FvH4_2g30940

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012514
Physical Location & Seq
Forward (+)
23846733 .. 23848209
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30940.t1

Sequence Viewer

Length: 738 bp
ATGGCTCAGACCGAGTCGGCCTCGGCCTCCGAGACTCCAAAACCACTGCTACCCGCTCCACATTTCACTCCAAACTTCTCAATGCTACTCTCCCCAACCAACTTCGCACCATTCCTGAGATCACCATCACCGTCTCACAAGAAGCCCACTTTCGTTCTCCCCGATATTCACTCCTCAATCGCTTCCGCAACCGAATTGCTACACTCGCTCGCTTCACGAAACCCGTTTCTCAACAAACTCTTCTCCTTCCATGCCGAATTCCGGACTTTCTGCCACCAGGTTCAGAGCACGAGGCAGAACAAGTTGAAGAGCTTATCTACTCACAATTTCGCGGCGGTTTTGCCCGGAGATTCGGTCGCCGGACTTGTAGTTGCAAATGGCGTCTCCAACTTCTTGAACTTGTACAACACTCTGTTGGTCTGCAGGCTTGTGCTGACCTGGTTCCCTAACTCCCCTCCTGCCATTGTAGGCCCTCTCAGCACAATATGTGACCCTTACTTGAACATATTTCGAGGACTAATCCCGCCACTCGGGGGCACATTGGACCTCTCTCCCATTCTGGCATTCTTGGTTCTAAATGCCTTTACGAGCACAGCTGCCGCGCTACCGGCTGAGCTTCCAGCATCATCGGCAGCTTCCCAAGAACTCGGTGCGTCTTCTACACCAGGAATTACTCAACTCACCACGCTGCAGAAGAAATGGATGACTAGGCTTCAGGGCAGCAACACAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YGGT

Protein Analysis

246

Amino Acids

26.25

Weight (kDa)

9.51

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 131 - 195 7.8e-16 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012514)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G21920 AT5G21920
fragaria_vesca FvH4_2g30940 FvH4_2g30940
malus_domestica MD15G1049500.v1.1
prunus_persica Prupe.1G403800_v2.0.a1
pyrus_communis pycom08g05960 pycom15g04830
rosa_chinensis RchiOBHm_Chr6g0311911
rosa_laevigata RLG00000010369
rosa_multiflora Rmu_sc0021201.1_g000002 Rmu_ssc0000057.1_g000003
rosa_roxburghii Rroxscaffold_7G00157230
rosa_rugosa Rorug06G0391300
rosa_samantha Rh6AG507700 Rh6BG518900 Rh6CG524600 Rh6DG510200
rosa_wichuraiana Rw6G044190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccII CGCG 2 cut(s) 332, 602
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 6 cut(s) 54, 186, 332, 335, 524, 600
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 3 cut(s) 261, 530, 533
AgsI TTSAA 3 cut(s) 307, 397, 502
AjnI CCWGG 3 cut(s) 276, 437, 664
AluBI AGCT 5 cut(s) 312, 596, 616, 635, 735
AluI AGCT 5 cut(s) 312, 596, 616, 635, 735
Alw21I GWGCWC 2 cut(s) 290, 593
Alw26I GTCTC 3 cut(s) 26, 138, 388
Ama87I CYCGRG 1 cut(s) 530
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 3 cut(s) 18, 24, 469
ApeKI GCWGC 4 cut(s) 596, 632, 688, 720
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 2 cut(s) 470, 544
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 3 cut(s) 114, 120, 673
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 539
BauI CACGAG 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 2 cut(s) 290, 593
BbvI GCAGC 4 cut(s) 583, 644, 675, 732
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 3 cut(s) 278, 439, 666
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 26, 138, 388
BfaI CTAG 1 cut(s) 708
BfmI CTRYAG 2 cut(s) 421, 689
BisI GCNGC 6 cut(s) 333, 597, 600, 633, 689, 721
BlpI GCTNAGC 1 cut(s) 612
BlsI GCNGC 6 cut(s) 334, 598, 601, 634, 690, 722
Bme1390I CCNGG 4 cut(s) 278, 345, 439, 666
Bme18I GGWCC 1 cut(s) 544
BmeT110I CYCGRG 1 cut(s) 530
BmgT120I GGNCC 2 cut(s) 470, 544
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 4 cut(s) 278, 345, 439, 666
BmsI GCATC 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 1 cut(s) 37
Bpu1102I GCTNAGC 1 cut(s) 612
BpuMI CCSGG 1 cut(s) 345
BsaBI GATNNNNATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 261, 530, 533
Bse118I RCCGGY 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 124
BseAI TCCGGA 1 cut(s) 261
BseBI CCWGG 3 cut(s) 278, 439, 666
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 708
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 261, 530, 533
BseMII CTCAG 4 cut(s) 20, 107, 490, 603
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 4 cut(s) 583, 644, 675, 732
Bsh1236I CGCG 2 cut(s) 332, 602
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 3 cut(s) 20, 26, 471
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 290, 593
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 4 cut(s) 262, 345, 360, 608
BslI CCNNNNNNNGG 3 cut(s) 261, 530, 533
BsmAI GTCTC 3 cut(s) 26, 138, 388
BsmBI CGTCTC 2 cut(s) 138, 388
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 20, 26, 471
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 290, 539, 593
Bsp13I TCCGGA 1 cut(s) 261
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 1 cut(s) 119
Bsp1720I GCTNAGC 1 cut(s) 612
BspACI CCGC 6 cut(s) 54, 186, 332, 335, 524, 600
BspANI GGCC 3 cut(s) 20, 26, 471
BspCNI CTCAG 4 cut(s) 19, 108, 489, 604
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 2 cut(s) 332, 602
BspLI GGNNCC 1 cut(s) 443
BspMAI CTGCAG 2 cut(s) 425, 693
BspQI GCTCTTC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 56
BsrFI RCCGGY 1 cut(s) 607
BsrGI TGTACA 1 cut(s) 402
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 119
BssNI GRCGYC 1 cut(s) 381
BssSI CACGAG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 3 cut(s) 278, 439, 666
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 245, 302
BstACI GRCGYC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 210, 425
BstDEI CTNAG 4 cut(s) 6, 116, 476, 612
BstF5I GGATG 1 cut(s) 708
BstFNI CGCG 2 cut(s) 332, 602
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 1 cut(s) 122
BstMAI GTCTC 3 cut(s) 26, 138, 388
BstMBI GATC 1 cut(s) 119
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 4 cut(s) 205, 477, 608, 629
BstNI CCWGG 3 cut(s) 278, 439, 666
BstSCI CCNGG 4 cut(s) 276, 343, 437, 664
BstSFI CTRYAG 2 cut(s) 421, 689
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 2 cut(s) 332, 602
BstV1I GCAGC 4 cut(s) 583, 644, 675, 732
BstV2I GAAGAC 1 cut(s) 648
BsuRI GGCC 3 cut(s) 20, 26, 471
BtsCI GGATG 1 cut(s) 708
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 210, 425
CfoI GCGC 1 cut(s) 604
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 2 cut(s) 470, 544
CseI GACGC 2 cut(s) 370, 642
CsiI ACCWGGT 2 cut(s) 276, 437
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 251
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 6, 116, 476, 612
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 245, 302
EarI CTCTTC 2 cut(s) 245, 302
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 257
EcoRII CCWGG 3 cut(s) 276, 437, 664
Esp3I CGTCTC 2 cut(s) 138, 388
FaeI CATG 1 cut(s) 254
FaiI YATR 3 cut(s) 252, 487, 506
FatI CATG 1 cut(s) 250
FauI CCCGC 2 cut(s) 61, 531
Fnu4HI GCNGC 6 cut(s) 333, 597, 600, 633, 689, 721
FokI GGATG 1 cut(s) 715
Fsp4HI GCNGC 6 cut(s) 333, 597, 600, 633, 689, 721
FspBI CTAG 1 cut(s) 708
GlaI GCGC 1 cut(s) 603
GluI GCNGC 6 cut(s) 333, 597, 600, 633, 689, 721
HaeIII GGCC 3 cut(s) 20, 26, 471
HapII CCGG 4 cut(s) 262, 345, 360, 608
HgaI GACGC 2 cut(s) 370, 642
HhaI GCGC 1 cut(s) 604
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 3 cut(s) 14, 34, 350
HpaII CCGG 4 cut(s) 262, 345, 360, 608
HphI GGTGA 3 cut(s) 114, 120, 673
Hpy188I TCNGA 3 cut(s) 9, 31, 285
Hpy188III TCNNGA 4 cut(s) 115, 216, 262, 394
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 374, 423, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 205, 477, 608, 629
HpyF3I CTNAG 4 cut(s) 6, 116, 476, 612
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 602
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 1 cut(s) 119
LguI GCTCTTC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 4 cut(s) 583, 644, 675, 732
LweI GCATC 1 cut(s) 632
MabI ACCWGGT 2 cut(s) 276, 437
MaeI CTAG 1 cut(s) 708
MaeIII GTNAC 1 cut(s) 488
MalI GATC 1 cut(s) 121
MbiI CCGCTC 1 cut(s) 56
MboI GATC 1 cut(s) 119
MboII GAAGA 4 cut(s) 232, 319, 648, 706
MhlI GDGCHC 3 cut(s) 290, 539, 593
MluCI AATT 4 cut(s) 194, 257, 325, 669
MlyI GAGTC 2 cut(s) 23, 28
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 8 cut(s) 31, 37, 184, 285, 465, 483, 506, 557
MroI TCCGGA 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 4 cut(s) 262, 345, 360, 608
MspR9I CCNGG 4 cut(s) 278, 345, 439, 666
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 3 cut(s) 278, 439, 666
MvnI CGCG 2 cut(s) 332, 602
MwoI GCNNNNNNNGC 4 cut(s) 205, 477, 608, 629
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 1 cut(s) 350
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 6 cut(s) 334, 598, 601, 634, 690, 722
PleI GAGTC 2 cut(s) 22, 28
PpsI GAGTC 2 cut(s) 22, 28
Psp6I CCWGG 3 cut(s) 276, 437, 664
PspGI CCWGG 3 cut(s) 276, 437, 664
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 2 cut(s) 470, 544
PstI CTGCAG 2 cut(s) 425, 693
PsyI GACNNNGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 302
SatI GCNGC 6 cut(s) 333, 597, 600, 633, 689, 721
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 2 cut(s) 470, 544
SchI GAGTC 2 cut(s) 23, 28
ScrFI CCNGG 4 cut(s) 278, 345, 439, 666
SduI GDGCHC 3 cut(s) 290, 539, 593
SetI ASST 8 cut(s) 282, 314, 440, 549, 598, 618, 637, 737
SexAI ACCWGGT 2 cut(s) 276, 437
SfaNI GCATC 1 cut(s) 632
SfcI CTRYAG 2 cut(s) 421, 689
SinI GGWCC 1 cut(s) 544
Sse9I AATT 4 cut(s) 194, 257, 325, 669
SsiI CCGC 6 cut(s) 54, 186, 332, 335, 524, 600
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 4 cut(s) 276, 343, 437, 664
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 511
TaqII GACCGA 2 cut(s) 26, 343
TasI AATT 4 cut(s) 194, 257, 325, 669
TatI WGTACW 1 cut(s) 402
TauI GCSGC 2 cut(s) 335, 602
TfiI GAWTC 1 cut(s) 350
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 4 cut(s) 596, 632, 688, 720
Tsp45I GTSAC 1 cut(s) 488
TspRI CASTG 1 cut(s) 51
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 1 cut(s) 257
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.