Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021201.1

Orthogroup ID

OG0012514

Physical Location & Seq

Genomic Coordinates Forward (+)

9679 .. 10762

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021201.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgcccgggatacattttacgcaaattatccaaatcgagtacccgtcttctgatccacacttgttctgcttttgcttcttcttcttcttcttagctcaactccagaaaatggctcagagcgagttggcctccgccactgagtccccaaaatcgttgccgcccaccccacattttactccatacttctcaatgctactctccccaaccaatttcgcaccatttctcagatcatcatcaccctcctcatcttgttccaagaagcccagttttgttctcgccgatattcaatcttccatcgcttccgcaacccacaactgcctcgaattgctccactcactggcttcgcagaacccttttctcaacaaactaatctccttccatggcgaattccagagtttctgccaccaggttcagactacgaggtacaggaagttgaagagtttatctactcacaatttcgccgcggttttacccggggactcagtggccggacttgtcgttgcaaatggggtctccaacttcttgaacttatacaacactctattggtctgcaggcttgtgttgacctggttcccaaactcccctcctgccattgtcggccctctcagtacaatatgtgacccttacttgaacatatttcgggggctaatcccgccactcggcggcacattggatctctctcccattctggcattcttggttctaaatgcctttacaagcacagccgccgccctaccggccgagcttccagcatcaccggcagcttcccaagaactcggtgcttcttctgctactggaattactcacctcactacgccgcagaagaaatggatcacaaggcttcagggcagtaacacaaagagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

288

Amino Acids

31.21

Weight (kDa)

8.7

Isoelectric Point (pI)

53.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21920 AT5G21920
fragaria_vesca	FvH4_2g30940 FvH4_2g30940
malus_domestica	MD15G1049500.v1.1
prunus_persica	Prupe.1G403800_v2.0.a1
pyrus_communis	pycom08g05960 pycom15g04830
rosa_chinensis	RchiOBHm_Chr6g0311911
rosa_laevigata	RLG00000010369
rosa_multiflora	Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii	Rroxscaffold_7G00157230
rosa_rugosa	Rorug06G0391300
rosa_samantha	Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana	Rw6G044190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	109, 337
AccII	CGCG	1 cut(s)	464
AclWI	GGATC	3 cut(s)	47, 681, 839
AcoI	YGGCCR	2 cut(s)	486, 738
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	3 cut(s)	41, 425, 610
AfiI	CCNNNNNNNGG	4 cut(s)	109, 337, 659, 662
AgsI	TTSAA	4 cut(s)	287, 436, 526, 631
AjnI	CCWGG	2 cut(s)	405, 566
AluBI	AGCT	4 cut(s)	95, 745, 764, 864
AluI	AGCT	4 cut(s)	95, 745, 764, 864
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	47, 681, 839
Ama87I	CYCGRG	2 cut(s)	5, 473
AoxI	GGCC	4 cut(s)	126, 486, 598, 738
ApeKI	GCWGC	1 cut(s)	761
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	599
AsuC2I	CCSGG	4 cut(s)	6, 7, 474, 475
AsuHPI	GGTGA	3 cut(s)	228, 747, 797
AvaI	CYCGRG	2 cut(s)	5, 473
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	773
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	407, 568
BciVI	GTATCC	1 cut(s)	3
BcnI	CCSGG	4 cut(s)	6, 7, 474, 475
BcoDI	GTCTC	1 cut(s)	517
BfmI	CTRYAG	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	3
BglI	GCCNNNNNGGC	1 cut(s)	737
BisI	GCNGC	7 cut(s)	158, 462, 664, 726, 729, 762, 818
BlsI	GCNGC	7 cut(s)	159, 463, 665, 727, 730, 763, 819
Bme1390I	CCNGG	6 cut(s)	6, 7, 407, 474, 475, 568
BmeT110I	CYCGRG	2 cut(s)	5, 473
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	6 cut(s)	6, 7, 407, 474, 475, 568
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	86
BpuMI	CCSGG	4 cut(s)	6, 7, 474, 475
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	5 cut(s)	5, 379, 462, 473, 474
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 337, 659, 662
Bse118I	RCCGGY	2 cut(s)	736, 757
Bse1I	ACTGG	3 cut(s)	264, 342, 799
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	407, 568
BseDI	CCNNGG	5 cut(s)	5, 379, 462, 473, 474
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	4 cut(s)	109, 337, 659, 662
BseMII	CTCAG	5 cut(s)	128, 129, 238, 495, 619
BseNI	ACTGG	3 cut(s)	264, 342, 799
BseRI	GAGGAG	1 cut(s)	232
BseX3I	CGGCCG	1 cut(s)	738
BseXI	GCAGC	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	4 cut(s)	128, 488, 600, 740
BsiEI	CGRYCG	1 cut(s)	741
BsiHKCI	CYCGRG	2 cut(s)	5, 473
BsiSI	CCGG	5 cut(s)	6, 474, 489, 737, 758
BslFI	GGGAC	2 cut(s)	127, 491
BslI	CCNNNNNNNGG	4 cut(s)	109, 337, 659, 662
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	2 cut(s)	127, 491
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	4 cut(s)	128, 488, 600, 740
Bso31I	GGTCTC	1 cut(s)	517
BsoBI	CYCGRG	2 cut(s)	5, 473
Bsp143I	GATC	4 cut(s)	52, 227, 673, 831
Bsp19I	CCATGG	1 cut(s)	379
BspANI	GGCC	4 cut(s)	128, 488, 600, 740
BspCNI	CTCAG	5 cut(s)	127, 130, 237, 494, 618
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	572
BspMAI	CTGCAG	1 cut(s)	554
BspPI	GGATC	3 cut(s)	47, 681, 839
BspTNI	GGTCTC	1 cut(s)	517
BsrFI	RCCGGY	2 cut(s)	736, 757
BsrI	ACTGG	3 cut(s)	264, 342, 799
BssAI	RCCGGY	2 cut(s)	736, 757
BssECI	CCNNGG	5 cut(s)	5, 379, 462, 473, 474
BssMI	GATC	4 cut(s)	52, 227, 673, 831
BssT1I	CCWWGG	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	407, 568
Bst6I	CTCTTC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	6 cut(s)	91, 114, 138, 224, 481, 605
BstDSI	CCRYGG	2 cut(s)	379, 462
BstFNI	CGCG	1 cut(s)	464
BstKTI	GATC	4 cut(s)	55, 230, 676, 834
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	52, 227, 673, 831
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	4 cut(s)	652, 737, 758, 788
BstNI	CCWGG	2 cut(s)	407, 568
BstSCI	CCNGG	6 cut(s)	4, 5, 405, 472, 473, 566
BstSFI	CTRYAG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	773
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BstZI	CGGCCG	1 cut(s)	738
BsuI	GTATCC	1 cut(s)	3
BsuRI	GGCC	4 cut(s)	128, 488, 600, 740
BtgI	CCRYGG	2 cut(s)	379, 462
BtgZI	GCGATG	1 cut(s)	280
BtsIMutI	CAGTG	3 cut(s)	135, 335, 489
Cac8I	GCNNGC	1 cut(s)	554
Cfr10I	RCCGGY	2 cut(s)	736, 757
Cfr13I	GGNCC	1 cut(s)	599
Cfr42I	CCGCGG	1 cut(s)	465
Cfr9I	CCCGGG	2 cut(s)	5, 473
CsiI	ACCWGGT	2 cut(s)	405, 566
Csp6I	GTAC	3 cut(s)	40, 424, 609
CviAII	CATG	1 cut(s)	380
CviQI	GTAC	3 cut(s)	40, 424, 609
DdeI	CTNAG	6 cut(s)	91, 114, 138, 224, 481, 605
DpnI	GATC	4 cut(s)	54, 229, 675, 833
DpnII	GATC	4 cut(s)	52, 227, 673, 831
EaeI	YGGCCR	2 cut(s)	486, 738
EagI	CGGCCG	1 cut(s)	738
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	517
Eco52I	CGGCCG	1 cut(s)	738
Eco57I	CTGAAG	1 cut(s)	827
Eco88I	CYCGRG	2 cut(s)	5, 473
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	405, 566
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	1 cut(s)	383
FaiI	YATR	5 cut(s)	181, 381, 532, 616, 635
FaqI	GGGAC	2 cut(s)	127, 491
FatI	CATG	1 cut(s)	379
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	7 cut(s)	158, 462, 664, 726, 729, 762, 818
Fsp4HI	GCNGC	7 cut(s)	158, 462, 664, 726, 729, 762, 818
GluI	GCNGC	7 cut(s)	158, 462, 664, 726, 729, 762, 818
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	4 cut(s)	128, 488, 600, 740
HapII	CCGG	5 cut(s)	6, 474, 489, 737, 758
Hin1II	CATG	1 cut(s)	383
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	2 cut(s)	140, 479
HpaII	CCGG	5 cut(s)	6, 474, 489, 737, 758
HphI	GGTGA	3 cut(s)	228, 747, 797
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	4 cut(s)	52, 117, 227, 414
Hpy188III	TCNNGA	3 cut(s)	103, 391, 523
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	503, 552
HpyF10VI	GCNNNNNNNGC	4 cut(s)	652, 737, 758, 788
HpyF3I	CTNAG	6 cut(s)	91, 114, 138, 224, 481, 605
Hsp92II	CATG	1 cut(s)	383
KspI	CCGCGG	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	52, 227, 673, 831
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	1 cut(s)	773
LweI	GCATC	1 cut(s)	761
MabI	ACCWGGT	2 cut(s)	405, 566
MaeIII	GTNAC	2 cut(s)	617, 851
MalI	GATC	4 cut(s)	54, 229, 675, 833
MboI	GATC	4 cut(s)	52, 227, 673, 831
MboII	GAAGA	9 cut(s)	39, 70, 73, 76, 79, 282, 448, 777, 835
MflI	RGATCY	1 cut(s)	673
MluCI	AATT	6 cut(s)	24, 208, 323, 386, 454, 798
MlyI	GAGTC	2 cut(s)	149, 473
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	8 cut(s)	139, 250, 253, 329, 414, 594, 612, 818
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	5 cut(s)	6, 474, 489, 737, 758
MspR9I	CCNGG	6 cut(s)	6, 7, 407, 474, 475, 568
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	2 cut(s)	407, 568
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	4 cut(s)	652, 737, 758, 788
NciI	CCSGG	4 cut(s)	6, 7, 474, 475
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	52, 227, 673, 831
NlaIII	CATG	1 cut(s)	383
NlaIV	GGNNCC	1 cut(s)	572
NmeAIII	GCCGAG	2 cut(s)	639, 766
NmuCI	GTSAC	1 cut(s)	617
PctI	GAATGC	1 cut(s)	692
PflMI	CCANNNNNTGG	2 cut(s)	109, 337
PkrI	GCNGC	7 cut(s)	159, 463, 665, 727, 730, 763, 819
PleI	GAGTC	2 cut(s)	148, 473
PpsI	GAGTC	2 cut(s)	148, 473
Psp6I	CCWGG	2 cut(s)	405, 566
PspGI	CCWGG	2 cut(s)	405, 566
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	599
PstI	CTGCAG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	673
RsaI	GTAC	3 cut(s)	41, 425, 610
RsaNI	GTAC	3 cut(s)	40, 424, 609
SacII	CCGCGG	1 cut(s)	465
SatI	GCNGC	7 cut(s)	158, 462, 664, 726, 729, 762, 818
Sau3AI	GATC	4 cut(s)	52, 227, 673, 831
Sau96I	GGNCC	1 cut(s)	599
SchI	GAGTC	2 cut(s)	149, 473
ScrFI	CCNGG	6 cut(s)	6, 7, 407, 474, 475, 568
SetI	ASST	8 cut(s)	97, 411, 425, 569, 747, 766, 810, 866
SexAI	ACCWGGT	2 cut(s)	405, 566
SfaNI	GCATC	1 cut(s)	761
SfcI	CTRYAG	1 cut(s)	550
Sfr303I	CCGCGG	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	465
SmaI	CCCGGG	2 cut(s)	7, 475
Sse9I	AATT	6 cut(s)	24, 208, 323, 386, 454, 798
StyD4I	CCNGG	6 cut(s)	4, 5, 405, 472, 473, 566
StyI	CCWWGG	1 cut(s)	379
TaqI	TCGA	2 cut(s)	36, 321
TasI	AATT	6 cut(s)	24, 208, 323, 386, 454, 798
TatI	WGTACW	1 cut(s)	608
TauI	GCSGC	6 cut(s)	160, 464, 666, 728, 731, 820
TscAI	CASTG	3 cut(s)	142, 342, 489
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	1 cut(s)	617
TspMI	CCCGGG	2 cut(s)	5, 473
TspRI	CASTG	3 cut(s)	142, 342, 489
Van91I	CCANNNNNTGG	2 cut(s)	109, 337
XapI	RAATTY	1 cut(s)	386
XmaI	CCCGGG	2 cut(s)	5, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.