Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

20315223 .. 20321561

Gene Structure 6339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1174000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGACGACGATTTGCTTCTCAAGAACTTCTTCGCCGAAGTGAGTGAAGTTGAGCGGGACAACCAAGTCCTCAGGATCCTCTCCTGCTTCAAGTTAAATCCTTTTGAGTATCTTAACTTACCCTTTGATGCATCCCCAGAAGATGTCAAAAGGCAGTATCGTAAGTTATCCTTAATGGTTCACCCTGATAAATGCAAGCATCCACAGGCTAAGGAGGCATTTGGAGCATTGGCAAAAGCCCAACAACTATTACTTGATCAACAGGAAAGGGATTATATCATTAGCCAAGTAAATGCCGCCAAAGAAGAACTTAAAGCAAAAAGGAAGAAGCAGTTGAAGAAAGATACAGCTTCTAAAATAAAATCATTGGTTGATGAGGGAAAATACGAGCACCAGTATGAACAGTCAGAAGAGTTCCAGCAAGAACTCAAAATGAAGGTTCGAGATATATTAACAGAACAAGAATGGCGAAGGAGAAAAATGCAAATGAGGATTTCAGAAGAGGAAGGTAGATTGAAAAAAGATGAAGAAGAAACCAAAGAGATGTGGAAAAGGAAACGGGAGCATGAGGAACAATGGGAAGGAACAAGAGAACAGAGGGTTTCGAGCTGGAGGGATTTTATGAAGGGTGGAAAGAAGGCCAAAAAGGGAGAAATTCGACCTCCTAAGCTCAAGACTGAAGACCCTAACAAATCTTACGTTCAAAGGCCAGTAAAACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

242

Amino Acids

28.91

Weight (kDa)

9.29

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	34 - 91	6.2e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	2 cut(s)	55, 297
AclWI	GGATC	2 cut(s)	70, 83
AcsI	RAATTY	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	91, 337, 517, 704
AluBI	AGCT	3 cut(s)	350, 609, 670
AluI	AGCT	3 cut(s)	350, 609, 670
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	70, 83
AoxI	GGCC	2 cut(s)	639, 707
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	256
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	77
BmsI	GCATC	3 cut(s)	118, 140, 208
BpiI	GAAGAC	1 cut(s)	687
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	2 cut(s)	210, 666
BpuEI	CTTGAG	2 cut(s)	5, 656
Bse1I	ACTGG	2 cut(s)	394, 710
Bse21I	CCTNAGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	131, 199
BseMII	CTCAG	1 cut(s)	85
BseNI	ACTGG	2 cut(s)	394, 710
BshFI	GGCC	2 cut(s)	641, 709
BsiHKAI	GWGCWC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	641, 709
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	75, 256
BspACI	CCGC	2 cut(s)	55, 297
BspANI	GGCC	2 cut(s)	641, 709
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	70, 83
BsrBI	CCGCTC	1 cut(s)	55
BsrI	ACTGG	2 cut(s)	394, 710
BssMI	GATC	2 cut(s)	75, 256
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	405, 495
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	71, 210, 666
BstF5I	GGATG	2 cut(s)	131, 199
BstKTI	GATC	2 cut(s)	78, 259
BstMBI	GATC	2 cut(s)	75, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 224
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	2 cut(s)	641, 709
BtsCI	GGATG	2 cut(s)	131, 199
Cac8I	GCNNGC	1 cut(s)	197
CviAII	CATG	1 cut(s)	566
CviJI	RGCY	8 cut(s)	209, 239, 285, 350, 609, 641, 670, 709
CviKI_1	RGCY	8 cut(s)	209, 239, 285, 350, 609, 641, 670, 709
DdeI	CTNAG	3 cut(s)	71, 210, 666
DpnI	GATC	2 cut(s)	77, 258
DpnII	GATC	2 cut(s)	75, 256
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
Eam1104I	CTCTTC	2 cut(s)	405, 495
EarI	CTCTTC	2 cut(s)	405, 495
Eco57I	CTGAAG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	1 cut(s)	569
FaiI	YATR	5 cut(s)	276, 399, 449, 567, 623
FalI	AAGNNNNNCTT	6 cut(s)	14, 46, 155, 187, 294, 326
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	565
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	2 cut(s)	118, 186
Fsp4HI	GCNGC	1 cut(s)	297
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	2 cut(s)	641, 709
Hin1II	CATG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	409, 499
Hpy188III	TCNNGA	4 cut(s)	22, 73, 443, 673
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	6 cut(s)	430, 465, 500, 575, 619, 631
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	3 cut(s)	131, 195, 484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 224
HpyF3I	CTNAG	3 cut(s)	71, 210, 666
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	75, 256
LmnI	GCTCC	2 cut(s)	224, 562
LpnPI	CCDG	9 cut(s)	58, 97, 150, 191, 198, 248, 407, 431, 595
LweI	GCATC	3 cut(s)	118, 140, 208
MaeII	ACGT	1 cut(s)	699
MalI	GATC	2 cut(s)	77, 258
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	75, 256
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	1 cut(s)	654
Mph1103I	ATGCAT	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	5 cut(s)	95, 114, 173, 312, 452
MslI	CAYNNNNRTG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	215, 224
NdeII	GATC	2 cut(s)	75, 256
NlaIII	CATG	1 cut(s)	569
NlaIV	GGNNCC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	5 cut(s)	95, 114, 173, 312, 452
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	75, 256
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	352, 441, 511, 611, 664, 672, 702, 724
SfaNI	GCATC	3 cut(s)	118, 140, 208
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	20, 671
SmoI	CTYRAG	2 cut(s)	20, 671
Sse9I	AATT	1 cut(s)	654
SsiI	CCGC	2 cut(s)	55, 297
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	3 cut(s)	442, 605, 658
TasI	AATT	1 cut(s)	654
TauI	GCSGC	1 cut(s)	299
Tru1I	TTAA	5 cut(s)	95, 114, 173, 312, 452
Tru9I	TTAA	5 cut(s)	95, 114, 173, 312, 452
TspDTI	ATGAA	4 cut(s)	414, 449, 540, 638
XapI	RAATTY	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.