MD15G1049500.v1.1

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012514
Physical Location & Seq
Forward (+)
3386162 .. 3388095
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1049500.v1.1.491

Sequence Viewer

Length: 921 bp
ATGAACACCAAAATACCAAAGAAAAAACTAGTGGAGAGAAAACGTCGTCGTTGCAAGCACACAACGCCAGGGAAATACAACACCAATTATCCAAAAATACTCTCCTCTGATCCTACGCTTTATCTGGTTCAGCTTCTGCTTCCTCACCACCACCGAACGAAAATGGCTCCCAGCGAGTCGGCCTCCGCCACCGAAACCCCAAAACCTCTGGCACCAAGCTTTGGAATGCTACTTTCTTCCACCAACTTCGCACCATTTCTCAGAGCATCATCGTCGTCATCATCCTCCAAGAAGCCCCATTTTGTTCTTCCGGACATTCCCGCTTCGATTGCATCCGCCGCCAATAAGTGCTCCCAATTGCTTCACTCGCTGGCTTCTCAAAACCCGCTTCTCAGCAAGCTAATCTCTTTGCGCTGCGAATTTCAAAGTATCTGCCACCAGATTGGGTGCAGAAAGAACAATCAGGTGAAGGCTTTATCAGCTCACAATTTTGCGGCGGTTTTGCCGGGAGATTCGGTGGCGGGGCTTGTGGTGGCAAACGGCATCTCCAACTTCTTGAACTTGTACAACACTCTCTTGGTTGTTAGGCTTGTCCTCACCTGGTTCCCCAACTCCCCTCCTGCCATTGTTGGCCCCCTCAGCACAATATGTGATCCGTACTTGAACATATTTCGGGGGTTAATCCCACCGCTTGGAGGCTCATTGGATCTCTCCCCCATTCTGGCATTCTTGGTTTTGAATGCCTTTACAAGCACAGCTGCTGCATTACCTGCAGAGCTTCCAGCATCACCGTCGTCAGTAGCTTCCCAAGAACTCACTGCTTCTCCTACCGAAATCGCTAACCTCTCTACATGTCAAAAGAAATGGATGACGAGACTTCAGGGCAACAACAACACAAAGAGCTCAGGCGGTGTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

307

Amino Acids

32.85

Weight (kDa)

9.9

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 185 - 249 4.8e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 211
AccB7I CCANNNNNTGG 2 cut(s) 221, 692
AccIII TCCGGA 1 cut(s) 310
AclWI GGATC 3 cut(s) 104, 647, 714
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 863
AfaI GTAC 2 cut(s) 566, 659
AfiI CCNNNNNNNGG 4 cut(s) 221, 692, 695, 721
AflIII ACRYGT 1 cut(s) 851
AgsI TTSAA 4 cut(s) 425, 559, 664, 739
AhlI ACTAGT 1 cut(s) 28
AjnI CCWGG 2 cut(s) 67, 599
AluBI AGCT 8 cut(s) 133, 219, 400, 482, 758, 778, 803, 903
AluI AGCT 8 cut(s) 133, 219, 400, 482, 758, 778, 803, 903
Alw21I GWGCWC 2 cut(s) 353, 905
Alw26I GTCTC 1 cut(s) 868
AlwI GGATC 3 cut(s) 104, 647, 714
AlwNI CAGNNNCTG 2 cut(s) 136, 761
Aor13HI TCCGGA 1 cut(s) 310
AoxI GGCC 2 cut(s) 180, 631
ApeKI GCWGC 3 cut(s) 414, 758, 761
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 1 cut(s) 414
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 1 cut(s) 507
AsuHPI GGTGA 4 cut(s) 137, 478, 589, 780
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 905
Bbv12I GWGCWC 2 cut(s) 353, 905
BbvCI CCTCAGC 1 cut(s) 638
BbvI GCAGC 3 cut(s) 401, 745, 748
BceAI ACGGC 1 cut(s) 556
BcgI CGANNNNNNTGC 4 cut(s) 255, 289, 774, 808
BciT130I CCWGG 2 cut(s) 69, 601
BcnI CCSGG 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 868
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 771
BfuAI ACCTGC 1 cut(s) 778
BisI GCNGC 5 cut(s) 339, 415, 495, 759, 762
BlsI GCNGC 5 cut(s) 340, 416, 496, 760, 763
Bme1390I CCNGG 3 cut(s) 69, 507, 601
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 4 cut(s) 168, 213, 605, 634
BmrFI CCNGG 3 cut(s) 69, 507, 601
BmsI GCATC 4 cut(s) 275, 341, 552, 794
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu10I CCTNAGC 2 cut(s) 638, 904
BpuMI CCSGG 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 6 cut(s) 501, 530, 531, 560, 808, 838
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 692, 695, 721
BseAI TCCGGA 1 cut(s) 310
BseBI CCWGG 2 cut(s) 69, 601
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 3 cut(s) 281, 332, 873
BseLI CCNNNNNNNGG 4 cut(s) 221, 692, 695, 721
BseMII CTCAG 4 cut(s) 274, 406, 652, 918
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 401, 745, 748
BseYI CCCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 469
BshFI GGCC 2 cut(s) 182, 633
BshNI GGYRCC 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 353, 905
BsiSI CCGG 2 cut(s) 311, 506
BslI CCNNNNNNNGG 4 cut(s) 221, 692, 695, 721
BsmAI GTCTC 1 cut(s) 868
BsmI GAATGC 3 cut(s) 231, 725, 745
BsnI GGCC 2 cut(s) 182, 633
Bsp1286I GDGCHC 2 cut(s) 353, 905
Bsp13I TCCGGA 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 3 cut(s) 109, 652, 706
BspANI GGCC 2 cut(s) 182, 633
BspCNI CTCAG 4 cut(s) 273, 405, 651, 917
BspEI TCCGGA 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 168, 213, 605, 634
BspMAI CTGCAG 1 cut(s) 775
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 3 cut(s) 104, 647, 714
BspT107I GGYRCC 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 3 cut(s) 109, 652, 706
Bst2UI CCWGG 2 cut(s) 69, 601
Bst4CI ACNGT 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 770
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 3 cut(s) 56, 372, 398
BstDEI CTNAG 4 cut(s) 260, 392, 638, 904
BstF5I GGATG 3 cut(s) 281, 332, 873
BstHHI GCGC 1 cut(s) 414
BstKTI GATC 3 cut(s) 112, 655, 709
BstMAI GTCTC 1 cut(s) 868
BstMBI GATC 3 cut(s) 109, 652, 706
BstMWI GCNNNNNNNGC 7 cut(s) 64, 329, 338, 367, 479, 639, 770
BstNI CCWGG 2 cut(s) 69, 601
BstNSI RCATGY 1 cut(s) 855
BstSCI CCNGG 3 cut(s) 67, 505, 599
BstSFI CTRYAG 1 cut(s) 771
BstV1I GCAGC 3 cut(s) 401, 745, 748
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 2 cut(s) 182, 633
BtsCI GGATG 3 cut(s) 281, 332, 873
BtsI GCAGTG 1 cut(s) 816
BtsIMutI CAGTG 1 cut(s) 816
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 3 cut(s) 56, 372, 398
CaiI CAGNNNCTG 2 cut(s) 136, 761
CfoI GCGC 1 cut(s) 414
Cfr13I GGNCC 1 cut(s) 632
CsiI ACCWGGT 1 cut(s) 599
Csp6I GTAC 2 cut(s) 565, 658
CviAII CATG 1 cut(s) 852
CviQI GTAC 2 cut(s) 565, 658
DdeI CTNAG 4 cut(s) 260, 392, 638, 904
DpnI GATC 3 cut(s) 111, 654, 708
DpnII GATC 3 cut(s) 109, 652, 706
EciI GGCGGA 2 cut(s) 175, 325
Ecl136II GAGCTC 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 905
Eco53kI GAGCTC 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 863
EcoICRI GAGCTC 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 67, 599
EcoT38I GRGCYC 1 cut(s) 905
FaeI CATG 1 cut(s) 855
FaiI YATR 3 cut(s) 649, 668, 853
FatI CATG 1 cut(s) 851
FauI CCCGC 3 cut(s) 328, 393, 514
Fnu4HI GCNGC 5 cut(s) 339, 415, 495, 759, 762
FokI GGATG 3 cut(s) 268, 319, 880
FriOI GRGCYC 1 cut(s) 905
Fsp4HI GCNGC 5 cut(s) 339, 415, 495, 759, 762
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 413
GluI GCNGC 5 cut(s) 339, 415, 495, 759, 762
GsaI CCCAGC 1 cut(s) 174
HaeIII GGCC 2 cut(s) 182, 633
HapII CCGG 2 cut(s) 311, 506
HhaI GCGC 1 cut(s) 414
Hin1II CATG 1 cut(s) 855
Hin6I GCGC 1 cut(s) 412
HinP1I GCGC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 2 cut(s) 176, 512
HpaII CCGG 2 cut(s) 311, 506
HphI GGTGA 4 cut(s) 137, 478, 589, 780
Hpy188I TCNGA 2 cut(s) 109, 263
Hpy188III TCNNGA 2 cut(s) 311, 556
Hpy99I CGWCG 4 cut(s) 48, 51, 277, 796
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 1 cut(s) 792
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 54, 332, 450, 764, 773
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 329, 338, 367, 479, 639, 770
HpyF3I CTNAG 4 cut(s) 260, 392, 638, 904
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 1 cut(s) 855
HspAI GCGC 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 109, 652, 706
LmnI GCTCC 2 cut(s) 172, 356
Lsp1109I GCAGC 3 cut(s) 401, 745, 748
LweI GCATC 4 cut(s) 275, 341, 552, 794
MabI ACCWGGT 1 cut(s) 599
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 43
MalI GATC 3 cut(s) 111, 654, 708
MboI GATC 3 cut(s) 109, 652, 706
MboII GAAGA 2 cut(s) 228, 299
MfeI CAATTG 1 cut(s) 356
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 2 cut(s) 353, 905
MluCI AATT 5 cut(s) 85, 356, 419, 487, 916
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 573
MroI TCCGGA 1 cut(s) 310
MseI TTAA 1 cut(s) 680
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 2 cut(s) 311, 506
MspR9I CCNGG 3 cut(s) 69, 507, 601
MunI CAATTG 1 cut(s) 356
Mva1269I GAATGC 3 cut(s) 231, 725, 745
MvaI CCWGG 2 cut(s) 69, 601
MwoI GCNNNNNNNGC 7 cut(s) 64, 329, 338, 367, 479, 639, 770
NciI CCSGG 1 cut(s) 507
NdeII GATC 3 cut(s) 109, 652, 706
NlaIII CATG 1 cut(s) 855
NlaIV GGNNCC 4 cut(s) 168, 213, 605, 634
NspI RCATGY 1 cut(s) 855
PciI ACATGT 1 cut(s) 851
PctI GAATGC 3 cut(s) 231, 725, 745
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 2 cut(s) 221, 692
PkrI GCNGC 5 cut(s) 340, 416, 496, 760, 763
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PscI ACATGT 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 905
Psp6I CCWGG 2 cut(s) 67, 599
PspFI CCCAGC 1 cut(s) 170
PspGI CCWGG 2 cut(s) 67, 599
PspN4I GGNNCC 4 cut(s) 168, 213, 605, 634
PspPI GGNCC 1 cut(s) 632
PstI CTGCAG 1 cut(s) 775
PstNI CAGNNNCTG 2 cut(s) 136, 761
PsuI RGATCY 1 cut(s) 706
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 2 cut(s) 566, 659
RsaNI GTAC 2 cut(s) 565, 658
SacI GAGCTC 1 cut(s) 905
SaqAI TTAA 1 cut(s) 680
SatI GCNGC 5 cut(s) 339, 415, 495, 759, 762
Sau3AI GATC 3 cut(s) 109, 652, 706
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 69, 507, 601
SduI GDGCHC 2 cut(s) 353, 905
SexAI ACCWGGT 1 cut(s) 599
SfaNI GCATC 4 cut(s) 275, 341, 552, 794
SfcI CTRYAG 1 cut(s) 771
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 5 cut(s) 85, 356, 419, 487, 916
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 905
StyD4I CCNGG 3 cut(s) 67, 505, 599
TaaI ACNGT 1 cut(s) 792
TaiI ACGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 326
TasI AATT 5 cut(s) 85, 356, 419, 487, 916
TatI WGTACW 1 cut(s) 564
TauI GCSGC 2 cut(s) 341, 497
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 1 cut(s) 680
Tru9I TTAA 1 cut(s) 680
TscAI CASTG 1 cut(s) 823
TseI GCWGC 3 cut(s) 414, 758, 761
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 645
TspRI CASTG 1 cut(s) 823
Van91I CCANNNNNTGG 2 cut(s) 221, 692
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 855
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.