Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

7310171 .. 7313780

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGGAGAGGTGAAAGTAGACGACGATGCGATTCTTAAATCCTTCCTCGCCGAGGTCGGAGAAGTTGAGAGAGATAACGAAGTCGGCAGGATTCTCTCATGCTTCAAGCTGAATCCGTTTGAGCATCTTAACCTCTCTTTCGATTCTTCCACGGATGATGTTAAAAGGCAGTACAGAAAGATTTCTTTGATGGTTCATCCTGATAAATGCAAACATCCACAAGCACAGGAGGCTTTCGGAGCATTGGCAAAAGCGCAACAACTGCTGCTAAACGACCAAGAAAGAGATTATATTCTTACCCAAGTCCATGCTGCAAAAGAAGAGCTTAAGATGAAGAGAAAGAAACAGTTAAAGAAAGACACCGCCTCTAAAATAAAGTCCTTGGTTGATGAGGGAAAGCATGAGCACATATATGAGCAATCTGAGGAGTTTCAGAAGGAGCTCAAGTTAAAGGTCCGAGAGATATTAACAGACCAAGAGTGGCGTAGAAGAAAAATGGCAATGAGAATATCAGAAGAAGAGGGGAGACTGAAGAAGGATGAAGCAGAACAAAAGGAGATATGGAAGAAAAAGCGTGAGCATGAAGAACAGTGGGAAGGAACAAGAGAAAAAAGGGTATCAAGCTGGAGAGACTTTCAGAAAGCAGGAAAGAAGGCCAAAAAAGGAGAGACGCGACCTCCAAAATTGAAGACAGAGGATCCGAACAAATCATACGTCCAAAGGCCGGTCAAGAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

246

Amino Acids

29.07

Weight (kDa)

9.33

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	39 - 95	1.8e-13	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	673
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	2 cut(s)	692, 705
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	52, 724
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	106, 688
AluBI	AGCT	4 cut(s)	109, 325, 442, 624
AluI	AGCT	4 cut(s)	109, 325, 442, 624
Alw21I	GWGCWC	2 cut(s)	408, 444
Alw26I	GTCTC	3 cut(s)	520, 624, 662
AlwI	GGATC	2 cut(s)	692, 705
AoxI	GGCC	2 cut(s)	654, 722
ApeKI	GCWGC	2 cut(s)	265, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	699, 731
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	454
BamHI	GGATCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	2 cut(s)	408, 444
BbvI	GCAGC	2 cut(s)	252, 298
BccI	CCATC	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	520, 624, 662
BfrI	CTTAAG	1 cut(s)	326
BisI	GCNGC	2 cut(s)	266, 312
BlsI	GCNGC	2 cut(s)	267, 313
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	699
BmsI	GCATC	2 cut(s)	16, 133
BpiI	GAAGAC	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	51, 150, 381
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 661, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 724
Bse118I	RCCGGY	1 cut(s)	724
Bse3DI	GCAATG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	51, 150, 381
BseGI	GGATG	4 cut(s)	160, 196, 214, 544
BseLI	CCNNNNNNNGG	2 cut(s)	52, 724
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	252, 298
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	2 cut(s)	656, 724
BsiHKAI	GWGCWC	2 cut(s)	408, 444
BsiSI	CCGG	1 cut(s)	725
BslI	CCNNNNNNNGG	2 cut(s)	52, 724
BsmAI	GTCTC	3 cut(s)	520, 624, 662
BsmBI	CGTCTC	1 cut(s)	662
BsnI	GGCC	2 cut(s)	656, 724
Bsp1286I	GDGCHC	2 cut(s)	408, 444
Bsp143I	GATC	1 cut(s)	697
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	656, 724
BspCNI	CTCAG	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	692, 705
BspQI	GCTCTTC	1 cut(s)	315
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	51, 150, 381
BssMI	GATC	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	348, 591
Bst6I	CTCTTC	3 cut(s)	315, 329, 513
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstDEI	CTNAG	1 cut(s)	423
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	4 cut(s)	160, 196, 214, 544
BstFNI	CGCG	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	700
BstMAI	GTCTC	3 cut(s)	520, 624, 662
BstMBI	GATC	1 cut(s)	697
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 239, 262
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	252, 298
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	656, 724
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	160, 196, 214, 544
BtsIMutI	CAGTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	99, 308, 401, 581
CviJI	RGCY	8 cut(s)	109, 233, 325, 442, 624, 656, 724, 738
CviKI_1	RGCY	8 cut(s)	109, 233, 325, 442, 624, 656, 724, 738
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	699
DpnII	GATC	1 cut(s)	697
Eam1104I	CTCTTC	3 cut(s)	315, 329, 513
EarI	CTCTTC	3 cut(s)	315, 329, 513
Ecl136II	GAGCTC	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	442
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	4 cut(s)	102, 311, 404, 584
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	4 cut(s)	98, 307, 400, 580
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	266, 312
FokI	GGATG	4 cut(s)	167, 183, 201, 551
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	2 cut(s)	266, 312
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	266, 312
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	656, 724
HapII	CCGG	1 cut(s)	725
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	256
Hin1II	CATG	4 cut(s)	102, 311, 404, 584
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	4 cut(s)	31, 91, 112, 143
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	8 cut(s)	59, 239, 424, 435, 458, 514, 639, 702
Hpy188III	TCNNGA	2 cut(s)	200, 730
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	52, 430, 529, 590, 646
HpyCH4III	ACNGT	2 cut(s)	348, 591
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	2 cut(s)	210, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 239, 262
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	102, 311, 404, 584
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	697
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	239, 439
LpnPI	CCDG	5 cut(s)	73, 212, 213, 610, 630
Lsp1109I	GCAGC	2 cut(s)	252, 298
LweI	GCATC	2 cut(s)	16, 133
MaeII	ACGT	1 cut(s)	714
MalI	GATC	1 cut(s)	699
MboI	GATC	1 cut(s)	697
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	2 cut(s)	408, 444
MluCI	AATT	1 cut(s)	683
MmeI	TCCRAC	1 cut(s)	37
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	7 cut(s)	36, 129, 162, 327, 350, 449, 467
MslI	CAYNNNNRTG	1 cut(s)	411
MspCI	CTTAAG	1 cut(s)	326
MspI	CCGG	1 cut(s)	725
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	3 cut(s)	230, 239, 262
NdeII	GATC	1 cut(s)	697
NlaIII	CATG	4 cut(s)	102, 311, 404, 584
NlaIV	GGNNCC	1 cut(s)	699
NmeAIII	GCCGAG	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	181
PfeI	GAWTC	4 cut(s)	31, 91, 112, 143
PkrI	GCNGC	2 cut(s)	267, 313
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	1 cut(s)	454
PsrI	GAACNNNNNNTAC	2 cut(s)	695, 727
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	7 cut(s)	36, 129, 162, 327, 350, 449, 467
SatI	GCNGC	2 cut(s)	266, 312
Sau3AI	GATC	1 cut(s)	697
Sau96I	GGNCC	1 cut(s)	454
SduI	GDGCHC	2 cut(s)	408, 444
SfaNI	GCATC	2 cut(s)	16, 133
SinI	GGWCC	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	326, 443
SmoI	CTYRAG	2 cut(s)	326, 443
Sse9I	AATT	1 cut(s)	683
SsiI	CCGC	1 cut(s)	363
SstI	GAGCTC	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	348, 591
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	683
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	4 cut(s)	31, 91, 112, 143
Tru1I	TTAA	7 cut(s)	36, 129, 162, 327, 350, 449, 467
Tru9I	TTAA	7 cut(s)	36, 129, 162, 327, 350, 449, 467
TscAI	CASTG	1 cut(s)	596
TseI	GCWGC	2 cut(s)	265, 311
TspDTI	ATGAA	4 cut(s)	185, 347, 555, 597
TspGWI	ACGGA	2 cut(s)	105, 167
TspRI	CASTG	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.