AT5G21920

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012514
Physical Location & Seq
Reverse (-)
7241201 .. 7242880
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21920.2

Sequence Viewer

Length: 756 bp
ATGGAGGCGAGTGCGAATGAACCAGCTATGAAAAGCTTGAAATCCAATCCTTCAGGACCGATACCGAACTTTTTCGTATCGCTCTCTTCGGCATTTACGCAAACACCTCTTGTGCGTTCGAACAAACCCAATTTGCTTCTTCTACCACCAGTTGCAGACTCCGTCAAATTGATTCAAGACTTTCATCAGTCTCTGATTTCTGCTACTGAGAAATTTAAAGGATTCCTCCATTCGCTCGCCTCTAAGAACCCTCTCTTTCAGGAAGCGGTTCGCCTATCTTCCGAATTTCACATTTTGTGCGACGAGATTCGTTTGAGAAACACTACAAGGGTGAGGTTTGCGATGTCTAATCACGGATTTGCAGCGGTTCTGCCTGGAGATTCAGTTGCAGGATTGGTGGTTGCTAATGGTTTGATCAATTTCCTCAACATATATAACACCATCCTTGTCGTCCGTCTAGTACTCACCTGGTTCCCGAGTGCTCCTCCTGCCATTGTTAACCCCCTCAGCACTTTATGTGATCCATACTTGAACATTTTCCGGGGATTCATACCGCCTCTTGGAGGATTAGATTTGTCTCCCATTTTGGCGTTCCTTGTTCTCAACGCCTTCACCAGCTCGGCTATGGCACTTCCTTGCGAACTCCCGTCAGCTGATGGAGCCGTTTCTCCAGCTTCTAGTGAGACAAAGTGGGTGAGAAGGAGAAGGTTGAGCAGCCACAAAGACCACAGACCGAGCTCAGCTTCTATGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

251

Amino Acids

27.27

Weight (kDa)

9.51

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 266, 365, 554
AclWI GGATC 1 cut(s) 515
AcsI RAATTY 2 cut(s) 212, 284
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 560, 563
AgsI TTSAA 3 cut(s) 40, 176, 532
AjnI CCWGG 2 cut(s) 373, 467
AluBI AGCT 7 cut(s) 26, 36, 618, 653, 674, 738, 743
AluI AGCT 7 cut(s) 26, 36, 618, 653, 674, 738, 743
Alw21I GWGCWC 2 cut(s) 484, 740
Alw26I GTCTC 3 cut(s) 195, 582, 677
AlwI GGATC 1 cut(s) 515
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 362, 714
ApoI RAATTY 2 cut(s) 212, 284
Asp700I GAANNNNTTC 3 cut(s) 71, 267, 536
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 4 cut(s) 343, 457, 604, 706
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 740
Bbv12I GWGCWC 2 cut(s) 484, 740
BbvCI CCTCAGC 1 cut(s) 506
BbvI GCAGC 2 cut(s) 374, 726
BccI CCATC 2 cut(s) 449, 650
BceAI ACGGC 1 cut(s) 647
BciT130I CCWGG 2 cut(s) 375, 469
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 3 cut(s) 195, 582, 677
BfaI CTAG 2 cut(s) 458, 678
BisI GCNGC 2 cut(s) 363, 715
BlpI GCTNAGC 1 cut(s) 739
BlsI GCNGC 2 cut(s) 364, 716
BmcAI AGTACT 1 cut(s) 462
Bme1390I CCNGG 3 cut(s) 375, 469, 542
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 473, 661
BmrFI CCNGG 3 cut(s) 375, 469, 542
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpmI CTGGAG 2 cut(s) 396, 654
Bpu10I CCTNAGC 1 cut(s) 506
Bpu1102I GCTNAGC 1 cut(s) 739
Bpu14I TTCGAA 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 369, 399
Bsc4I CCNNNNNNNGG 2 cut(s) 560, 563
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 2 cut(s) 375, 469
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 560, 563
BseMII CTCAG 3 cut(s) 198, 520, 753
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 374, 726
BsiHKAI GWGCWC 2 cut(s) 484, 740
BsiHKCI CYCGRG 1 cut(s) 475
BsiSI CCGG 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 560, 563
BsmAI GTCTC 3 cut(s) 195, 582, 677
BsoBI CYCGRG 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 484, 740
Bsp143I GATC 2 cut(s) 414, 520
Bsp1720I GCTNAGC 1 cut(s) 739
BspACI CCGC 3 cut(s) 266, 365, 554
BspCNI CTCAG 3 cut(s) 199, 519, 752
BspLI GGNNCC 2 cut(s) 473, 661
BspPI GGATC 1 cut(s) 515
BspT104I TTCGAA 1 cut(s) 119
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 2 cut(s) 414, 520
Bst2UI CCWGG 2 cut(s) 375, 469
Bst6I CTCTTC 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 4 cut(s) 207, 243, 506, 739
BstENI CCTNNNNNAGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 441
BstKTI GATC 2 cut(s) 417, 523
BstMAI GTCTC 3 cut(s) 195, 582, 677
BstMBI GATC 2 cut(s) 414, 520
BstMWI GCNNNNNNNGC 2 cut(s) 488, 659
BstNI CCWGG 2 cut(s) 375, 469
BstSCI CCNGG 3 cut(s) 373, 467, 540
BstV1I GCAGC 2 cut(s) 374, 726
BtgZI GCGATG 1 cut(s) 356
BtsCI GGATG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 56
CsiI ACCWGGT 1 cut(s) 467
Csp6I GTAC 1 cut(s) 461
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 4 cut(s) 207, 243, 506, 739
DpnI GATC 2 cut(s) 416, 522
DpnII GATC 2 cut(s) 414, 520
DraI TTTAAA 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 1 cut(s) 738
Eco24I GRGCYC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 561
EcoRII CCWGG 2 cut(s) 373, 467
EcoT38I GRGCYC 1 cut(s) 740
FaiI YATR 9 cut(s) 29, 431, 433, 435, 517, 526, 551, 626, 749
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 363, 715
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 2 cut(s) 363, 715
FspBI CTAG 2 cut(s) 458, 678
GluI GCNGC 2 cut(s) 363, 715
GsuI CTGGAG 2 cut(s) 396, 654
HapII CCGG 1 cut(s) 541
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 6 cut(s) 158, 172, 222, 307, 380, 546
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 1 cut(s) 541
HphI GGTGA 4 cut(s) 343, 457, 604, 706
Hpy166II GTNNAC 1 cut(s) 499
Hpy188I TCNGA 2 cut(s) 195, 283
Hpy188III TCNNGA 4 cut(s) 54, 176, 260, 475
Hpy8I GTNNAC 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 4 cut(s) 60, 619, 693, 699
HpyCH4V TGCA 3 cut(s) 155, 362, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 659
HpyF3I CTNAG 4 cut(s) 207, 243, 506, 739
Ksp22I TGATCA 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 499
Kzo9I GATC 2 cut(s) 414, 520
LmnI GCTCC 2 cut(s) 487, 659
Lsp1109I GCAGC 2 cut(s) 374, 726
MabI ACCWGGT 1 cut(s) 467
MaeI CTAG 2 cut(s) 458, 678
MalI GATC 2 cut(s) 416, 522
MboI GATC 2 cut(s) 414, 520
MboII GAAGA 3 cut(s) 78, 131, 270
MhlI GDGCHC 2 cut(s) 484, 740
MluCI AATT 5 cut(s) 130, 167, 212, 284, 418
MlyI GAGTC 1 cut(s) 152
MroXI GAANNNNTTC 3 cut(s) 71, 267, 536
MseI TTAA 2 cut(s) 216, 498
MspA1I CMGCKG 2 cut(s) 365, 653
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 3 cut(s) 375, 469, 542
MvaI CCWGG 2 cut(s) 375, 469
MwoI GCNNNNNNNGC 2 cut(s) 488, 659
NciI CCSGG 1 cut(s) 542
NdeII GATC 2 cut(s) 414, 520
NlaIV GGNNCC 2 cut(s) 473, 661
NmeAIII GCCGAG 1 cut(s) 599
NspV TTCGAA 1 cut(s) 119
PdmI GAANNNNTTC 3 cut(s) 71, 267, 536
PfeI GAWTC 5 cut(s) 172, 222, 307, 380, 546
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 364, 716
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 373, 467
PspGI CCWGG 2 cut(s) 373, 467
PspN4I GGNNCC 2 cut(s) 473, 661
PspPI GGNCC 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 2 cut(s) 216, 498
SatI GCNGC 2 cut(s) 363, 715
Sau3AI GATC 2 cut(s) 414, 520
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 1 cut(s) 462
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 3 cut(s) 375, 469, 542
SduI GDGCHC 2 cut(s) 484, 740
SexAI ACCWGGT 1 cut(s) 467
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 1 cut(s) 56
Sse9I AATT 5 cut(s) 130, 167, 212, 284, 418
SsiI CCGC 3 cut(s) 266, 365, 554
SspMI CTAG 2 cut(s) 458, 678
SstI GAGCTC 1 cut(s) 740
StyD4I CCNGG 3 cut(s) 373, 467, 540
TaqI TCGA 1 cut(s) 119
TaqII GACCGA 2 cut(s) 73, 748
TasI AATT 5 cut(s) 130, 167, 212, 284, 418
TatI WGTACW 1 cut(s) 460
TfiI GAWTC 5 cut(s) 172, 222, 307, 380, 546
Tru1I TTAA 2 cut(s) 216, 498
Tru9I TTAA 2 cut(s) 216, 498
TseI GCWGC 2 cut(s) 362, 714
TspDTI ATGAA 4 cut(s) 33, 44, 173, 538
TspGWI ACGGA 3 cut(s) 151, 369, 443
Tth111I GACNNNGTC 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 561
XapI RAATTY 2 cut(s) 212, 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XmnI GAANNNNTTC 3 cut(s) 71, 267, 536
XspI CTAG 2 cut(s) 458, 678
ZrmI AGTACT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.