Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

15150323 .. 15156646

Gene Structure 6324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14850.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGCTTAAAAGTTTGGCAGTGGAGGAAGGAAGATTGAAAAGGCTATTCTTGAGATTTCAATCTCCGAGGCGAAGCTTTAGAGCGACATCCATGGACGACGATTTGCTTCTCAAGAACTTCTTCGCTGAAGTTAGTGAAGTTGAGCGGGACAACCAAGTCCTCAGGATCCTCTCCTGCTTCAAGTTAAATCCTTTTGAGTATCTTAACTTACCCTTTGATGCATCCCCAGAAGATGTCAAAAGGCAGTATCGTAAGTTATCCTTAATGGTTCACCCTGATAAATGCAAGCATCCACAGGCTAAGGAGGCATTTGGAGCATTGGCAAAAGCCCAACAACTATTACTTGATCAACAGGAAAGGGATTATATCATTAGCCAAGTAAATGCCGCCAAAGAAGAACTTAGAGCTAAAAGGAAGAAGCAGTTGAAGAAAGATACAGCTTCTAAAATAAAATCATTGGTTGATGAGGGAAAATACGAGCACCAGTATGAACAGTCAGAAGAGTTCCAGCAAGAACTCAAAATGAAGGTTCGAGATATATTAACAGAACAAGAATGGCGAAGGAGAAAAATGCAAATGAGGATTTCAGAAGAGGAAGGTAGATTGAAAAAAGATGAAGAAGAAACCAAAGAGATGTGGAAAAGGAAACGGGAGCATGAGGAACAATGGGAAGGAACAAGAGAACAGAGGGTTTCAAGCTGGAGGGATTTTATGAAGGGTGGAAAGAAGGCCAAAAAGGGAGAAATTCGACCTCCTAAGCTCAAGACTGAAGACCCTAACAAATCTTATGTTCAAAGGCCGGTAAAACGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

272

Amino Acids

32.51

Weight (kDa)

9.62

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	145
AciI	CCGC	2 cut(s)	145, 387
AclWI	GGATC	2 cut(s)	160, 173
AcsI	RAATTY	1 cut(s)	744
AcuI	CTGAAG	2 cut(s)	147, 789
AgsI	TTSAA	7 cut(s)	37, 59, 181, 427, 607, 696, 794
AluBI	AGCT	5 cut(s)	75, 407, 440, 699, 760
AluI	AGCT	5 cut(s)	75, 407, 440, 699, 760
Alw21I	GWGCWC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	160, 173
AoxI	GGCC	2 cut(s)	729, 797
ApoI	RAATTY	1 cut(s)	744
Asp700I	GAANNNNTTC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	346
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	167
BmsI	GCATC	3 cut(s)	208, 230, 298
BpiI	GAAGAC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	2 cut(s)	300, 756
BpuEI	CTTGAG	3 cut(s)	70, 95, 746
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	65, 90
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	1 cut(s)	484
Bse21I	CCTNAGG	1 cut(s)	161
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	65, 90
BseGI	GGATG	3 cut(s)	86, 221, 289
BseJI	GATNNNNATC	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	731, 799
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	731, 799
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	165, 346
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	2 cut(s)	145, 387
BspANI	GGCC	2 cut(s)	731, 799
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	160, 173
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	484
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	2 cut(s)	65, 90
BssMI	GATC	2 cut(s)	165, 346
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	2 cut(s)	495, 585
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	4 cut(s)	161, 300, 401, 756
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	3 cut(s)	86, 221, 289
BstKTI	GATC	2 cut(s)	168, 349
BstMBI	GATC	2 cut(s)	165, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 314
BstV2I	GAAGAC	1 cut(s)	777
BstX2I	RGATCY	1 cut(s)	165
BstYI	RGATCY	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	731, 799
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	86, 221, 289
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	799
CviAII	CATG	2 cut(s)	91, 656
DdeI	CTNAG	4 cut(s)	161, 300, 401, 756
DpnI	GATC	2 cut(s)	167, 348
DpnII	GATC	2 cut(s)	165, 346
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	495, 585
EarI	CTCTTC	2 cut(s)	495, 585
Eco130I	CCWWGG	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	147, 789
Eco81I	CCTNAGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	2 cut(s)	94, 659
FaiI	YATR	7 cut(s)	92, 366, 489, 539, 657, 713, 789
FalI	AAGNNNNNCTT	6 cut(s)	104, 136, 245, 277, 384, 416
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	90, 655
FauI	CCCGC	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	73, 208, 276
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	731, 799
HapII	CCGG	1 cut(s)	800
Hin1II	CATG	2 cut(s)	94, 659
HindIII	AAGCTT	1 cut(s)	73
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	66, 499, 589
Hpy188III	TCNNGA	5 cut(s)	49, 112, 163, 533, 763
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	7 cut(s)	20, 520, 555, 590, 665, 709, 721
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4V	TGCA	3 cut(s)	221, 285, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 314
HpyF3I	CTNAG	4 cut(s)	161, 300, 401, 756
Hsp92II	CATG	2 cut(s)	94, 659
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	165, 346
LmnI	GCTCC	2 cut(s)	314, 652
LpnPI	CCDG	9 cut(s)	148, 187, 240, 281, 288, 338, 497, 521, 685
LweI	GCATC	3 cut(s)	208, 230, 298
MalI	GATC	2 cut(s)	167, 348
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	2 cut(s)	165, 346
MflI	RGATCY	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	1 cut(s)	744
Mph1103I	ATGCAT	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	5 cut(s)	6, 185, 204, 263, 542
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	2 cut(s)	305, 314
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	165, 346
NlaIII	CATG	2 cut(s)	94, 659
NlaIV	GGNNCC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	6, 185, 204, 263, 542
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	165, 346
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	9 cut(s)	77, 409, 442, 531, 601, 701, 754, 762, 814
SfaNI	GCATC	3 cut(s)	208, 230, 298
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	3 cut(s)	49, 110, 761
SmoI	CTYRAG	3 cut(s)	49, 110, 761
Sse9I	AATT	1 cut(s)	744
SsiI	CCGC	2 cut(s)	145, 387
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	532, 748
TasI	AATT	1 cut(s)	744
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	5 cut(s)	6, 185, 204, 263, 542
Tru9I	TTAA	5 cut(s)	6, 185, 204, 263, 542
TscAI	CASTG	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	504, 539, 630, 728
TspRI	CASTG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.