Rmu_co8248515.1_g000001

Hyccin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8248515.1
OG0015440
Physical Location & Seq
Forward (+)
40 .. 785
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8248515.1_g000001.1.cds

Sequence Viewer

Length: 746 bp
atgtctaacgatccctccaccaccacctcatccattgctggagacaccaccacggcaaccacagacgatacgatcagcaccgccaccaccatccccgaagacgccaccagttcgaccgccctaacctccaccaccaaagcctcaacctcattagactcctcctcatcctcaacctcctccaagccccaagcagcagcaatccaatccctctccgccatcctcccctccctctcctccacctcccacaccaccgcccgttccctcctccacgacccccacacatcctcccaaatctcctccctcctcaaacaacccgactccggctccggcgacaacaacctctgccgctggctctacgacaccttccagtcctccgatcccgacctccagctcctcgtcctccgcttcctccccctcgtcgccggcctctacctctcccgcgtccccctccgcatccccctcgccggcttcgaggccgtcctcctggccctctacgcccacgagaccgcctcccgcgacggtcattccgtcaccgtcaacgttcccgacgtgtcccaccccagcctctaccacgaaaccaaggccgccgccgtcaagagcaacgccaccgggctcaacttgaccgttatatcacccagcttggagcctcacggcaccgtcagatccacacggagggctaggatcgtcggggtggcgctggagctgtactacaccaaaatatacgaaatgccagtcgagtccaagat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hyccin

Protein Analysis

248

Amino Acids

26.22

Weight (kDa)

5.86

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015440)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21050
fragaria_vesca FvH4_5g28070
malus_domestica MD11G1179900.v1.1
prunus_persica Prupe.6G113000_v2.0.a1 Prupe.6G152400_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0220241
rosa_laevigata RLG00000002247
rosa_multiflora Rmu_co8248515.1_g000001 Rmu_sc0001136.1_g000021
rosa_roxburghii Rroxscaffold_3G00239690
rosa_rugosa Rorug07G0191400
rosa_samantha Rh7AG333500 Rh7BG323700 Rh7CG351100 Rh7DG329800
rosa_wichuraiana Rw7G028130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 653
AccII CGCG 2 cut(s) 441, 516
AclI AACGTT 1 cut(s) 540
AclWI GGATC 4 cut(s) 5, 371, 657, 689
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 3 cut(s) 320, 464, 672
AflIII ACRYGT 1 cut(s) 549
AjiI CACGTC 1 cut(s) 550
AjnI CCWGG 1 cut(s) 483
AluBI AGCT 3 cut(s) 391, 639, 703
AluI AGCT 3 cut(s) 391, 639, 703
Alw26I GTCTC 2 cut(s) 36, 497
AlwI GGATC 4 cut(s) 5, 371, 657, 689
AoxI GGCC 4 cut(s) 424, 474, 486, 582
ApeKI GCWGC 2 cut(s) 191, 194
ArsI GACNNNNNNTTYG 1 cut(s) 717
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 610
AsuHPI GGTGA 2 cut(s) 523, 624
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 615
BauI CACGAG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 203, 206
BccI CCATC 2 cut(s) 98, 224
BceAI ACGGC 4 cut(s) 69, 461, 575, 667
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 1 cut(s) 485
BcnI CCSGG 1 cut(s) 610
BcoDI GTCTC 2 cut(s) 36, 497
BfaI CTAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 698
BisI GCNGC 5 cut(s) 192, 195, 346, 585, 588
BlsI GCNGC 5 cut(s) 193, 196, 347, 586, 589
Bme1390I CCNGG 2 cut(s) 485, 610
BmgBI CACGTC 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 3 cut(s) 325, 645, 655
BmrFI CCNGG 2 cut(s) 485, 610
BmsI GCATC 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 494, 526
BpmI CTGGAG 3 cut(s) 60, 371, 719
BpuMI CCSGG 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 2 cut(s) 51, 579
BsaXI ACNNNNNCTCC 5 cut(s) 29, 269, 299, 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 464, 672
Bse118I RCCGGY 2 cut(s) 422, 464
Bse1I ACTGG 3 cut(s) 108, 367, 731
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 2 cut(s) 51, 579
BseGI GGATG 6 cut(s) 29, 90, 164, 216, 281, 453
BseLI CCNNNNNNNGG 3 cut(s) 320, 464, 672
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 3 cut(s) 108, 367, 731
BseRI GAGGAG 8 cut(s) 148, 151, 166, 223, 254, 286, 293, 383
BseXI GCAGC 2 cut(s) 203, 206
BseYI CCCAGC 2 cut(s) 560, 635
Bsh1236I CGCG 2 cut(s) 441, 516
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 426, 476, 488, 584
BshNI GGYRCC 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 5 cut(s) 321, 327, 423, 465, 609
BslFI GGGAC 2 cut(s) 428, 538
BslI CCNNNNNNNGG 3 cut(s) 320, 464, 672
BsmAI GTCTC 2 cut(s) 36, 497
BsmFI GGGAC 2 cut(s) 428, 538
BsnI GGCC 4 cut(s) 426, 476, 488, 584
Bso31I GGTCTC 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 5 cut(s) 10, 72, 376, 662, 681
BspANI GGCC 4 cut(s) 426, 476, 488, 584
BspFNI CGCG 2 cut(s) 441, 516
BspLI GGNNCC 3 cut(s) 325, 645, 655
BspPI GGATC 4 cut(s) 5, 371, 657, 689
BspT107I GGYRCC 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 422, 464
BsrI ACTGG 3 cut(s) 108, 367, 731
BssAI RCCGGY 2 cut(s) 422, 464
BssECI CCNNGG 2 cut(s) 51, 579
BssMI GATC 5 cut(s) 10, 72, 376, 662, 681
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 4 cut(s) 521, 535, 625, 658
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 3 cut(s) 350, 424, 466
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 6 cut(s) 29, 90, 164, 216, 281, 453
BstFNI CGCG 2 cut(s) 441, 516
BstH2I RGCGCY 1 cut(s) 698
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 5 cut(s) 13, 75, 379, 665, 684
BstMAI GTCTC 2 cut(s) 36, 497
BstMBI GATC 5 cut(s) 10, 72, 376, 662, 681
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 483, 608
BstUI CGCG 2 cut(s) 441, 516
BstV1I GCAGC 2 cut(s) 203, 206
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 4 cut(s) 426, 476, 488, 584
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 6 cut(s) 29, 90, 164, 216, 281, 453
Cac8I GCNNGC 3 cut(s) 350, 424, 466
CfoI GCGC 1 cut(s) 697
Cfr10I RCCGGY 2 cut(s) 422, 464
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 2 cut(s) 110, 430
Csp6I GTAC 1 cut(s) 706
CviQI GTAC 1 cut(s) 706
DpnI GATC 5 cut(s) 12, 74, 378, 664, 683
DpnII GATC 5 cut(s) 10, 72, 376, 662, 681
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 579
Eco24I GRGCYC 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 579
EcoT38I GRGCYC 1 cut(s) 615
ErhI CCWWGG 1 cut(s) 579
FaiI YATR 2 cut(s) 629, 721
FaqI GGGAC 2 cut(s) 428, 538
FauI CCCGC 2 cut(s) 446, 521
Fnu4HI GCNGC 5 cut(s) 192, 195, 346, 585, 588
FokI GGATG 6 cut(s) 16, 77, 151, 203, 268, 440
FriOI GRGCYC 1 cut(s) 615
Fsp4HI GCNGC 5 cut(s) 192, 195, 346, 585, 588
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 696
GluI GCNGC 5 cut(s) 192, 195, 346, 585, 588
GsaI CCCAGC 2 cut(s) 564, 639
GsuI CTGGAG 3 cut(s) 60, 371, 719
HaeII RGCGCY 1 cut(s) 698
HaeIII GGCC 4 cut(s) 426, 476, 488, 584
HapII CCGG 5 cut(s) 321, 327, 423, 465, 609
HgaI GACGC 2 cut(s) 110, 430
HhaI GCGC 1 cut(s) 697
Hin1I GRCGYC 1 cut(s) 102
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 3 cut(s) 155, 317, 737
HpaII CCGG 5 cut(s) 321, 327, 423, 465, 609
HphI GGTGA 2 cut(s) 523, 624
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 2 cut(s) 376, 662
Hpy188III TCNNGA 3 cut(s) 380, 545, 595
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 4 cut(s) 422, 521, 551, 689
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 4 cut(s) 521, 535, 625, 658
HpyCH4IV ACGT 2 cut(s) 540, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpySE526I ACGT 2 cut(s) 540, 549
Hsp92I GRCGYC 1 cut(s) 102
HspAI GCGC 1 cut(s) 695
KroI GCCGGC 2 cut(s) 422, 464
KroNI GCCGGC 2 cut(s) 424, 466
Kzo9I GATC 5 cut(s) 10, 72, 376, 662, 681
LmnI GCTCC 4 cut(s) 329, 396, 643, 700
Lsp1109I GCAGC 2 cut(s) 203, 206
LweI GCATC 1 cut(s) 462
MaeI CTAG 1 cut(s) 678
MaeII ACGT 2 cut(s) 540, 549
MaeIII GTNAC 1 cut(s) 529
MalI GATC 5 cut(s) 12, 74, 378, 664, 683
MboI GATC 5 cut(s) 10, 72, 376, 662, 681
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 662
MhlI GDGCHC 1 cut(s) 615
MlyI GAGTC 3 cut(s) 149, 311, 746
MroNI GCCGGC 2 cut(s) 422, 464
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 5 cut(s) 321, 327, 423, 465, 609
MspR9I CCNGG 2 cut(s) 485, 610
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 2 cut(s) 441, 516
MwoI GCNNNNNNNGC 1 cut(s) 494
NaeI GCCGGC 2 cut(s) 424, 466
NciI CCSGG 1 cut(s) 610
NdeII GATC 5 cut(s) 10, 72, 376, 662, 681
NgoMIV GCCGGC 2 cut(s) 422, 464
NlaIV GGNNCC 3 cut(s) 325, 645, 655
NmuCI GTSAC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 3 cut(s) 468, 525, 546
PdiI GCCGGC 2 cut(s) 424, 466
PkrI GCNGC 5 cut(s) 193, 196, 347, 586, 589
PleI GAGTC 3 cut(s) 149, 311, 745
PpsI GAGTC 3 cut(s) 149, 311, 745
Psp1406I AACGTT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 2 cut(s) 560, 635
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 325, 645, 655
PspPI GGNCC 1 cut(s) 487
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SatI GCNGC 5 cut(s) 192, 195, 346, 585, 588
Sau3AI GATC 5 cut(s) 10, 72, 376, 662, 681
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 3 cut(s) 149, 311, 746
ScrFI CCNGG 2 cut(s) 485, 610
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 1 cut(s) 462
SspMI CTAG 1 cut(s) 678
StyD4I CCNGG 2 cut(s) 483, 608
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 4 cut(s) 521, 535, 625, 658
TaiI ACGT 2 cut(s) 543, 552
TaqI TCGA 3 cut(s) 113, 471, 735
TatI WGTACW 1 cut(s) 705
TauI GCSGC 3 cut(s) 348, 587, 590
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 2 cut(s) 191, 194
Tsp45I GTSAC 1 cut(s) 529
TspGWI ACGGA 2 cut(s) 517, 685
XspI CTAG 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.