Rh6AG507700

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012514
Physical Location & Seq
Reverse (-)
67991362 .. 67992681
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG507700.1

Sequence Viewer

Length: 570 bp
ATGGCTCAGAGCGAGTTGGCCTCCGCCACTGAGTCCCCAAAATCGTTGCCGCCCACCCCACATTTTACTCCATACTTCTCAATGCTACTCTCCCCAACCAATTTCGCACCATTTCTCAGATCATCCTCACCCTCCTCCTCATCTTGTTCCAAGAAGCCCAGTTTTGTTCTTCCCGATATTCAATCTTCCATCGCTTCCGCAACCCACAACTGCCTCGAATTGCTCCACTCACTGGCTTCGCAGAACCCTTTTCTCAACAAACTAATCTCCTTCCATGGCGAATTCCAGAGTTTCTGCCACCAGGTTCAGACTACGAGGTACAGGAAGTTGAAGAGTTTATCTACTCACAATTTCGCCGCGGTTTTACCCGGGGACTCGGTGGCCGGACTTGTCGTTGCAAATGGGGTCTCCAACTTCCTGAACTTATACAACACTCTATTGGTCTGCAGGCTTGTGTTGACCTGGTTCCCAAACTCCCCTCCTGCCATTGTCGGCCCTCTCAGGTATTCTCAACCATTAATTCAACCTACTTACTGGTTCGGCAACATAACATGTCAGATTATCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

189

Amino Acids

20.75

Weight (kDa)

9.1

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 1 cut(s) 359
AciI CCGC 5 cut(s) 24, 50, 198, 357, 359
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 551
AgsI TTSAA 3 cut(s) 182, 331, 524
AjnI CCWGG 2 cut(s) 300, 461
Alw26I GTCTC 1 cut(s) 412
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 3 cut(s) 18, 381, 493
ApoI RAATTY 1 cut(s) 281
AseI ATTAAT 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 2 cut(s) 369, 370
AsuHPI GGTGA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 368
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 302, 463
BcnI CCSGG 2 cut(s) 369, 370
BcoDI GTCTC 1 cut(s) 412
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 2 cut(s) 50, 357
BlsI GCNGC 2 cut(s) 51, 358
Bme1390I CCNGG 4 cut(s) 302, 369, 370, 463
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 4 cut(s) 302, 369, 370, 463
BmrI ACTGGG 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 153
BplI GAGNNNNNCTC 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 369, 370
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 4 cut(s) 274, 357, 368, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 159, 237, 539
BseBI CCWGG 2 cut(s) 302, 463
BseDI CCNNGG 4 cut(s) 274, 357, 368, 369
BseGI GGATG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 4 cut(s) 20, 21, 130, 514
BseNI ACTGG 3 cut(s) 159, 237, 539
BseRI GAGGAG 2 cut(s) 124, 127
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 3 cut(s) 20, 383, 495
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 369, 384
BslFI GGGAC 2 cut(s) 19, 386
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 412
BsmFI GGGAC 2 cut(s) 19, 386
BsnI GGCC 3 cut(s) 20, 383, 495
Bso31I GGTCTC 1 cut(s) 412
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 274
BspACI CCGC 5 cut(s) 24, 50, 198, 357, 359
BspANI GGCC 3 cut(s) 20, 383, 495
BspCNI CTCAG 4 cut(s) 19, 22, 129, 513
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 3 cut(s) 159, 237, 539
BssECI CCNNGG 4 cut(s) 274, 357, 368, 369
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 302, 463
Bst6I CTCTTC 1 cut(s) 326
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 4 cut(s) 6, 30, 116, 500
BstDSI CCRYGG 2 cut(s) 274, 357
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 412
BstMBI GATC 1 cut(s) 119
BstNI CCWGG 2 cut(s) 302, 463
BstNSI RCATGY 1 cut(s) 555
BstSCI CCNGG 4 cut(s) 300, 367, 368, 461
BstSFI CTRYAG 1 cut(s) 445
BstUI CGCG 1 cut(s) 359
BsuRI GGCC 3 cut(s) 20, 383, 495
BtgI CCRYGG 2 cut(s) 274, 357
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 27, 230
Cac8I GCNNGC 1 cut(s) 449
Cfr13I GGNCC 1 cut(s) 494
Cfr42I CCGCGG 1 cut(s) 360
Cfr9I CCCGGG 1 cut(s) 368
CsiI ACCWGGT 2 cut(s) 300, 461
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 275, 552
CviJI RGCY 7 cut(s) 5, 20, 157, 236, 383, 451, 495
CviKI_1 RGCY 7 cut(s) 5, 20, 157, 236, 383, 451, 495
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 6, 30, 116, 500
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 412
Eco88I CYCGRG 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 300, 461
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 2 cut(s) 278, 555
FaiI YATR 5 cut(s) 73, 276, 427, 548, 553
FaqI GGGAC 2 cut(s) 19, 386
FatI CATG 2 cut(s) 274, 551
Fnu4HI GCNGC 2 cut(s) 50, 357
FokI GGATG 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 50, 357
GluI GCNGC 2 cut(s) 50, 357
HaeIII GGCC 3 cut(s) 20, 383, 495
HapII CCGG 2 cut(s) 369, 384
Hin1II CATG 2 cut(s) 278, 555
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 2 cut(s) 32, 374
HpaII CCGG 2 cut(s) 369, 384
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 4 cut(s) 9, 119, 309, 558
Hpy188III TCNNGA 3 cut(s) 173, 286, 418
Hpy8I GTNNAC 1 cut(s) 459
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 398, 447
HpyF3I CTNAG 4 cut(s) 6, 30, 116, 500
Hsp92II CATG 2 cut(s) 278, 555
KspI CCGCGG 1 cut(s) 360
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 228
MabI ACCWGGT 2 cut(s) 300, 461
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 3 cut(s) 161, 177, 343
MluCI AATT 5 cut(s) 100, 218, 281, 349, 519
MlyI GAGTC 2 cut(s) 41, 368
MmeI TCCRAC 1 cut(s) 435
MnlI CCTC 9 cut(s) 31, 136, 142, 145, 148, 224, 309, 489, 507
MseI TTAA 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 369, 384
MspR9I CCNGG 4 cut(s) 302, 369, 370, 463
MvaI CCWGG 2 cut(s) 302, 463
MvnI CGCG 1 cut(s) 359
NciI CCSGG 2 cut(s) 369, 370
NcoI CCATGG 1 cut(s) 274
NdeII GATC 1 cut(s) 119
NlaIII CATG 2 cut(s) 278, 555
NlaIV GGNNCC 1 cut(s) 467
NspI RCATGY 1 cut(s) 555
PciI ACATGT 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 2 cut(s) 51, 358
PleI GAGTC 2 cut(s) 40, 368
PpsI GAGTC 2 cut(s) 40, 368
PscI ACATGT 1 cut(s) 551
PshBI ATTAAT 1 cut(s) 518
Psp6I CCWGG 2 cut(s) 300, 461
PspGI CCWGG 2 cut(s) 300, 461
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 1 cut(s) 449
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SacII CCGCGG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 2 cut(s) 50, 357
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 41, 368
ScrFI CCNGG 4 cut(s) 302, 369, 370, 463
SetI ASST 5 cut(s) 306, 320, 464, 506, 529
SexAI ACCWGGT 2 cut(s) 300, 461
SfcI CTRYAG 1 cut(s) 445
Sfr303I CCGCGG 1 cut(s) 360
SgrBI CCGCGG 1 cut(s) 360
SmaI CCCGGG 1 cut(s) 370
Sse9I AATT 5 cut(s) 100, 218, 281, 349, 519
SsiI CCGC 5 cut(s) 24, 50, 198, 357, 359
StyD4I CCNGG 4 cut(s) 300, 367, 368, 461
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 216
TasI AATT 5 cut(s) 100, 218, 281, 349, 519
TauI GCSGC 2 cut(s) 52, 359
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 2 cut(s) 34, 237
TspMI CCCGGG 1 cut(s) 368
TspRI CASTG 2 cut(s) 34, 237
Van91I CCANNNNNTGG 1 cut(s) 232
VspI ATTAAT 1 cut(s) 518
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 555
XmaI CCCGGG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.