Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

14751739 .. 14752730

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0177800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCCGAGCAACACCAGAATCTTGGAAGCTCTTAATGTCAGGGTAACCTGGTCGGGCGAGCAGTACCTGGTCCTGGCCCATGGCTTCGGCACTGACCAGTTCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTATCGCATCGTTCTATACGACCTCGTTTGTGCTGAAGCGTCAACCCCGATTACTTCGATTTCAACCGCAACACCTAGCTCCCCAAAAACAAGATCAAATCATGTCCCTCCGTCGCCGCAATTGTCACCGAACCACCCCCCAATCACCGACCCACCCTCGGGGATTTTAGGTGAGTTTCTGGGTTTTGAATCGAGAGATGAGTTTGATTGTTTGAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

119

Amino Acids

13.25

Weight (kDa)

5.84

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	204, 254
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	73, 295, 296
AgsI	TTSAA	3 cut(s)	130, 201, 326
AjnI	CCWGG	4 cut(s)	47, 66, 72, 104
AluBI	AGCT	2 cut(s)	29, 216
AluI	AGCT	2 cut(s)	29, 216
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	70, 76
AsuHPI	GGTGA	3 cut(s)	255, 274, 320
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	70
BciT130I	CCWGG	4 cut(s)	49, 68, 74, 106
BfaI	CTAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	254
BlsI	GCNGC	1 cut(s)	255
Bme1390I	CCNGG	4 cut(s)	49, 68, 74, 106
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	70, 76
BmrFI	CCNGG	4 cut(s)	49, 68, 74, 106
BmsI	GCATC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	79, 105, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 295, 296
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	4 cut(s)	49, 68, 74, 106
BseDI	CCNNGG	3 cut(s)	79, 105, 294
BseLI	CCNNNNNNNGG	3 cut(s)	73, 295, 296
BseNI	ACTGG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	73, 295, 296
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	230
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	2 cut(s)	204, 254
BspANI	GGCC	1 cut(s)	77
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	79, 105, 294
BssMI	GATC	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	4 cut(s)	49, 68, 74, 106
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstNI	CCWGG	4 cut(s)	49, 68, 74, 106
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	4 cut(s)	47, 66, 72, 104
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	70, 76
CseI	GACGC	1 cut(s)	165
CsiI	ACCWGGT	2 cut(s)	47, 66
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	2 cut(s)	80, 239
CviJI	RGCY	5 cut(s)	29, 77, 84, 216, 355
CviKI_1	RGCY	5 cut(s)	29, 77, 84, 216, 355
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	4 cut(s)	47, 66, 72, 104
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	2 cut(s)	83, 242
FaiI	YATR	3 cut(s)	81, 154, 240
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	79, 238
Fnu4HI	GCNGC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	254
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	77
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	2 cut(s)	83, 242
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	2 cut(s)	18, 326
HphI	GGTGA	3 cut(s)	255, 274, 320
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	180
Hpy99I	CGWCG	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	83, 242
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	221
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	2 cut(s)	47, 66
MaeI	CTAG	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	43, 261
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	2 cut(s)	110, 118
MfeI	CAATTG	1 cut(s)	257
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	4 cut(s)	170, 255, 304, 345
MseI	TTAA	1 cut(s)	33
MspR9I	CCNGG	4 cut(s)	49, 68, 74, 106
MunI	CAATTG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	49, 68, 74, 106
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	2 cut(s)	83, 242
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	18, 326
PkrI	GCNGC	1 cut(s)	255
Psp6I	CCWGG	4 cut(s)	47, 66, 72, 104
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	4 cut(s)	47, 66, 72, 104
PspPI	GGNCC	2 cut(s)	70, 76
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	70, 76
ScrFI	CCNGG	4 cut(s)	49, 68, 74, 106
SetI	ASST	8 cut(s)	31, 50, 69, 136, 162, 214, 218, 310
SexAI	ACCWGGT	2 cut(s)	47, 66
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	204, 254
SspMI	CTAG	1 cut(s)	213
StyD4I	CCNGG	4 cut(s)	47, 66, 72, 104
StyI	CCWWGG	1 cut(s)	79
TaqI	TCGA	2 cut(s)	194, 329
TasI	AATT	1 cut(s)	257
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	2 cut(s)	18, 326
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	70
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.