Rh6DG510200

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012514
Physical Location & Seq
Reverse (-)
66378901 .. 66379870
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG510200.1

Sequence Viewer

Length: 753 bp
ATGGCTCAGAGCGAGTTGGCCTCCGCCACTGAGTCCCCAAAATCATTGCCGCCCACTCCATACTTCTCAATGCTACTCTCCCCAACCAATTTCGCACCATTTCTCAGATCATCATCACCCTCCTCATCTTCTTCCAAGAAGCCCAGTTTTGTTCTTCCCGATATTCAATCTTCCATCGCTTCCGCAACCCACAACTGCCTCGAATTGCTCCACTCACTGGCTTCGCAGAACCCTTTTCTCAACAAACTAATCTCCTTCCATGGCGAATTCCAGAGTTTCTGCCACCAGGTTCAGACTACGAGGTACAGGAAGTTGAAGAGTTTATCTACTCACAATTTCGCGGCGGTTTTACCTGGGGACTCGGTGGCCGGACTTGTCGTTGCAAATGGGGTCTCCAACTTCTTGAACTTATACAACACTCTACTGGTCTGCAGGCTTGTGTTGACCTGGTTCCCAAACTCCCCTCCTGCCATTGTAGGCCCTCTCAGTACAATATGTGACCCTTACTTGAACATATTTCGGGGGCTAATCCCGCCACTCGGAGGCACATTGGATCTCTCTCCCATTCTGGCATTCTTGGTTCTAAATGCCTTTACAAGCACAGCCGCCGCGCTACCGGCCGAGCTTCCAGCATCACCGGCAGCTTCCCAAGAACTCGGTGCTTCTTCTGCTACTGGAATTACTCACCTCACTACGCCGCAGAAGAAATGGATCACAAGGCTTCAGGGTAGGGGTAGCAACACAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

250

Amino Acids

26.62

Weight (kDa)

9.33

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 134 - 198 8.1e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 217
AccII CGCG 2 cut(s) 341, 611
AciI CCGC 9 cut(s) 24, 50, 183, 341, 344, 533, 606, 609, 698
AclWI GGATC 2 cut(s) 561, 719
AcoI YGGCCR 2 cut(s) 366, 618
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 707
AfaI GTAC 2 cut(s) 305, 490
AfiI CCNNNNNNNGG 3 cut(s) 217, 539, 542
AgsI TTSAA 4 cut(s) 167, 316, 406, 511
AjnI CCWGG 3 cut(s) 285, 352, 446
AluBI AGCT 3 cut(s) 625, 644, 750
AluI AGCT 3 cut(s) 625, 644, 750
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 561, 719
AoxI GGCC 4 cut(s) 18, 366, 478, 618
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 613
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 3 cut(s) 108, 627, 677
BbvI GCAGC 1 cut(s) 653
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 3 cut(s) 287, 354, 448
BcoDI GTCTC 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 430
BisI GCNGC 6 cut(s) 50, 342, 606, 609, 642, 698
BlsI GCNGC 6 cut(s) 51, 343, 607, 610, 643, 699
Bme1390I CCNGG 3 cut(s) 287, 354, 448
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 3 cut(s) 287, 354, 448
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 138
BplI GAGNNNNNCTC 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 259, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 539, 542
Bse118I RCCGGY 2 cut(s) 616, 637
Bse1I ACTGG 4 cut(s) 144, 222, 429, 679
Bse3DI GCAATG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 112
BseBI CCWGG 3 cut(s) 287, 354, 448
BseDI CCNNGG 2 cut(s) 259, 353
BseJI GATNNNNATC 1 cut(s) 112
BseLI CCNNNNNNNGG 3 cut(s) 217, 539, 542
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 4 cut(s) 20, 21, 118, 499
BseNI ACTGG 4 cut(s) 144, 222, 429, 679
BseRI GAGGAG 1 cut(s) 112
BseX3I CGGCCG 1 cut(s) 618
BseXI GCAGC 1 cut(s) 653
Bsh1236I CGCG 2 cut(s) 341, 611
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 4 cut(s) 20, 368, 480, 620
BsiEI CGRYCG 1 cut(s) 621
BsiSI CCGG 3 cut(s) 369, 617, 638
BslFI GGGAC 2 cut(s) 19, 371
BslI CCNNNNNNNGG 3 cut(s) 217, 539, 542
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 2 cut(s) 19, 371
BsmI GAATGC 1 cut(s) 572
BsnI GGCC 4 cut(s) 20, 368, 480, 620
Bso31I GGTCTC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 107, 553, 711
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 9 cut(s) 24, 50, 183, 341, 344, 533, 606, 609, 698
BspANI GGCC 4 cut(s) 20, 368, 480, 620
BspCNI CTCAG 4 cut(s) 19, 22, 117, 498
BspFNI CGCG 2 cut(s) 341, 611
BspLI GGNNCC 1 cut(s) 452
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 2 cut(s) 561, 719
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 616, 637
BsrI ACTGG 4 cut(s) 144, 222, 429, 679
BssAI RCCGGY 2 cut(s) 616, 637
BssECI CCNNGG 2 cut(s) 259, 353
BssMI GATC 3 cut(s) 107, 553, 711
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 3 cut(s) 287, 354, 448
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 4 cut(s) 6, 30, 104, 485
BstDSI CCRYGG 1 cut(s) 259
BstFNI CGCG 2 cut(s) 341, 611
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 3 cut(s) 110, 556, 714
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 107, 553, 711
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 4 cut(s) 532, 617, 638, 668
BstNI CCWGG 3 cut(s) 287, 354, 448
BstSCI CCNGG 3 cut(s) 285, 352, 446
BstSFI CTRYAG 1 cut(s) 430
BstUI CGCG 2 cut(s) 341, 611
BstV1I GCAGC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 553
BstYI RGATCY 1 cut(s) 553
BstZI CGGCCG 1 cut(s) 618
BsuRI GGCC 4 cut(s) 20, 368, 480, 620
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 27, 215
Cac8I GCNNGC 1 cut(s) 434
CfoI GCGC 1 cut(s) 613
Cfr10I RCCGGY 2 cut(s) 616, 637
Cfr13I GGNCC 1 cut(s) 479
CsiI ACCWGGT 2 cut(s) 285, 446
Csp6I GTAC 2 cut(s) 304, 489
CviAII CATG 1 cut(s) 260
CviQI GTAC 2 cut(s) 304, 489
DdeI CTNAG 4 cut(s) 6, 30, 104, 485
DpnI GATC 3 cut(s) 109, 555, 713
DpnII GATC 3 cut(s) 107, 553, 711
EaeI YGGCCR 2 cut(s) 366, 618
EagI CGGCCG 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EciI GGCGGA 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 618
Eco130I CCWWGG 1 cut(s) 259
Eco31I GGTCTC 1 cut(s) 397
Eco52I CGGCCG 1 cut(s) 618
Eco57I CTGAAG 1 cut(s) 707
EcoO109I RGGNCCY 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 266
EcoRII CCWGG 3 cut(s) 285, 352, 446
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 61, 261, 412, 496, 515
FaqI GGGAC 2 cut(s) 19, 371
FatI CATG 1 cut(s) 259
FauI CCCGC 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 50, 342, 606, 609, 642, 698
Fsp4HI GCNGC 6 cut(s) 50, 342, 606, 609, 642, 698
GlaI GCGC 1 cut(s) 612
GluI GCNGC 6 cut(s) 50, 342, 606, 609, 642, 698
HaeIII GGCC 4 cut(s) 20, 368, 480, 620
HapII CCGG 3 cut(s) 369, 617, 638
HhaI GCGC 1 cut(s) 613
Hin1II CATG 1 cut(s) 263
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 2 cut(s) 32, 359
HpaII CCGG 3 cut(s) 369, 617, 638
HphI GGTGA 3 cut(s) 108, 627, 677
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 4 cut(s) 9, 107, 294, 542
Hpy188III TCNNGA 3 cut(s) 158, 271, 403
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 383, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 532, 617, 638, 668
HpyF3I CTNAG 4 cut(s) 6, 30, 104, 485
Hsp92II CATG 1 cut(s) 263
HspAI GCGC 1 cut(s) 611
Kzo9I GATC 3 cut(s) 107, 553, 711
LmnI GCTCC 1 cut(s) 213
Lsp1109I GCAGC 1 cut(s) 653
LweI GCATC 1 cut(s) 641
MabI ACCWGGT 2 cut(s) 285, 446
MaeIII GTNAC 1 cut(s) 497
MalI GATC 3 cut(s) 109, 555, 713
MboI GATC 3 cut(s) 107, 553, 711
MboII GAAGA 7 cut(s) 120, 123, 146, 162, 328, 657, 715
MflI RGATCY 1 cut(s) 553
MluCI AATT 5 cut(s) 88, 203, 266, 334, 678
MlyI GAGTC 2 cut(s) 41, 353
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 9 cut(s) 31, 130, 133, 209, 294, 474, 492, 536, 698
MspI CCGG 3 cut(s) 369, 617, 638
MspR9I CCNGG 3 cut(s) 287, 354, 448
Mva1269I GAATGC 1 cut(s) 572
MvaI CCWGG 3 cut(s) 287, 354, 448
MvnI CGCG 2 cut(s) 341, 611
MwoI GCNNNNNNNGC 4 cut(s) 532, 617, 638, 668
NcoI CCATGG 1 cut(s) 259
NdeII GATC 3 cut(s) 107, 553, 711
NlaIII CATG 1 cut(s) 263
NlaIV GGNNCC 1 cut(s) 452
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 1 cut(s) 497
PctI GAATGC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 217
PkrI GCNGC 6 cut(s) 51, 343, 607, 610, 643, 699
PleI GAGTC 2 cut(s) 40, 353
PpsI GAGTC 2 cut(s) 40, 353
Psp6I CCWGG 3 cut(s) 285, 352, 446
PspGI CCWGG 3 cut(s) 285, 352, 446
PspN4I GGNNCC 1 cut(s) 452
PspPI GGNCC 1 cut(s) 479
PstI CTGCAG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 2 cut(s) 305, 490
RsaNI GTAC 2 cut(s) 304, 489
SatI GCNGC 6 cut(s) 50, 342, 606, 609, 642, 698
Sau3AI GATC 3 cut(s) 107, 553, 711
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 2 cut(s) 41, 353
ScrFI CCNGG 3 cut(s) 287, 354, 448
SetI ASST 8 cut(s) 291, 305, 355, 449, 627, 646, 690, 752
SexAI ACCWGGT 2 cut(s) 285, 446
SfaNI GCATC 1 cut(s) 641
SfcI CTRYAG 1 cut(s) 430
Sse9I AATT 5 cut(s) 88, 203, 266, 334, 678
SsiI CCGC 9 cut(s) 24, 50, 183, 341, 344, 533, 606, 609, 698
StyD4I CCNGG 3 cut(s) 285, 352, 446
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 1 cut(s) 201
TasI AATT 5 cut(s) 88, 203, 266, 334, 678
TatI WGTACW 1 cut(s) 488
TauI GCSGC 5 cut(s) 52, 344, 608, 611, 700
TscAI CASTG 2 cut(s) 34, 222
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 497
TspRI CASTG 2 cut(s) 34, 222
Van91I CCANNNNNTGG 1 cut(s) 217
XapI RAATTY 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.