Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Forward (+)

171764 .. 176863

Gene Structure 5100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggacgacgatttgcttctcaagaacttctacgccgaagtcagcgaagttgagagggataaccaagtcctcaggatcctctcctgcttcaagttaaatcccttcgaatatcttaacttaccatttgatgcgaccgaagaagatgttaaaaaacagtatcgaaagttgtccttgatggttcaccctgataaatgcaagcatccacaggctaaggaggcatttggagcattggcgaaagcccaccaacttttactcgatcaacaagaaagggactacatcattagccaagtcactgctgccaaagacgaactcagagcaaaaaggaagaagcagttgaagaaagatacagcttctaaaataaagtcattggtcgatgagggaaaatatgagcaacagtatgagcagtctgaagagtttcagcaagaactaaaaatgaaggttcgagaaatattaacagaacaagaatggcggaggagaaaaatgcaaatgaggatatcagaagaggaaggaagattgaaaaaagatgaagaagaagccaaagagatgtggaaaagaaaacgagatcatgaggcagaatgggaaggaacaagagaaaaaagggtttcaagctggagagattttatgaagggtggaaagaaggccaagaaaggagaacttcgacctcccaaactgaaaactgaagatcctaacaagtcttatgttcagaggccagtaaaacgaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

241

Amino Acids

28.86

Weight (kDa)

9.26

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	3 cut(s)	70, 83, 677
AcuI	CTGAAG	2 cut(s)	429, 699
AgsI	TTSAA	4 cut(s)	91, 337, 517, 606
AluBI	AGCT	2 cut(s)	350, 609
AluI	AGCT	2 cut(s)	350, 609
AlwI	GGATC	3 cut(s)	70, 83, 677
AoxI	GGCC	2 cut(s)	639, 707
ApeKI	GCWGC	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	77
BmsI	GCATC	2 cut(s)	118, 208
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	710
Bse21I	CCTNAGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	85, 325
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	641, 709
BsiEI	CGRYCG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	641, 709
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	4 cut(s)	75, 256, 562, 682
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	2 cut(s)	641, 709
BspCNI	CTCAG	2 cut(s)	84, 324
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	3 cut(s)	70, 83, 677
BspT104I	TTCGAA	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	710
BssMI	GATC	4 cut(s)	75, 256, 562, 682
Bst4CI	ACNGT	2 cut(s)	156, 396
Bst6I	CTCTTC	2 cut(s)	405, 495
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	71, 210, 311
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	4 cut(s)	78, 259, 565, 685
BstMBI	GATC	4 cut(s)	75, 256, 562, 682
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstV1I	GCAGC	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	75, 682
BstYI	RGATCY	2 cut(s)	75, 682
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	641, 709
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	1 cut(s)	565
CviAII	CATG	1 cut(s)	566
CviJI	RGCY	9 cut(s)	209, 239, 285, 350, 536, 609, 641, 709, 723
CviKI_1	RGCY	9 cut(s)	209, 239, 285, 350, 536, 609, 641, 709, 723
DdeI	CTNAG	3 cut(s)	71, 210, 311
DpnI	GATC	4 cut(s)	77, 258, 564, 684
DpnII	GATC	4 cut(s)	75, 256, 562, 682
Eam1104I	CTCTTC	2 cut(s)	405, 495
EarI	CTCTTC	2 cut(s)	405, 495
EciI	GGCGGA	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	495
Eco57I	CTGAAG	2 cut(s)	429, 699
Eco81I	CCTNAGG	1 cut(s)	71
EcoRV	GATATC	1 cut(s)	495
FaeI	CATG	1 cut(s)	569
FaiI	YATR	5 cut(s)	387, 399, 567, 623, 699
FalI	AAGNNNNNCTT	4 cut(s)	155, 187, 639, 671
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	2 cut(s)	641, 709
Hin1II	CATG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	314, 409, 499, 705
Hpy188III	TCNNGA	4 cut(s)	22, 73, 443, 566
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	112, 430, 500, 575, 619, 631
HpyCH4III	ACNGT	2 cut(s)	156, 396
HpyCH4V	TGCA	2 cut(s)	195, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	3 cut(s)	71, 210, 311
Hsp92II	CATG	1 cut(s)	569
Kzo9I	GATC	4 cut(s)	75, 256, 562, 682
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	5 cut(s)	58, 97, 191, 198, 595
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	2 cut(s)	118, 208
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	4 cut(s)	77, 258, 564, 684
MboI	GATC	4 cut(s)	75, 256, 562, 682
MflI	RGATCY	2 cut(s)	75, 682
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	4 cut(s)	95, 114, 147, 452
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NdeII	GATC	4 cut(s)	75, 256, 562, 682
NlaIII	CATG	1 cut(s)	569
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	289
NspV	TTCGAA	1 cut(s)	105
PagI	TCATGA	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	414
PkrI	GCNGC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	75, 682
SaqAI	TTAA	4 cut(s)	95, 114, 147, 452
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	4 cut(s)	75, 256, 562, 682
SetI	ASST	4 cut(s)	352, 441, 611, 664
SfaNI	GCATC	2 cut(s)	118, 208
SfuI	TTCGAA	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	1 cut(s)	469
SspI	AATATT	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	156, 396
TaqI	TCGA	6 cut(s)	105, 160, 255, 372, 442, 658
TaqII	GACCGA	1 cut(s)	149
Tru1I	TTAA	4 cut(s)	95, 114, 147, 452
Tru9I	TTAA	4 cut(s)	95, 114, 147, 452
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	449, 540, 638
TspRI	CASTG	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.