pycom08g05960

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012514
Physical Location & Seq
Reverse (-)
4505283 .. 4505987
705 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05960.2

Sequence Viewer

Length: 564 bp
ATGAAGCTAAACTGGTTAACTACCAAAGTACAAAACAAAAACGAGTGGAGAGAAAACGTCGTCGTTCCCAAGCACAACGCCTGGGAAAAACAACACCAATTATCCAAAATACTCTCGTCTCCTCTGATCCAACGCTTTATCTGGTTCAGCTCTGCCACCTGGCTCCCCGCCACCACCAACGCTCGACAATGGCGATCGGCGAGTCGGCCTCCGCCCGCCACCGAAACCCCAAAGTCTTTGGCGCCAAACTTTTCAATGCTACTTTCTTCAACCAATTTCGCACCTTTTCTCAGAGTATCACCGTCGTCATCCTCCTCCTCCGCAGCTGCAGCTTCCAAGAAGCCCCATTTCGTTCTTCCCGACATTCCTTCTTCGGTTGCATCCGCCGCCGATAAGTTCTCCCAATTTCTTCACTCGTTGGCTTCACAAACTCCATTTCTCAGCAAGCTCATCTCTTTGCGCTGTGAGTTTCAAAGCATCTGCCAGCAGATTGGGTGCAGAAATCATAGGCAGGTGAAGACATTATCGGCTCACAATTTTGCGGCGGTGTTGCCGGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

10.45

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 241
AciI CCGC 8 cut(s) 168, 212, 216, 321, 384, 387, 542, 545
AclWI GGATC 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 30
AgsI TTSAA 3 cut(s) 255, 270, 473
AjnI CCWGG 2 cut(s) 80, 158
AluBI AGCT 5 cut(s) 7, 150, 326, 332, 448
AluI AGCT 5 cut(s) 7, 150, 326, 332, 448
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 121
AoxI GGCC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 323, 326, 329
AspLEI GCGC 2 cut(s) 244, 462
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 291, 526
BanI GGYRCC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 3 cut(s) 313, 335, 341
BciT130I CCWGG 2 cut(s) 82, 160
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 5 cut(s) 324, 327, 330, 387, 543
BlsI GCNGC 5 cut(s) 325, 328, 331, 388, 544
Bme1390I CCNGG 3 cut(s) 82, 160, 555
BmiI GGNNCC 2 cut(s) 164, 243
BmrFI CCNGG 3 cut(s) 82, 160, 555
BmsI GCATC 2 cut(s) 389, 486
BpiI GAAGAC 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpuMI CCSGG 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 2 cut(s) 82, 160
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 308, 380
BseMII CTCAG 2 cut(s) 304, 454
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 111, 304, 307
BseXI GCAGC 3 cut(s) 313, 335, 341
BsgI GTGCAG 1 cut(s) 517
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 241
BsiEI CGRYCG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 123
BsmBI CGTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 126, 194
BspACI CCGC 8 cut(s) 168, 212, 216, 321, 384, 387, 542, 545
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 2 cut(s) 303, 453
BspLI GGNNCC 2 cut(s) 164, 243
BspMAI CTGCAG 1 cut(s) 331
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 241
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 126, 194
BssNI GRCGYC 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 82, 160
Bst4CI ACNGT 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 216, 446, 485
BstDEI CTNAG 2 cut(s) 290, 440
BstF5I GGATG 2 cut(s) 308, 380
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 2 cut(s) 244, 462
BstKTI GATC 2 cut(s) 129, 197
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 126, 194
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 2 cut(s) 329, 386
BstNI CCWGG 2 cut(s) 82, 160
BstSCI CCNGG 3 cut(s) 80, 158, 553
BstSFI CTRYAG 1 cut(s) 327
BstV1I GCAGC 3 cut(s) 313, 335, 341
BstV2I GAAGAC 1 cut(s) 524
BstXI CCANNNNNNTGG 1 cut(s) 491
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 308, 380
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 216, 446, 485
CfoI GCGC 2 cut(s) 244, 462
Csp6I GTAC 1 cut(s) 29
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 2 cut(s) 290, 440
DinI GGCGCC 1 cut(s) 243
DpnI GATC 2 cut(s) 128, 196
DpnII GATC 2 cut(s) 126, 194
EciI GGCGGA 2 cut(s) 201, 373
EcoRII CCWGG 2 cut(s) 80, 158
EgeI GGCGCC 1 cut(s) 243
EheI GGCGCC 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 123
FaiI YATR 1 cut(s) 507
FauI CCCGC 2 cut(s) 175, 223
Fnu4HI GCNGC 5 cut(s) 324, 327, 330, 387, 543
FokI GGATG 2 cut(s) 295, 367
Fsp4HI GCNGC 5 cut(s) 324, 327, 330, 387, 543
GlaI GCGC 2 cut(s) 243, 461
GluI GCNGC 5 cut(s) 324, 327, 330, 387, 543
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 554
HhaI GCGC 2 cut(s) 244, 462
Hin1I GRCGYC 1 cut(s) 242
Hin6I GCGC 2 cut(s) 242, 460
HinP1I GCGC 2 cut(s) 242, 460
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 1 cut(s) 202
HpaI GTTAAC 1 cut(s) 18
HpaII CCGG 1 cut(s) 554
HphI GGTGA 2 cut(s) 291, 526
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 126, 293
Hpy188III TCNNGA 1 cut(s) 359
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 3 cut(s) 62, 65, 307
HpyAV CCTTC 1 cut(s) 378
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 329, 380, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 386
HpyF3I CTNAG 2 cut(s) 290, 440
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 242
HspAI GCGC 2 cut(s) 242, 460
KasI GGCGCC 1 cut(s) 241
KspAI GTTAAC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 126, 194
LmnI GCTCC 1 cut(s) 168
LpnPI CCDG 7 cut(s) 67, 94, 127, 145, 172, 497, 497
Lsp1109I GCAGC 3 cut(s) 313, 335, 341
LweI GCATC 2 cut(s) 389, 486
MaeII ACGT 1 cut(s) 57
MalI GATC 2 cut(s) 128, 196
MboI GATC 2 cut(s) 126, 194
MboII GAAGA 5 cut(s) 258, 347, 363, 401, 529
MluCI AATT 4 cut(s) 98, 274, 404, 535
Mly113I GGCGCC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 5 cut(s) 132, 219, 322, 325, 328
MseI TTAA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 82, 160, 555
MvaI CCWGG 2 cut(s) 82, 160
MwoI GCNNNNNNNGC 2 cut(s) 329, 386
NarI GGCGCC 1 cut(s) 242
NciI CCSGG 1 cut(s) 555
NdeII GATC 2 cut(s) 126, 194
NlaIV GGNNCC 2 cut(s) 164, 243
PaqCI CACCTGC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 2 cut(s) 190, 357
PkrI GCNGC 5 cut(s) 325, 328, 331, 388, 544
Ple19I CGATCG 1 cut(s) 197
PleI GAGTC 1 cut(s) 210
PluTI GGCGCC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 80, 158
PspGI CCWGG 2 cut(s) 80, 158
PspN4I GGNNCC 2 cut(s) 164, 243
PstI CTGCAG 1 cut(s) 331
PvuI CGATCG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 5 cut(s) 324, 327, 330, 387, 543
Sau3AI GATC 2 cut(s) 126, 194
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 3 cut(s) 82, 160, 555
SetI ASST 9 cut(s) 9, 60, 152, 161, 286, 328, 334, 450, 516
SfaNI GCATC 2 cut(s) 389, 486
SfcI CTRYAG 1 cut(s) 327
SfoI GGCGCC 1 cut(s) 243
Sse9I AATT 4 cut(s) 98, 274, 404, 535
SsiI CCGC 8 cut(s) 168, 212, 216, 321, 384, 387, 542, 545
SspDI GGCGCC 1 cut(s) 241
StyD4I CCNGG 3 cut(s) 80, 158, 553
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 184
TasI AATT 4 cut(s) 98, 274, 404, 535
TatI WGTACW 1 cut(s) 28
TauI GCSGC 2 cut(s) 389, 545
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseI GCWGC 3 cut(s) 323, 326, 329
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.