AT5G21050

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015440
Physical Location & Seq
Forward (+)
7147890 .. 7148957
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21050.1

Sequence Viewer

Length: 1068 bp
ATGTCTGATTCTTCCTCAAGCCATGACTCACCACCTTCTCCGGCGATCACCGGAGATTCAGAAACCACAGTGACCAACAACGAATCAGAATCCAACACAAAATGTCAAACAGCAATCCAATCCTTATCCACGATCGTCACAAACACAAACATCCCTTCCACAATAACCATCCTCCTCGACGATGAAGCCGTCTCCACCGCGATCTCCTCTCTCCTCCTACGTCCCGATTCAGGCGCCGGAGATAACAACCTCTGCCGTTGGCTCTACGACACATTCCAATCCGCGGAACCATCGCTTCAGCTTCTCGTCCTCCGATTCGTTCCTTTAATCGCTGGTCTCTACCTCTCTCGTGTCCCTCTCCGTCAACCACAAGCCGGATTCGAAGCCGTTTTACTCGCTCTCTACGCGCACGAAACAACCTCACGTGCCGGTCAAGCAATAACCGTCAACATTCCAGATCTCTCATATCCAAGCATTTACCATGAATCCAAAGGTCTCACAAGGAACAACAACTCAACGTGCCTCAACATCGCTGTGATCTCCTCCACGTTAGATCCACACGGGACGGTTAGATCCACGCGCCGCGCGAGGATCGTCGGAGTCGCGTTGGAGCTTTACTATAGCAAAATCTCGAAAATGCCACGCGAATCTAAGCTTAATTTCTGTGAATCGTGTGAGAAATGGGCGGGGCAAAACGGAGAAACGGAGCAATCTTCACGGGCTGTGATTCCGACTTTGAGCGATGATTCGTGGAGAGAGGAAGAGAATGTTGCTATTGGAGGAAGATCTGAGAGAGATAGTGGAAGGATTCCATTGCCATGGGAGCTTCTCCAACCGATTTTGAGGATCTTAGGGCATTGTCTCCTTGGGCTCAAAATGGAAGATAGGGAGTTATCTGAGGCGGCGAATAAAGCTTGTCAGAGTTTGTATCTCCGATCTCTGCATGATATAAATCCGAAGGCGATTTTGGCTACCGGAAGTCTTCTTCGGCTCCGTGAGATGGCTCTTGATCCCAAGAATCAAATCGATCACACTGAGCTATCAAACGACACCGTTCTCTCCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hyccin

Protein Analysis

355

Amino Acids

38.9

Weight (kDa)

5.27

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hyccin PF09790 58 - 330 7.8e-48 Hyccin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21050
fragaria_vesca FvH4_5g28070
malus_domestica MD11G1179900.v1.1
prunus_persica Prupe.6G113000_v2.0.a1 Prupe.6G152400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220241
rosa_laevigata RLG00000002247
rosa_multiflora Rmu_co8248515.1_g000001 Rmu_sc0001136.1_g000021
rosa_roxburghii Rroxscaffold_3G00239690
rosa_rugosa Rorug07G0191400
rosa_samantha Rh7AG333500 Rh7BG323700 Rh7CG351100 Rh7DG329800
rosa_wichuraiana Rw7G028130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccII CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
AciI CCGC 6 cut(s) 198, 282, 284, 583, 686, 902
AclWI GGATC 5 cut(s) 548, 567, 599, 854, 1004
AcuI CTGAAG 1 cut(s) 281
AcvI CACGTG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 4 cut(s) 230, 283, 374, 1000
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 6 cut(s) 301, 613, 655, 826, 914, 1039
AluI AGCT 6 cut(s) 301, 613, 655, 826, 914, 1039
Alw26I GTCTC 4 cut(s) 196, 341, 500, 866
AlwI GGATC 5 cut(s) 548, 567, 599, 854, 1004
AspLEI GCGC 4 cut(s) 236, 409, 582, 587
AsuHPI GGTGA 2 cut(s) 21, 40
AsuII TTCGAA 1 cut(s) 381
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 873
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
BauI CACGAG 1 cut(s) 348
BbrPI CACGTG 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 974
BccI CCATC 3 cut(s) 176, 298, 994
BceAI ACGGC 3 cut(s) 173, 240, 371
BcoDI GTCTC 4 cut(s) 196, 341, 500, 866
BfmI CTRYAG 1 cut(s) 619
BfoI RGCGCY 1 cut(s) 237
BglII AGATCT 2 cut(s) 457, 785
BisI GCNGC 2 cut(s) 583, 903
BlsI GCNGC 2 cut(s) 584, 904
BmiI GGNNCC 3 cut(s) 235, 288, 992
BpiI GAAGAC 1 cut(s) 974
Bpu14I TTCGAA 1 cut(s) 381
Bsa29I ATCGAT 1 cut(s) 1026
BsaAI YACGTR 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 951
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 2 cut(s) 341, 500
BsaJI CCNNGG 3 cut(s) 282, 818, 865
BsaWI WCCGGW 2 cut(s) 50, 974
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 283, 374, 1000
Bse118I RCCGGY 1 cut(s) 428
Bse3DI GCAATG 1 cut(s) 812
Bse8I GATNNNNATC 1 cut(s) 951
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 3 cut(s) 282, 818, 865
BseGI GGATG 2 cut(s) 150, 168
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 4 cut(s) 230, 283, 374, 1000
BseMI GCAATG 1 cut(s) 812
BseMII CTCAG 3 cut(s) 780, 888, 1026
BseRI GAGGAG 4 cut(s) 164, 196, 203, 532
Bsh1236I CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
Bsh1285I CGRYCG 1 cut(s) 135
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 1026
BsiEI CGRYCG 1 cut(s) 135
BsiSI CCGG 6 cut(s) 41, 51, 237, 375, 429, 975
BslFI GGGAC 3 cut(s) 207, 338, 577
BslI CCNNNNNNNGG 4 cut(s) 230, 283, 374, 1000
BsmAI GTCTC 4 cut(s) 196, 341, 500, 866
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 3 cut(s) 207, 338, 577
Bso31I GGTCTC 2 cut(s) 341, 500
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 873
Bsp19I CCATGG 1 cut(s) 818
BspACI CCGC 6 cut(s) 198, 282, 284, 583, 686, 902
BspCNI CTCAG 3 cut(s) 781, 889, 1027
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
BspLI GGNNCC 3 cut(s) 235, 288, 992
BspPI GGATC 5 cut(s) 548, 567, 599, 854, 1004
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 2 cut(s) 341, 500
BsrDI GCAATG 1 cut(s) 812
BsrFI RCCGGY 1 cut(s) 428
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 282, 818, 865
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 2 cut(s) 818, 865
Bst2BI CACGAG 1 cut(s) 348
Bst4CI ACNGT 4 cut(s) 70, 445, 568, 1054
Bst6I CTCTTC 1 cut(s) 756
BstACI GRCGYC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 381
BstDEI CTNAG 5 cut(s) 651, 789, 850, 897, 1035
BstDSI CCRYGG 2 cut(s) 282, 818
BstF5I GGATG 2 cut(s) 150, 168
BstFNI CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 4 cut(s) 236, 409, 582, 587
BstMAI GTCTC 4 cut(s) 196, 341, 500, 866
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 5 cut(s) 404, 434, 823, 911, 968
BstSFI CTRYAG 1 cut(s) 619
BstUI CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 5 cut(s) 457, 553, 572, 785, 846
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 5 cut(s) 457, 553, 572, 785, 846
Bsu15I ATCGAT 1 cut(s) 1026
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 2 cut(s) 282, 818
BtgZI GCGATG 3 cut(s) 276, 514, 756
BtsCI GGATG 2 cut(s) 150, 168
BtsIMutI CAGTG 2 cut(s) 75, 1032
CfoI GCGC 4 cut(s) 236, 409, 582, 587
Cfr10I RCCGGY 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 285
ClaI ATCGAT 1 cut(s) 1026
CviAII CATG 4 cut(s) 23, 482, 819, 944
DdeI CTNAG 5 cut(s) 651, 789, 850, 897, 1035
DinI GGCGCC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 756
EarI CTCTTC 1 cut(s) 756
Eco130I CCWWGG 2 cut(s) 818, 865
Eco24I GRGCYC 1 cut(s) 873
Eco31I GGTCTC 2 cut(s) 341, 500
Eco57I CTGAAG 1 cut(s) 281
Eco72I CACGTG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 818, 865
EcoT38I GRGCYC 1 cut(s) 873
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 818, 865
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 4 cut(s) 26, 485, 822, 947
FaiI YATR 7 cut(s) 24, 466, 483, 621, 820, 945, 950
FaqI GGGAC 3 cut(s) 207, 338, 577
FatI CATG 4 cut(s) 22, 481, 818, 943
FauI CCCGC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 583, 903
FokI GGATG 2 cut(s) 137, 155
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 2 cut(s) 583, 903
GlaI GCGC 4 cut(s) 235, 408, 581, 586
GluI GCNGC 2 cut(s) 583, 903
HaeII RGCGCY 1 cut(s) 237
HapII CCGG 6 cut(s) 41, 51, 237, 375, 429, 975
HhaI GCGC 4 cut(s) 236, 409, 582, 587
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 26, 485, 822, 947
Hin6I GCGC 4 cut(s) 234, 407, 580, 585
HinP1I GCGC 4 cut(s) 234, 407, 580, 585
HincII GTYRAC 2 cut(s) 365, 448
HindII GTYRAC 2 cut(s) 365, 448
HindIII AAGCTT 2 cut(s) 653, 912
HpaII CCGG 6 cut(s) 41, 51, 237, 375, 429, 975
HphI GGTGA 2 cut(s) 21, 40
Hpy166II GTNNAC 2 cut(s) 365, 448
Hpy188III TCNNGA 4 cut(s) 224, 455, 631, 1007
Hpy8I GTNNAC 2 cut(s) 365, 448
Hpy99I CGWCG 2 cut(s) 182, 599
HpyAV CCTTC 4 cut(s) 45, 165, 798, 952
HpyCH4III ACNGT 4 cut(s) 70, 445, 568, 1054
HpyCH4IV ACGT 4 cut(s) 220, 424, 518, 548
HpyCH4V TGCA 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 434, 823, 911, 968
HpyF3I CTNAG 5 cut(s) 651, 789, 850, 897, 1035
HpySE526I ACGT 4 cut(s) 220, 424, 518, 548
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 26, 485, 822, 947
HspAI GCGC 4 cut(s) 234, 407, 580, 585
KasI GGCGCC 1 cut(s) 233
KspI CCGCGG 1 cut(s) 285
LmnI GCTCC 4 cut(s) 610, 706, 823, 996
LpnPI CCDG 9 cut(s) 54, 64, 216, 250, 318, 388, 442, 468, 988
MaeII ACGT 4 cut(s) 220, 424, 518, 548
MaeIII GTNAC 2 cut(s) 70, 136
MboII GAAGA 7 cut(s) 3, 705, 773, 795, 893, 974, 977
MflI RGATCY 5 cut(s) 457, 553, 572, 785, 846
MhlI GDGCHC 1 cut(s) 873
MluCI AATT 1 cut(s) 658
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 20, 609
MmeI TCCRAC 5 cut(s) 117, 577, 588, 755, 856
MseI TTAA 2 cut(s) 326, 657
MslI CAYNNNNRTG 2 cut(s) 533, 817
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 6 cut(s) 41, 51, 237, 375, 429, 975
MteI GCGCNGCGC 1 cut(s) 583
MvnI CGCG 8 cut(s) 200, 284, 407, 580, 585, 587, 605, 645
MwoI GCNNNNNNNGC 5 cut(s) 404, 434, 823, 911, 968
NarI GGCGCC 1 cut(s) 234
NcoI CCATGG 1 cut(s) 818
NlaIII CATG 4 cut(s) 26, 485, 822, 947
NlaIV GGNNCC 3 cut(s) 235, 288, 992
NmuCI GTSAC 2 cut(s) 70, 136
NspV TTCGAA 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 584
PkrI GCNGC 2 cut(s) 584, 904
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 2 cut(s) 20, 608
PluTI GGCGCC 1 cut(s) 237
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
PpsI GAGTC 2 cut(s) 20, 608
Ppu21I YACGTR 1 cut(s) 425
PspCI CACGTG 1 cut(s) 425
PspN4I GGNNCC 3 cut(s) 235, 288, 992
PsuI RGATCY 5 cut(s) 457, 553, 572, 785, 846
PvuI CGATCG 1 cut(s) 135
RseI CAYNNNNRTG 2 cut(s) 533, 817
SacII CCGCGG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 326, 657
SatI GCNGC 2 cut(s) 583, 903
SchI GAGTC 2 cut(s) 20, 609
SduI GDGCHC 1 cut(s) 873
SfcI CTRYAG 1 cut(s) 619
SfoI GGCGCC 1 cut(s) 235
Sfr303I CCGCGG 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 381
SgrBI CCGCGG 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 533, 817
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 658
SsiI CCGC 6 cut(s) 198, 282, 284, 583, 686, 902
SspDI GGCGCC 1 cut(s) 233
StyI CCWWGG 2 cut(s) 818, 865
TaaI ACNGT 4 cut(s) 70, 445, 568, 1054
TaiI ACGT 4 cut(s) 223, 427, 521, 551
TaqI TCGA 4 cut(s) 177, 381, 632, 1026
TasI AATT 1 cut(s) 658
TauI GCSGC 2 cut(s) 585, 905
Tru1I TTAA 2 cut(s) 326, 657
Tru9I TTAA 2 cut(s) 326, 657
TscAI CASTG 2 cut(s) 75, 1039
TseFI GTSAC 2 cut(s) 70, 136
Tsp45I GTSAC 2 cut(s) 70, 136
TspDTI ATGAA 2 cut(s) 198, 498
TspGWI ACGGA 5 cut(s) 350, 711, 719, 983, 1051
TspRI CASTG 2 cut(s) 75, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.