Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015440

Physical Location & Seq

Genomic Coordinates Reverse (-)

8150610 .. 8151685

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G113000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCCAATGACCCCTCCACTTCCTCCACCCTAGAAGATGATCAAGACACCATCAATTCCACCACCATCACACCATCCTCAACAACTACCACTTCAGTCTCAGCCTCAGCTTCATCACATAACTCATCCCTCTCCAAATCCCAATCAGCAATCCAATCCCTCTCAACCATTCTCCCCTCTCTCCCTCCTTCCCTCTTCTCCTCCTCCAACCCTGCCCGCTCCCTCCTCCATGACCACCACACAGCCTCCCACATCTCCTCCCTTCTCCGCCAACCCGACTCCGGTGCAGGCGACAACAACCTCTGCCGCTGGCTCTACGACACCTTCCAATCCTCCGATCCCGACCTCCAACTCCTCGTCCTTCGCTTCCTTCCCCTCATCGCGGGCATCTACATCTCCCGTGTGGCACTCCGTGTACCCCTAGCCGGCTTTGAGGCCGTCCTCTTAGCCCTCTACGCCCACGAAACCGCAACACGTTCTGGCCACTCCATAACCGTCAGTGTCCCGACCTCACCCGCTAAAAACAACTCCACAGACCTAAATTTGGCTGTCATATCTCCAAGTTTGGAACCCTACGGTACAGTGAGGTCCACAAGGAGGGCTAGGATTGTTGGGGTTGCACTAGAGTTGTACTACAGCAAGATACATGAAATGCCAGTGCTGTCGAAGATCGAATTTTGCCAGTTTTGTAAGCTTTCGGCTGGCCAAGACGGTGAAATGTACAAGGAGATGACTGGTAGTAGCTGTAGCAATAGGAATGAATGCAAAGAAGAGGATGGGAATGGAGAAAAGGAGGGGAGGGTTCCTCTGCCATGGGAATTGATGCAACCGGTTTTGAGGATATTGGGTCACTGCCTTTTGTGTCCAAACCAAAACAAGGAGTTGGTTGATAAGGGCAGTGAGGCTTGTAGGAGTTTGTATGCCAGGTCTATGCATGATATCAATCCCAACGCTATTTTGGCCACTGGGAGTCTTCTTAGGCTAACCAAGCAAACATTGGACTCCAAGGATGATTTTGATCCAACTGAGATTCCTAAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hyccin

Protein Analysis

348

Amino Acids

37.72

Weight (kDa)

5.81

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21050
fragaria_vesca	FvH4_5g28070
malus_domestica	MD11G1179900.v1.1
prunus_persica	Prupe.6G113000_v2.0.a1 Prupe.6G152400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220241
rosa_laevigata	RLG00000002247
rosa_multiflora	Rmu_co8248515.1_g000001 Rmu_sc0001136.1_g000021
rosa_roxburghii	Rroxscaffold_3G00239690
rosa_rugosa	Rorug07G0191400
rosa_samantha	Rh7AG333500 Rh7BG323700 Rh7CG351100 Rh7DG329800
rosa_wichuraiana	Rw7G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	1 cut(s)	383
AciI	CCGC	6 cut(s)	217, 268, 307, 383, 468, 516
AclWI	GGATC	2 cut(s)	332, 1013
AcoI	YGGCCR	3 cut(s)	481, 703, 960
AcsI	RAATTY	2 cut(s)	541, 674
AcuI	CTGAAG	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	4 cut(s)	417, 580, 632, 722
AfiI	CCNNNNNNNGG	6 cut(s)	281, 382, 425, 544, 597, 877
AflIII	ACRYGT	1 cut(s)	473
AgeI	ACCGGT	1 cut(s)	829
AjnI	CCWGG	1 cut(s)	923
AluBI	AGCT	3 cut(s)	110, 694, 744
AluI	AGCT	3 cut(s)	110, 694, 744
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	332, 1013
AoxI	GGCC	4 cut(s)	435, 481, 703, 960
ApoI	RAATTY	2 cut(s)	541, 674
AsiGI	ACCGGT	1 cut(s)	829
AspS9I	GGNCC	1 cut(s)	588
AsuHPI	GGTGA	2 cut(s)	504, 725
AvaII	GGWCC	1 cut(s)	588
BalI	TGGCCA	3 cut(s)	483, 705, 962
BbsI	GAAGAC	1 cut(s)	965
BbvCI	CCTCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	59, 74, 82, 770
BceAI	ACGGC	1 cut(s)	422
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	1 cut(s)	925
BclI	TGATCA	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	4 cut(s)	32, 422, 603, 623
BfmI	CTRYAG	2 cut(s)	634, 745
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	1 cut(s)	925
Bme18I	GGWCC	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	588
BmiI	GGNNCC	2 cut(s)	570, 804
BmrFI	CCNGG	1 cut(s)	925
BmrI	ACTGGG	1 cut(s)	975
BmsI	GCATC	2 cut(s)	396, 813
BmuI	ACTGGG	1 cut(s)	975
BpiI	GAAGAC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	790, 822
Bpu10I	CCTNAGC	1 cut(s)	106
BsaBI	GATNNNNATC	2 cut(s)	942, 1017
BsaJI	CCNNGG	2 cut(s)	812, 1005
BsaWI	WCCGGW	2 cut(s)	281, 829
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 242, 260, 272
Bsc4I	CCNNNNNNNGG	6 cut(s)	281, 382, 425, 544, 597, 877
Bse118I	RCCGGY	2 cut(s)	425, 829
Bse1I	ACTGG	4 cut(s)	656, 682, 739, 970
Bse8I	GATNNNNATC	2 cut(s)	942, 1017
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	2 cut(s)	812, 1005
BseGI	GGATG	4 cut(s)	74, 125, 781, 1015
BseJI	GATNNNNATC	2 cut(s)	942, 1017
BseLI	CCNNNNNNNGG	6 cut(s)	281, 382, 425, 544, 597, 877
BseMII	CTCAG	3 cut(s)	114, 120, 1017
BseNI	ACTGG	4 cut(s)	656, 682, 739, 970
BseRI	GAGGAG	5 cut(s)	190, 193, 215, 247, 344
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	4 cut(s)	437, 483, 705, 962
BshTI	ACCGGT	1 cut(s)	829
BsiSI	CCGG	3 cut(s)	282, 426, 830
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	6 cut(s)	281, 382, 425, 544, 597, 877
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	767
BsnI	GGCC	4 cut(s)	437, 483, 705, 962
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	4 cut(s)	40, 337, 669, 1018
Bsp19I	CCATGG	1 cut(s)	812
BspACI	CCGC	6 cut(s)	217, 268, 307, 383, 468, 516
BspANI	GGCC	4 cut(s)	437, 483, 705, 962
BspCNI	CTCAG	3 cut(s)	113, 119, 1018
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	570, 804
BspPI	GGATC	2 cut(s)	332, 1013
BsrBI	CCGCTC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	425, 829
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	656, 682, 739, 970
BssAI	RCCGGY	2 cut(s)	425, 829
BssECI	CCNNGG	2 cut(s)	812, 1005
BssMI	GATC	4 cut(s)	40, 337, 669, 1018
BssT1I	CCWWGG	2 cut(s)	812, 1005
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	4 cut(s)	496, 578, 583, 713
Bst6I	CTCTTC	2 cut(s)	200, 765
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	6 cut(s)	217, 289, 311, 385, 427, 703
BstDEI	CTNAG	5 cut(s)	100, 106, 445, 977, 1026
BstDSI	CCRYGG	1 cut(s)	812
BstF5I	GGATG	4 cut(s)	74, 125, 781, 1015
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	4 cut(s)	43, 340, 672, 1021
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	4 cut(s)	40, 337, 669, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 959, 988
BstNI	CCWGG	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	2 cut(s)	634, 745
BstUI	CGCG	1 cut(s)	383
BstV2I	GAAGAC	1 cut(s)	965
BsuRI	GGCC	4 cut(s)	437, 483, 705, 962
BtgI	CCRYGG	1 cut(s)	812
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	4 cut(s)	74, 125, 781, 1015
BtsI	GCAGTG	2 cut(s)	850, 904
BtsIMutI	CAGTG	6 cut(s)	505, 588, 663, 850, 904, 963
Cac8I	GCNNGC	6 cut(s)	217, 289, 311, 385, 427, 703
Cfr10I	RCCGGY	2 cut(s)	425, 829
Cfr13I	GGNCC	1 cut(s)	588
Csp6I	GTAC	4 cut(s)	416, 579, 631, 721
CspAI	ACCGGT	1 cut(s)	829
CviAII	CATG	4 cut(s)	230, 647, 813, 935
CviQI	GTAC	4 cut(s)	416, 579, 631, 721
DdeI	CTNAG	5 cut(s)	100, 106, 445, 977, 1026
DpnI	GATC	4 cut(s)	42, 339, 671, 1020
DpnII	GATC	4 cut(s)	40, 337, 669, 1018
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	3 cut(s)	481, 703, 960
Eam1104I	CTCTTC	2 cut(s)	200, 765
EarI	CTCTTC	2 cut(s)	200, 765
EciI	GGCGGA	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	812, 1005
Eco32I	GATATC	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	588
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	923
EcoRV	GATATC	1 cut(s)	940
EcoT14I	CCWWGG	2 cut(s)	812, 1005
EcoT22I	ATGCAT	1 cut(s)	936
ErhI	CCWWGG	2 cut(s)	812, 1005
FaeI	CATG	4 cut(s)	233, 650, 816, 938
FaiI	YATR	9 cut(s)	120, 231, 491, 554, 648, 814, 921, 932, 936
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	4 cut(s)	229, 646, 812, 934
FauI	CCCGC	3 cut(s)	224, 376, 523
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	4 cut(s)	61, 112, 788, 1022
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	4 cut(s)	32, 422, 603, 623
GluI	GCNGC	1 cut(s)	307
HaeIII	GGCC	4 cut(s)	437, 483, 705, 962
HapII	CCGG	3 cut(s)	282, 426, 830
Hin1II	CATG	4 cut(s)	233, 650, 816, 938
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	278, 970, 1001, 1030
HpaII	CCGG	3 cut(s)	282, 426, 830
HphI	GGTGA	2 cut(s)	504, 725
Hpy166II	GTNNAC	2 cut(s)	416, 591
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	4 cut(s)	44, 341, 505, 1041
Hpy8I	GTNNAC	2 cut(s)	416, 591
HpyAV	CCTTC	5 cut(s)	198, 272, 334, 371, 380
HpyCH4III	ACNGT	4 cut(s)	496, 578, 583, 713
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	5 cut(s)	287, 620, 765, 826, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 959, 988
HpyF3I	CTNAG	5 cut(s)	100, 106, 445, 977, 1026
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	4 cut(s)	233, 650, 816, 938
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	4 cut(s)	40, 337, 669, 1018
LmnI	GCTCC	1 cut(s)	224
LweI	GCATC	2 cut(s)	396, 813
MaeI	CTAG	4 cut(s)	32, 422, 603, 623
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	848
MalI	GATC	4 cut(s)	42, 339, 671, 1020
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	4 cut(s)	40, 337, 669, 1018
MboII	GAAGA	5 cut(s)	47, 187, 679, 782, 965
MlsI	TGGCCA	3 cut(s)	483, 705, 962
MluCI	AATT	4 cut(s)	55, 541, 674, 818
MluNI	TGGCCA	3 cut(s)	483, 705, 962
MlyI	GAGTC	3 cut(s)	272, 979, 995
MmeI	TCCRAC	2 cut(s)	231, 373
Mox20I	TGGCCA	3 cut(s)	483, 705, 962
Mph1103I	ATGCAT	1 cut(s)	936
MroNI	GCCGGC	1 cut(s)	425
MscI	TGGCCA	3 cut(s)	483, 705, 962
Msp20I	TGGCCA	3 cut(s)	483, 705, 962
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	3 cut(s)	282, 426, 830
MspR9I	CCNGG	1 cut(s)	925
Mva1269I	GAATGC	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	3 cut(s)	455, 959, 988
NaeI	GCCGGC	1 cut(s)	427
NcoI	CCATGG	1 cut(s)	812
NdeII	GATC	4 cut(s)	40, 337, 669, 1018
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	4 cut(s)	233, 650, 816, 938
NlaIV	GGNNCC	2 cut(s)	570, 804
NmuCI	GTSAC	1 cut(s)	848
NsiI	ATGCAT	1 cut(s)	936
PctI	GAATGC	1 cut(s)	767
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	1030
PinAI	ACCGGT	1 cut(s)	829
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	3 cut(s)	272, 978, 995
PpsI	GAGTC	3 cut(s)	272, 978, 995
Psp6I	CCWGG	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	2 cut(s)	570, 804
PspPI	GGNCC	1 cut(s)	588
RsaI	GTAC	4 cut(s)	417, 580, 632, 722
RsaNI	GTAC	4 cut(s)	416, 579, 631, 721
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	4 cut(s)	40, 337, 669, 1018
Sau96I	GGNCC	1 cut(s)	588
SchI	GAGTC	3 cut(s)	272, 979, 995
ScrFI	CCNGG	1 cut(s)	925
SfaNI	GCATC	2 cut(s)	396, 813
SfcI	CTRYAG	2 cut(s)	634, 745
SinI	GGWCC	1 cut(s)	588
Sse9I	AATT	4 cut(s)	55, 541, 674, 818
SsiI	CCGC	6 cut(s)	217, 268, 307, 383, 468, 516
SspMI	CTAG	4 cut(s)	32, 422, 603, 623
StyD4I	CCNGG	1 cut(s)	923
StyI	CCWWGG	2 cut(s)	812, 1005
TaaI	ACNGT	4 cut(s)	496, 578, 583, 713
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	665, 672
TasI	AATT	4 cut(s)	55, 541, 674, 818
TatI	WGTACW	2 cut(s)	630, 720
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	1030
TscAI	CASTG	6 cut(s)	505, 588, 663, 857, 904, 970
TseFI	GTSAC	1 cut(s)	848
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	3 cut(s)	102, 663, 774
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	6 cut(s)	505, 588, 663, 857, 904, 970
VpaK11BI	GGWCC	1 cut(s)	588
XapI	RAATTY	2 cut(s)	541, 674
XcmI	CCANNNNNNNNNTGG	2 cut(s)	955, 994
XspI	CTAG	4 cut(s)	32, 422, 603, 623
Zsp2I	ATGCAT	1 cut(s)	936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.