Rorug07G0191400

Hyccin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015440
Physical Location & Seq
Reverse (-)
16286110 .. 16287438
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0191400.1

Sequence Viewer

Length: 900 bp
ATGGTTGTGGGTAGTACTGACACATCCGCCACCACAATTGAGTTTGCAATGGCTGAAATTATGAACAAACCAGTGGTGTTACAGAAAGCCCAGAAAGAATTAGACGTTGTAGTTGGGAAAGACAGTATTGTACAAGAGTCTCATATTCACAAACTACCATACTTGGATGCTGTGATGAAAGAAACTCTGCGCTTGCACCCAGCCTTGCCTGTATTAATTCCACATTGTCCAAGTGAAACATGCACTGTGGGAGGTTATACCATTCCAAAGGGGTCTAGGATTTTTGTTAATGTGTGGGATATCCATAGAGACTCTTCTAACTGGAAAAACCCATTAGAGTTTAATCCAGAGAGGTTCTTGAATGGTAAGTATGACTACACTGGAAGTGACTTCAACTATTTTCCATTTGGGAGTGGAAAAAGAATATGTCCAGGGATAGCAACGGCAGAGAGGCTTGTCATGCATTTACTTGCATCACTGTTGCATTCTTTTGACTGGAAACTACCACAAGGACAGACGAAGTTAGATGTTTCCGAGAAGTTTGGCCTTGTGATGAAGAAGAAGCTACGAAATTTGGCCAAAATTAAAGTTAAATCTCCTTCTCAGTCCATCCCTCACTCTTATCTTTCTCTCTCCGTCGAGAAATCTCAAACCATTACCAGCTCCTCCGCCAAAATCAAGTCACTCTCTGTCTCCGAGATCACACCCCCTCAGCTCTCCAACCTCTCAATTGTCAAATCCGCCTCCACCTTCTCCTTCGCCTCCGCCTTCGCTAGTGAGCCATCGGAGGCGGAGCTCCATAAGTTCGGTGTCTCCGACGATATCAGAGCCTTTGTCAAGGGACTCACTTCCGAATTTTTTGATTCGGTTCTTCAAATGCGCACCGTTTCGATCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hyccin

Protein Analysis

299

Amino Acids

33.12

Weight (kDa)

8.8

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 189 1e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21050
fragaria_vesca FvH4_5g28070
malus_domestica MD11G1179900.v1.1
prunus_persica Prupe.6G113000_v2.0.a1 Prupe.6G152400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220241
rosa_laevigata RLG00000002247
rosa_multiflora Rmu_co8248515.1_g000001 Rmu_sc0001136.1_g000021
rosa_roxburghii Rroxscaffold_3G00239690
rosa_rugosa Rorug07G0191400
rosa_samantha Rh7AG333500 Rh7BG323700 Rh7CG351100 Rh7DG329800
rosa_wichuraiana Rw7G028130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 881
AciI CCGC 5 cut(s) 27, 669, 741, 765, 791
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 2 cut(s) 571, 854
AfaI GTAC 2 cut(s) 16, 132
AgsI TTSAA 3 cut(s) 361, 394, 875
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 4 cut(s) 565, 663, 715, 796
AluI AGCT 4 cut(s) 565, 663, 715, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 4 cut(s) 144, 303, 697, 817
AoxI GGCC 2 cut(s) 544, 576
ApoI RAATTY 2 cut(s) 571, 854
AseI ATTAAT 1 cut(s) 215
AspLEI GCGC 2 cut(s) 192, 882
BalI TGGCCA 1 cut(s) 578
BanII GRGCYC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 798
BbvCI CCTCAGC 1 cut(s) 711
BccI CCATC 2 cut(s) 617, 790
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 432
BcoDI GTCTC 4 cut(s) 144, 303, 697, 817
BfaI CTAG 2 cut(s) 276, 774
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 2 cut(s) 157, 482
Bpu10I CCTNAGC 1 cut(s) 711
BsaJI CCNNGG 1 cut(s) 431
Bse1I ACTGG 4 cut(s) 71, 326, 385, 500
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 3 cut(s) 23, 172, 609
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 617, 725
BseNI ACTGG 4 cut(s) 71, 326, 385, 500
BseRI GAGGAG 1 cut(s) 655
BseYI CCCAGC 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 894
BshFI GGCC 2 cut(s) 546, 578
BsiEI CGRYCG 1 cut(s) 894
BsiHKAI GWGCWC 1 cut(s) 798
BslFI GGGAC 1 cut(s) 855
BsmAI GTCTC 4 cut(s) 144, 303, 697, 817
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 484
BsnI GGCC 2 cut(s) 546, 578
Bsp1286I GDGCHC 1 cut(s) 798
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 2 cut(s) 699, 891
BspACI CCGC 5 cut(s) 27, 669, 741, 765, 791
BspANI GGCC 2 cut(s) 546, 578
BspCNI CTCAG 2 cut(s) 616, 724
BsrDI GCAATG 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 4 cut(s) 71, 326, 385, 500
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 2 cut(s) 699, 891
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 4 cut(s) 125, 247, 480, 886
Bst6I CTCTTC 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 603, 711
BstF5I GGATG 3 cut(s) 23, 172, 609
BstHHI GCGC 2 cut(s) 192, 882
BstKTI GATC 2 cut(s) 702, 894
BstMAI GTCTC 4 cut(s) 144, 303, 697, 817
BstMBI GATC 2 cut(s) 699, 891
BstMCI CGRYCG 1 cut(s) 894
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 430
BsuRI GGCC 2 cut(s) 546, 578
BtsCI GGATG 3 cut(s) 23, 172, 609
BtsIMutI CAGTG 4 cut(s) 78, 243, 378, 476
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 2 cut(s) 192, 882
Csp6I GTAC 2 cut(s) 15, 131
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 2 cut(s) 240, 460
CviQI GTAC 2 cut(s) 15, 131
DdeI CTNAG 2 cut(s) 603, 711
DpnI GATC 2 cut(s) 701, 893
DpnII GATC 2 cut(s) 699, 891
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 319
EciI GGCGGA 5 cut(s) 16, 658, 730, 754, 806
Ecl136II GAGCTC 1 cut(s) 796
Eco24I GRGCYC 1 cut(s) 798
Eco32I GATATC 2 cut(s) 301, 823
Eco53kI GAGCTC 1 cut(s) 796
EcoICRI GAGCTC 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 430
EcoRV GATATC 2 cut(s) 301, 823
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 798
FaeI CATG 2 cut(s) 243, 463
FaqI GGGAC 1 cut(s) 855
FatI CATG 2 cut(s) 239, 459
FokI GGATG 3 cut(s) 10, 179, 596
FriOI GRGCYC 1 cut(s) 798
FspAI RTGCGCAY 1 cut(s) 881
FspBI CTAG 2 cut(s) 276, 774
FspI TGCGCA 1 cut(s) 881
GlaI GCGC 2 cut(s) 191, 881
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 2 cut(s) 546, 578
HhaI GCGC 2 cut(s) 192, 882
Hin1II CATG 2 cut(s) 243, 463
Hin6I GCGC 2 cut(s) 190, 880
HinP1I GCGC 2 cut(s) 190, 880
HinfI GANTC 4 cut(s) 137, 311, 843, 863
Hpy188I TCNGA 6 cut(s) 535, 697, 787, 817, 827, 853
Hpy188III TCNNGA 3 cut(s) 347, 358, 640
Hpy99I CGWCG 2 cut(s) 641, 821
HpyAV CCTTC 4 cut(s) 609, 760, 766, 778
HpyCH4III ACNGT 4 cut(s) 125, 247, 480, 886
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 6 cut(s) 47, 196, 243, 463, 473, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 2 cut(s) 603, 711
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 243, 463
HspAI GCGC 2 cut(s) 190, 880
Kzo9I GATC 2 cut(s) 699, 891
LmnI GCTCC 3 cut(s) 668, 793, 801
LweI GCATC 2 cut(s) 157, 482
MaeI CTAG 2 cut(s) 276, 774
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 3 cut(s) 78, 386, 681
MalI GATC 2 cut(s) 701, 893
MboI GATC 2 cut(s) 699, 891
MboII GAAGA 4 cut(s) 306, 568, 571, 863
MfeI CAATTG 2 cut(s) 36, 729
MhlI GDGCHC 1 cut(s) 798
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 8 cut(s) 36, 57, 98, 216, 571, 582, 729, 854
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 3 cut(s) 146, 305, 837
MmeI TCCRAC 2 cut(s) 744, 840
Mox20I TGGCCA 1 cut(s) 578
Mph1103I ATGCAT 1 cut(s) 465
MscI TGGCCA 1 cut(s) 578
MseI TTAA 5 cut(s) 215, 288, 342, 585, 591
Msp20I TGGCCA 1 cut(s) 578
MspR9I CCNGG 1 cut(s) 432
MunI CAATTG 2 cut(s) 36, 729
Mva1269I GAATGC 1 cut(s) 484
MvaI CCWGG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 460
NdeII GATC 2 cut(s) 699, 891
NlaIII CATG 2 cut(s) 243, 463
NmuCI GTSAC 2 cut(s) 386, 681
NsbI TGCGCA 1 cut(s) 881
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 813
PctI GAATGC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 863
Ple19I CGATCG 1 cut(s) 894
PleI GAGTC 3 cut(s) 145, 305, 837
PpsI GAGTC 3 cut(s) 145, 305, 837
PshBI ATTAAT 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 430
PvuI CGATCG 1 cut(s) 894
RsaI GTAC 2 cut(s) 16, 132
RsaNI GTAC 2 cut(s) 15, 131
SacI GAGCTC 1 cut(s) 798
SaqAI TTAA 5 cut(s) 215, 288, 342, 585, 591
Sau3AI GATC 2 cut(s) 699, 891
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 3 cut(s) 146, 305, 837
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 798
SetI ASST 9 cut(s) 108, 256, 356, 567, 665, 717, 726, 752, 798
SfaNI GCATC 2 cut(s) 157, 482
Sse9I AATT 8 cut(s) 36, 57, 98, 216, 571, 582, 729, 854
SsiI CCGC 5 cut(s) 27, 669, 741, 765, 791
SspMI CTAG 2 cut(s) 276, 774
SstI GAGCTC 1 cut(s) 798
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 4 cut(s) 125, 247, 480, 886
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 639, 890, 894
TasI AATT 8 cut(s) 36, 57, 98, 216, 571, 582, 729, 854
TatI WGTACW 2 cut(s) 14, 130
TfiI GAWTC 1 cut(s) 863
Tru1I TTAA 5 cut(s) 215, 288, 342, 585, 591
Tru9I TTAA 5 cut(s) 215, 288, 342, 585, 591
TscAI CASTG 4 cut(s) 78, 250, 385, 483
TseFI GTSAC 2 cut(s) 386, 681
Tsp45I GTSAC 2 cut(s) 386, 681
TspDTI ATGAA 3 cut(s) 77, 191, 569
TspGWI ACGGA 1 cut(s) 625
TspRI CASTG 4 cut(s) 78, 250, 385, 483
VspI ATTAAT 1 cut(s) 215
XapI RAATTY 2 cut(s) 571, 854
XceI RCATGY 1 cut(s) 243
XspI CTAG 2 cut(s) 276, 774
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.