG104000 Rh2CG106500 Rh2DG104200
rosa_wichuraiana Rw2G007800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 309
AasI GACNNNNNNGTC 1 cut(s) 110
AatII GACGTC 3 cut(s) 114, 138, 210
Acc36I ACCTGC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 165
AciI CCGC 2 cut(s) 73, 99
AclWI GGATC 2 cut(s) 240, 320
AcuI CTGAAG 2 cut(s) 44, 140
AcyI GRCGYC 3 cut(s) 111, 135, 207
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 5 cut(s) 19, 28, 117, 235, 352
AluI AGCT 5 cut(s) 19, 28, 117, 235, 352
Alw21I GWGCWC 2 cut(s) 300, 354
Alw26I GTCTC 2 cut(s) 144, 145
AlwI GGATC 2 cut(s) 240, 320
AlwNI CAGNNNCTG 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 159, 199
Asp700I GAANNNNTTC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 314
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 190
Bbv12I GWGCWC 2 cut(s) 300, 354
BbvCI CCTCAGC 1 cut(s) 330
BceAI ACGGC 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 144, 145
BfaI CTAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 2 cut(s) 90, 300
BpiI GAAGAC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 14, 26
Bsa29I ATCGAT 1 cut(s) 341
BsaHI GRCGYC 3 cut(s) 111, 135, 207
BsaI GGTCTC 1 cut(s) 144
BsaXI ACNNNNNCTCC 4 cut(s) 110, 125, 140, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 341
BseGI GGATG 2 cut(s) 122, 315
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 133
BshFI GGCC 2 cut(s) 161, 201
BshVI ATCGAT 1 cut(s) 341
BsiHKAI GWGCWC 2 cut(s) 300, 354
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 144, 145
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 2 cut(s) 161, 201
Bso31I GGTCTC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 300, 354
Bsp143I GATC 2 cut(s) 245, 325
BspACI CCGC 2 cut(s) 73, 99
BspANI GGCC 2 cut(s) 161, 201
BspCNI CTCAG 1 cut(s) 343
BspDI ATCGAT 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 2 cut(s) 240, 320
BspTNI GGTCTC 1 cut(s) 144
BssMI GATC 2 cut(s) 245, 325
BssNI GRCGYC 3 cut(s) 111, 135, 207
BstACI GRCGYC 3 cut(s) 111, 135, 207
BstC8I GCNNGC 3 cut(s) 237, 277, 370
BstDEI CTNAG 1 cut(s) 330
BstENI CCTNNNNNAGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 122, 315
BstKTI GATC 2 cut(s) 248, 328
BstMAI GTCTC 2 cut(s) 144, 145
BstMBI GATC 2 cut(s) 245, 325
BstMWI GCNNNNNNNGC 2 cut(s) 25, 310
BstNSI RCATGY 1 cut(s) 279
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 2 cut(s) 161, 201
BsuTUI ATCGAT 1 cut(s) 341
BtsCI GGATG 2 cut(s) 122, 315
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 237, 277, 370
CaiI CAGNNNCTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 200
ClaI ATCGAT 1 cut(s) 341
CseI GACGC 1 cut(s) 195
CviAII CATG 1 cut(s) 276
CviJI RGCY 9 cut(s) 19, 28, 95, 117, 161, 201, 235, 334, 352
CviKI_1 RGCY 9 cut(s) 19, 28, 95, 117, 161, 201, 235, 334, 352
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 247, 327
DpnII GATC 2 cut(s) 245, 325
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 144
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 2 cut(s) 44, 140
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 352
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 1 cut(s) 279
FaiI YATR 2 cut(s) 92, 277
FatI CATG 1 cut(s) 275
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 109, 322
FriOI GRGCYC 1 cut(s) 354
FspBI CTAG 1 cut(s) 180
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 2 cut(s) 161, 201
HapII CCGG 1 cut(s) 335
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 3 cut(s) 111, 135, 207
Hin1II CATG 1 cut(s) 279
HinfI GANTC 2 cut(s) 260, 338
HpaII CCGG 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 166, 214
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 5 cut(s) 43, 147, 180, 307, 316
Hpy8I GTNNAC 2 cut(s) 166, 214
HpyAV CCTTC 1 cut(s) 164
HpyCH4IV ACGT 4 cut(s) 111, 135, 168, 207
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 310
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 4 cut(s) 111, 135, 168, 207
Hsp92I GRCGYC 3 cut(s) 111, 135, 207
Hsp92II CATG 1 cut(s) 279
Kzo9I GATC 2 cut(s) 245, 325
LmnI GCTCC 2 cut(s) 92, 232
LpnPI CCDG 6 cut(s) 132, 143, 221, 292, 314, 348
LweI GCATC 2 cut(s) 90, 300
MaeI CTAG 1 cut(s) 180
MaeII ACGT 4 cut(s) 111, 135, 168, 207
MalI GATC 2 cut(s) 247, 327
MboI GATC 2 cut(s) 245, 325
MboII GAAGA 1 cut(s) 195
MflI RGATCY 1 cut(s) 245
MhlI GDGCHC 2 cut(s) 300, 354
MlyI GAGTC 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 153, 273
MnlI CCTC 7 cut(s) 50, 106, 136, 154, 203, 274, 339
MroXI GAANNNNTTC 1 cut(s) 56
MspI CCGG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 25, 310
NdeII GATC 2 cut(s) 245, 325
NlaIII CATG 1 cut(s) 279
NlaIV GGNNCC 1 cut(s) 202
NspI RCATGY 1 cut(s) 279
PaeI GCATGC 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 314
PaqCI CACCTGC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 204, 321, 354
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 338
PflFI GACNNNGTC 3 cut(s) 110, 137, 209
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
Psp124BI GAGCTC 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 245
PsyI GACNNNGTC 3 cut(s) 110, 137, 209
SacI GAGCTC 1 cut(s) 354
Sau3AI GATC 2 cut(s) 245, 325
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 300, 354
SfaNI GCATC 2 cut(s) 90, 300
Sfr274I CTCGAG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 3 cut(s) 29, 41, 314
SmoI CTYRAG 3 cut(s) 29, 41, 314
SphI GCATGC 1 cut(s) 279
SsiI CCGC 2 cut(s) 73, 99
SspMI CTAG 1 cut(s) 180
SstI GAGCTC 1 cut(s) 354
TaiI ACGT 4 cut(s) 114, 138, 171, 210
TaqI TCGA 4 cut(s) 294, 315, 341, 357
TfiI GAWTC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 359
Tth111I GACNNNGTC 3 cut(s) 110, 137, 209
XagI CCTNNNNNAGG 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 179
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 180
ZraI GACGTC 3 cut(s) 112, 136, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.