Rroxscaffold_7G00157230

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012514
Physical Location & Seq
Forward (+)
1006913 .. 1008372
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157230.1

Sequence Viewer

Length: 759 bp
ATGGCTCAGAGCGAGTTGGCCTCCGCCACTGAGTCCCCAAAATCATTGCCGCCCACTCCACATTTTACTCCATACTTCTCAATGCTACTCTCCCCAACCAATTTCGCACCATTTCTCAGATCATCATCACCCTCCTCATCTTCTTCCAAGAAGCCTAGTTTTGTTCTTCCCGATATTCAATATTCCATCGCTTCCGCAACCCACAACTGCCTCGAATTGCTCCACTCACTGGCTTCGCAGAACCCTTTTCTCAACAAACTAATCTCCTTCCACGGCGAATTCCAGAGTTTCTGCCACCAGGTTCAGACACCGAGGTACAGGAAGTTGAAGAGTTTATCTACTCACAATTTCGCGGCGGTTTTACCTGGGGACTCGGTGGCCGGACTTGTCGTTGCAAATGGGGTCTCCAACTTCTTGAACTTATACAACACTCTATTGGTCTGCAGGCTTGTGTTGACCTGGTTCCCAAACTCCCCTCCTGCCATTGTCGGCCCTCTCAGTACAATATGTGACCCTTACTTGAACATATTTCGGGGGCTAATCCCGCCACTCGGAGGCACATTGGATCTCTCTCCCATTCTGGCATTCTTGGTTCTAAATGCCTTTACAAGCACAGCTGCCGCTCTACCGGCCGAGCTTCCAGCATCACCGGCAGCTTCCCAAGAACTCGGTGCTTCTTCTGCTACTGGAATTACTCACCTCACTACGCCGCAGAAGAAATGGATCACAAGGCTTCAGGGCAGCAACACAAGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

252

Amino Acids

26.99

Weight (kDa)

9.16

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 138 - 202 8.2e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 229
AccBSI CCGCTC 1 cut(s) 623
AccII CGCG 1 cut(s) 353
AciI CCGC 8 cut(s) 24, 50, 195, 353, 356, 545, 621, 710
AclWI GGATC 2 cut(s) 573, 731
AcoI YGGCCR 2 cut(s) 378, 630
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 719
AfaI GTAC 2 cut(s) 317, 502
AfiI CCNNNNNNNGG 3 cut(s) 229, 551, 554
AgsI TTSAA 4 cut(s) 179, 328, 418, 523
AjnI CCWGG 3 cut(s) 297, 364, 458
AluBI AGCT 4 cut(s) 617, 637, 656, 756
AluI AGCT 4 cut(s) 617, 637, 656, 756
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 573, 731
AoxI GGCC 4 cut(s) 18, 378, 490, 630
ApeKI GCWGC 3 cut(s) 617, 653, 741
ApoI RAATTY 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 3 cut(s) 120, 639, 689
BbvI GCAGC 3 cut(s) 604, 665, 753
BccI CCATC 1 cut(s) 194
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 3 cut(s) 299, 366, 460
BcoDI GTCTC 1 cut(s) 409
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 442
BisI GCNGC 7 cut(s) 50, 354, 618, 621, 654, 710, 742
BlsI GCNGC 7 cut(s) 51, 355, 619, 622, 655, 711, 743
Bme1390I CCNGG 3 cut(s) 299, 366, 460
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 3 cut(s) 299, 366, 460
BmsI GCATC 1 cut(s) 653
BplI GAGNNNNNCTC 1 cut(s) 37
BsaBI GATNNNNATC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 409
BsaJI CCNNGG 3 cut(s) 271, 311, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 551, 554
Bse118I RCCGGY 2 cut(s) 628, 649
Bse1I ACTGG 2 cut(s) 234, 691
Bse3DI GCAATG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 3 cut(s) 299, 366, 460
BseDI CCNNGG 3 cut(s) 271, 311, 365
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 229, 551, 554
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 4 cut(s) 20, 21, 130, 511
BseNI ACTGG 2 cut(s) 234, 691
BseRI GAGGAG 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 630
BseXI GCAGC 3 cut(s) 604, 665, 753
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 633
BshFI GGCC 4 cut(s) 20, 380, 492, 632
BsiEI CGRYCG 1 cut(s) 633
BsiSI CCGG 3 cut(s) 381, 629, 650
BslFI GGGAC 2 cut(s) 19, 383
BslI CCNNNNNNNGG 3 cut(s) 229, 551, 554
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 2 cut(s) 19, 383
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 4 cut(s) 20, 380, 492, 632
Bso31I GGTCTC 1 cut(s) 409
Bsp143I GATC 3 cut(s) 119, 565, 723
BspACI CCGC 8 cut(s) 24, 50, 195, 353, 356, 545, 621, 710
BspANI GGCC 4 cut(s) 20, 380, 492, 632
BspCNI CTCAG 4 cut(s) 19, 22, 129, 510
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 446
BspPI GGATC 2 cut(s) 573, 731
BspTNI GGTCTC 1 cut(s) 409
BsrBI CCGCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 628, 649
BsrI ACTGG 2 cut(s) 234, 691
BssAI RCCGGY 2 cut(s) 628, 649
BssECI CCNNGG 3 cut(s) 271, 311, 365
BssMI GATC 3 cut(s) 119, 565, 723
Bst2UI CCWGG 3 cut(s) 299, 366, 460
Bst6I CTCTTC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 4 cut(s) 6, 30, 116, 497
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 3 cut(s) 122, 568, 726
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 119, 565, 723
BstMCI CGRYCG 1 cut(s) 633
BstMWI GCNNNNNNNGC 4 cut(s) 544, 629, 650, 680
BstNI CCWGG 3 cut(s) 299, 366, 460
BstSCI CCNGG 3 cut(s) 297, 364, 458
BstSFI CTRYAG 1 cut(s) 442
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 604, 665, 753
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BstZI CGGCCG 1 cut(s) 630
BsuRI GGCC 4 cut(s) 20, 380, 492, 632
BtgI CCRYGG 1 cut(s) 271
BtgZI GCGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 27, 227
Cac8I GCNNGC 1 cut(s) 446
Cfr10I RCCGGY 2 cut(s) 628, 649
Cfr13I GGNCC 1 cut(s) 491
CsiI ACCWGGT 2 cut(s) 297, 458
Csp6I GTAC 2 cut(s) 316, 501
CviQI GTAC 2 cut(s) 316, 501
DdeI CTNAG 4 cut(s) 6, 30, 116, 497
DpnI GATC 3 cut(s) 121, 567, 725
DpnII GATC 3 cut(s) 119, 565, 723
EaeI YGGCCR 2 cut(s) 378, 630
EagI CGGCCG 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 13
EclXI CGGCCG 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 409
Eco52I CGGCCG 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 297, 364, 458
FaiI YATR 4 cut(s) 73, 424, 508, 527
FaqI GGGAC 2 cut(s) 19, 383
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 7 cut(s) 50, 354, 618, 621, 654, 710, 742
Fsp4HI GCNGC 7 cut(s) 50, 354, 618, 621, 654, 710, 742
FspBI CTAG 1 cut(s) 156
GluI GCNGC 7 cut(s) 50, 354, 618, 621, 654, 710, 742
HaeIII GGCC 4 cut(s) 20, 380, 492, 632
HapII CCGG 3 cut(s) 381, 629, 650
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HinfI GANTC 2 cut(s) 32, 371
HpaII CCGG 3 cut(s) 381, 629, 650
HphI GGTGA 3 cut(s) 120, 639, 689
Hpy166II GTNNAC 1 cut(s) 456
Hpy188I TCNGA 4 cut(s) 9, 119, 306, 554
Hpy188III TCNNGA 3 cut(s) 170, 283, 415
Hpy8I GTNNAC 1 cut(s) 456
HpyAV CCTTC 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 395, 444
HpyF10VI GCNNNNNNNGC 4 cut(s) 544, 629, 650, 680
HpyF3I CTNAG 4 cut(s) 6, 30, 116, 497
Kzo9I GATC 3 cut(s) 119, 565, 723
LmnI GCTCC 2 cut(s) 225, 753
Lsp1109I GCAGC 3 cut(s) 604, 665, 753
LweI GCATC 1 cut(s) 653
MabI ACCWGGT 2 cut(s) 297, 458
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 509
MalI GATC 3 cut(s) 121, 567, 725
MbiI CCGCTC 1 cut(s) 623
MboI GATC 3 cut(s) 119, 565, 723
MboII GAAGA 6 cut(s) 132, 135, 158, 340, 669, 727
MflI RGATCY 1 cut(s) 565
MluCI AATT 5 cut(s) 100, 215, 278, 346, 690
MlyI GAGTC 2 cut(s) 41, 365
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 9 cut(s) 31, 142, 145, 221, 306, 486, 504, 548, 710
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 3 cut(s) 381, 629, 650
MspR9I CCNGG 3 cut(s) 299, 366, 460
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 3 cut(s) 299, 366, 460
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 4 cut(s) 544, 629, 650, 680
NdeII GATC 3 cut(s) 119, 565, 723
NlaIV GGNNCC 1 cut(s) 464
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 1 cut(s) 509
PctI GAATGC 1 cut(s) 584
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 7 cut(s) 51, 355, 619, 622, 655, 711, 743
PleI GAGTC 2 cut(s) 40, 365
PpsI GAGTC 2 cut(s) 40, 365
Psp6I CCWGG 3 cut(s) 297, 364, 458
PspGI CCWGG 3 cut(s) 297, 364, 458
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 317, 502
RsaNI GTAC 2 cut(s) 316, 501
SatI GCNGC 7 cut(s) 50, 354, 618, 621, 654, 710, 742
Sau3AI GATC 3 cut(s) 119, 565, 723
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 41, 365
ScrFI CCNGG 3 cut(s) 299, 366, 460
SetI ASST 9 cut(s) 303, 317, 367, 461, 619, 639, 658, 702, 758
SexAI ACCWGGT 2 cut(s) 297, 458
SfaNI GCATC 1 cut(s) 653
SfcI CTRYAG 1 cut(s) 442
Sse9I AATT 5 cut(s) 100, 215, 278, 346, 690
SsiI CCGC 8 cut(s) 24, 50, 195, 353, 356, 545, 621, 710
SspI AATATT 1 cut(s) 182
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 297, 364, 458
TaqI TCGA 1 cut(s) 213
TasI AATT 5 cut(s) 100, 215, 278, 346, 690
TatI WGTACW 1 cut(s) 500
TauI GCSGC 4 cut(s) 52, 356, 623, 712
TscAI CASTG 2 cut(s) 34, 234
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 3 cut(s) 617, 653, 741
Tsp45I GTSAC 1 cut(s) 509
TspRI CASTG 2 cut(s) 34, 234
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 278
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.