RchiOBHm_Chr6g0311911

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012514
Physical Location & Seq
Reverse (-)
68715045 .. 68716648
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28054

Sequence Viewer

Length: 762 bp
ATGGCTCAGAGCGAGTTGGCCTCCGCCACTGAGTCCCCAAAATCGTTGCCGCCCACCCCACATTTTACTCCATACTTCTCAATGCTACTCTCCCCAACCAATTTCGCACCATTTCTCAGATCATCCTCACCCTCCTCCTCATCTTGTTCCAAGAAGCCCAGTTTTGTTCTTCCCGATATTCAATCTTCCATCGCTTCCGCAACCCACAACTGCCTCGAATTGCTCCACTCACTGGCTTCGCAGAACCCTTTTCTCAACAAACTAATCTCCTTCCATGGCGAATTCCAGAGTTTCTGCCACCAGGTTCAGACTACGAGGTACAGGAAGTTGAAGAGTTTATCTACTCACAATTTCGCCGCGGTTTTACCCGGGGACTCGGTGGCCGGACTTGTCGTTGCAAATGGGGTCTCCAACTTCCTGAACTTATACAACACTCTATTGGTCTGCAGGCTTGTGTTGACCTGGTTCCCAAACTCCCCTCCTGCCATTGTCGGCCCTCTCAGTACAATATGTGACCCTTACTTGAACATATTTCGGGGGCTAATCCCGCCACTCGGAGGCACATTGGATCTCTCTCCCATTCTGGCATTCTTGGTTCTAAATGCCTTTACAAGCACAGCCGCCGCGCTACCGGCCGAGCTTCCAGCATCACCAGCAGCTTCCCAAGAACTCGGTGCTTCTTCTGCTACTGGAATTACTCACCTCACTACGCCGCAGAAGAAATGGATCACAAGGCTTCAGGGCAGCAACACAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

253

Amino Acids

27.0

Weight (kDa)

9.06

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 139 - 203 8.3e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 2 cut(s) 359, 626
AciI CCGC 9 cut(s) 24, 50, 198, 357, 359, 548, 621, 624, 713
AclWI GGATC 2 cut(s) 576, 734
AcoI YGGCCR 2 cut(s) 381, 633
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 722
AfaI GTAC 2 cut(s) 320, 505
AfiI CCNNNNNNNGG 3 cut(s) 232, 554, 557
AgsI TTSAA 3 cut(s) 182, 331, 526
AjnI CCWGG 2 cut(s) 300, 461
AluBI AGCT 3 cut(s) 640, 659, 759
AluI AGCT 3 cut(s) 640, 659, 759
Alw26I GTCTC 1 cut(s) 412
AlwI GGATC 2 cut(s) 576, 734
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 4 cut(s) 18, 381, 493, 633
ApeKI GCWGC 2 cut(s) 656, 744
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 2 cut(s) 369, 370
AsuHPI GGTGA 3 cut(s) 120, 642, 692
AvaI CYCGRG 1 cut(s) 368
BbvI GCAGC 2 cut(s) 668, 756
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 302, 463
BcnI CCSGG 2 cut(s) 369, 370
BcoDI GTCTC 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 7 cut(s) 50, 357, 621, 624, 657, 713, 745
BlsI GCNGC 7 cut(s) 51, 358, 622, 625, 658, 714, 746
Bme1390I CCNGG 4 cut(s) 302, 369, 370, 463
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 4 cut(s) 302, 369, 370, 463
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 153
BplI GAGNNNNNCTC 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 369, 370
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 4 cut(s) 274, 357, 368, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 554, 557
Bse118I RCCGGY 1 cut(s) 631
Bse1I ACTGG 3 cut(s) 159, 237, 694
BseBI CCWGG 2 cut(s) 302, 463
BseDI CCNNGG 4 cut(s) 274, 357, 368, 369
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 3 cut(s) 232, 554, 557
BseMII CTCAG 4 cut(s) 20, 21, 130, 514
BseNI ACTGG 3 cut(s) 159, 237, 694
BseRI GAGGAG 2 cut(s) 124, 127
BseX3I CGGCCG 1 cut(s) 633
BseXI GCAGC 2 cut(s) 668, 756
Bsh1236I CGCG 2 cut(s) 359, 626
Bsh1285I CGRYCG 1 cut(s) 636
BshFI GGCC 4 cut(s) 20, 383, 495, 635
BsiEI CGRYCG 1 cut(s) 636
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 3 cut(s) 369, 384, 632
BslFI GGGAC 2 cut(s) 19, 386
BslI CCNNNNNNNGG 3 cut(s) 232, 554, 557
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 2 cut(s) 19, 386
BsmI GAATGC 1 cut(s) 587
BsnI GGCC 4 cut(s) 20, 383, 495, 635
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 3 cut(s) 119, 568, 726
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 9 cut(s) 24, 50, 198, 357, 359, 548, 621, 624, 713
BspANI GGCC 4 cut(s) 20, 383, 495, 635
BspCNI CTCAG 4 cut(s) 19, 22, 129, 513
BspFNI CGCG 2 cut(s) 359, 626
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 449
BspPI GGATC 2 cut(s) 576, 734
BspTNI GGTCTC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 631
BsrI ACTGG 3 cut(s) 159, 237, 694
BssAI RCCGGY 1 cut(s) 631
BssECI CCNNGG 4 cut(s) 274, 357, 368, 369
BssMI GATC 3 cut(s) 119, 568, 726
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 302, 463
Bst6I CTCTTC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 4 cut(s) 6, 30, 116, 500
BstDSI CCRYGG 2 cut(s) 274, 357
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 2 cut(s) 359, 626
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 3 cut(s) 122, 571, 729
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 3 cut(s) 119, 568, 726
BstMCI CGRYCG 1 cut(s) 636
BstMWI GCNNNNNNNGC 4 cut(s) 547, 632, 653, 683
BstNI CCWGG 2 cut(s) 302, 463
BstSCI CCNGG 4 cut(s) 300, 367, 368, 461
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 2 cut(s) 359, 626
BstV1I GCAGC 2 cut(s) 668, 756
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BstZI CGGCCG 1 cut(s) 633
BsuRI GGCC 4 cut(s) 20, 383, 495, 635
BtgI CCRYGG 2 cut(s) 274, 357
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 27, 230
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 494
Cfr42I CCGCGG 1 cut(s) 360
Cfr9I CCCGGG 1 cut(s) 368
CsiI ACCWGGT 2 cut(s) 300, 461
Csp6I GTAC 2 cut(s) 319, 504
CviAII CATG 1 cut(s) 275
CviQI GTAC 2 cut(s) 319, 504
DdeI CTNAG 4 cut(s) 6, 30, 116, 500
DpnI GATC 3 cut(s) 121, 570, 728
DpnII GATC 3 cut(s) 119, 568, 726
EaeI YGGCCR 2 cut(s) 381, 633
EagI CGGCCG 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 412
Eco52I CGGCCG 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 300, 461
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 1 cut(s) 278
FaiI YATR 5 cut(s) 73, 276, 427, 511, 530
FaqI GGGAC 2 cut(s) 19, 386
FatI CATG 1 cut(s) 274
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 7 cut(s) 50, 357, 621, 624, 657, 713, 745
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 7 cut(s) 50, 357, 621, 624, 657, 713, 745
GlaI GCGC 1 cut(s) 627
GluI GCNGC 7 cut(s) 50, 357, 621, 624, 657, 713, 745
HaeIII GGCC 4 cut(s) 20, 383, 495, 635
HapII CCGG 3 cut(s) 369, 384, 632
HhaI GCGC 1 cut(s) 628
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 2 cut(s) 32, 374
HpaII CCGG 3 cut(s) 369, 384, 632
HphI GGTGA 3 cut(s) 120, 642, 692
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 4 cut(s) 9, 119, 309, 557
Hpy188III TCNNGA 3 cut(s) 173, 286, 418
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 398, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 547, 632, 653, 683
HpyF3I CTNAG 4 cut(s) 6, 30, 116, 500
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 1 cut(s) 626
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 3 cut(s) 119, 568, 726
LmnI GCTCC 1 cut(s) 228
Lsp1109I GCAGC 2 cut(s) 668, 756
LweI GCATC 1 cut(s) 656
MabI ACCWGGT 2 cut(s) 300, 461
MaeIII GTNAC 1 cut(s) 512
MalI GATC 3 cut(s) 121, 570, 728
MboI GATC 3 cut(s) 119, 568, 726
MboII GAAGA 5 cut(s) 161, 177, 343, 672, 730
MflI RGATCY 1 cut(s) 568
MluCI AATT 5 cut(s) 100, 218, 281, 349, 693
MlyI GAGTC 2 cut(s) 41, 368
MmeI TCCRAC 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 3 cut(s) 369, 384, 632
MspR9I CCNGG 4 cut(s) 302, 369, 370, 463
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 2 cut(s) 302, 463
MvnI CGCG 2 cut(s) 359, 626
MwoI GCNNNNNNNGC 4 cut(s) 547, 632, 653, 683
NciI CCSGG 2 cut(s) 369, 370
NcoI CCATGG 1 cut(s) 274
NdeII GATC 3 cut(s) 119, 568, 726
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 661
NmuCI GTSAC 1 cut(s) 512
PctI GAATGC 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 7 cut(s) 51, 358, 622, 625, 658, 714, 746
PleI GAGTC 2 cut(s) 40, 368
PpsI GAGTC 2 cut(s) 40, 368
Psp6I CCWGG 2 cut(s) 300, 461
PspGI CCWGG 2 cut(s) 300, 461
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 320, 505
RsaNI GTAC 2 cut(s) 319, 504
SacII CCGCGG 1 cut(s) 360
SatI GCNGC 7 cut(s) 50, 357, 621, 624, 657, 713, 745
Sau3AI GATC 3 cut(s) 119, 568, 726
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 41, 368
ScrFI CCNGG 4 cut(s) 302, 369, 370, 463
SetI ASST 7 cut(s) 306, 320, 464, 642, 661, 705, 761
SexAI ACCWGGT 2 cut(s) 300, 461
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SmaI CCCGGG 1 cut(s) 370
Sse9I AATT 5 cut(s) 100, 218, 281, 349, 693
SsiI CCGC 9 cut(s) 24, 50, 198, 357, 359, 548, 621, 624, 713
StyD4I CCNGG 4 cut(s) 300, 367, 368, 461
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 216
TasI AATT 5 cut(s) 100, 218, 281, 349, 693
TatI WGTACW 1 cut(s) 503
TauI GCSGC 5 cut(s) 52, 359, 623, 626, 715
TscAI CASTG 2 cut(s) 34, 237
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 2 cut(s) 656, 744
Tsp45I GTSAC 1 cut(s) 512
TspMI CCCGGG 1 cut(s) 368
TspRI CASTG 2 cut(s) 34, 237
Van91I CCANNNNNTGG 1 cut(s) 232
XapI RAATTY 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.