Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

14797600 .. 14798557

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTTCGATTTGTCAACTCAGGTACTGAAGCATGCCTGAGTGTGCTCCGCCTGGCCCGTGCTTACACTGGCCGAGGGAAGATTGTTAAGTTTGAGGGTTGTTACCATGGTCATGCCGATTCATTTCTTGTGAAGGCTGGTAGTGGAGTTGCCCCATTAGGACTCCCAGACTCACCAGGAGTTCCTAAGGTAGCCACTGTGGATACTCTAACAGCCCCCTACAATGACTTGTTGGCTGTGGAAGCTCTCTTTCAAAAACACGGTGCTCTCCTCATTTTTGATGAAGTGATGACTGGCTTCCGCTTGTCTTATGGTGGAGCACAGGAGTATTTTGGCATTACGCCTGATCTAACAACACTCGGCAAGATCATTGGTGGCGGTCTGCCACTTGGTGCATATGGCGGAAGGAGGGAGATAATGGAAATGGTAGCACCAGTAGGTCCAGTGTACCAAGCCGGGACCTTCTGCGGCAACCCATTGTCAATGACTGCAGGGATTCAGACTCTTAAGAGTTTAAAGGAGCCAGGAAGTTATGAACACCTGAATAAGATTACAAGTGAACTAATTCAAGGTATCATAGATGCTGGGAAGAGGGCTGGGCATACAATCTGCGGTGGATACATAAGTGGGATCTTTGGGTTTTTCTTCACTGAAGGGCCTGTTTACAACTTTGACGATGCAAAAAGGAGTGACAGCGCAAAGTATGGGAGGTTTCATAGGGGAATGCTGGAGGAAGGTGTGTACTTTGCTCCTTCACAGTTTGAGGCCGGCTTACAAGCATGGCACATACTCCTGAAGACATCCGAATTACGATCGATAGCTGCTGCAGCGAAAGTTTTTAGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

282

Amino Acids

30.24

Weight (kDa)

8.26

Isoelectric Point (pI)

33.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	2 - 76	1.5e-08	Aminotransferase class-III
Aminotran_3	PF00202	79 - 198	6e-25	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	49, 301, 378, 402, 468, 612
AclWI	GGATC	1 cut(s)	638
AcoI	YGGCCR	1 cut(s)	70
AcuI	CTGAAG	3 cut(s)	48, 672, 815
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	3 cut(s)	25, 449, 743
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	254, 569
AjnI	CCWGG	3 cut(s)	51, 175, 523
AluBI	AGCT	2 cut(s)	245, 821
AluI	AGCT	2 cut(s)	245, 821
Alw21I	GWGCWC	3 cut(s)	48, 268, 322
AlwI	GGATC	1 cut(s)	638
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	4 cut(s)	54, 70, 656, 765
ApeKI	GCWGC	3 cut(s)	821, 824, 827
Asp700I	GAANNNNTTC	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	4 cut(s)	55, 440, 459, 656
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	1 cut(s)	165
AvaII	GGWCC	2 cut(s)	440, 459
AxyI	CCTNAGG	1 cut(s)	186
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	3 cut(s)	48, 268, 322
BbvI	GCAGC	3 cut(s)	808, 811, 839
BciT130I	CCWGG	3 cut(s)	53, 177, 525
BciVI	GTATCC	2 cut(s)	196, 611
BcnI	CCSGG	1 cut(s)	457
BfmI	CTRYAG	2 cut(s)	489, 825
BfrI	CTTAAG	1 cut(s)	506
BfuI	GTATCC	2 cut(s)	196, 611
BisI	GCNGC	4 cut(s)	469, 822, 825, 828
BlsI	GCNGC	4 cut(s)	470, 823, 826, 829
Bme1390I	CCNGG	4 cut(s)	53, 177, 457, 525
Bme18I	GGWCC	2 cut(s)	440, 459
BmgT120I	GGNCC	4 cut(s)	55, 440, 459, 656
BmiI	GGNNCC	2 cut(s)	460, 522
BmrFI	CCNGG	4 cut(s)	53, 177, 457, 525
BmsI	GCATC	2 cut(s)	571, 667
BpiI	GAAGAC	1 cut(s)	803
BpmI	CTGGAG	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	73, 106
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	4 cut(s)	73, 298, 434, 443
Bse21I	CCTNAGG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	53, 177, 525
BseCI	ATCGAT	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	73, 106
BseGI	GGATG	1 cut(s)	800
BseMII	CTCAG	2 cut(s)	29, 33
BseNI	ACTGG	4 cut(s)	73, 298, 434, 443
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	808, 811, 839
BseYI	CCCAGC	2 cut(s)	584, 596
Bsh1285I	CGRYCG	1 cut(s)	815
BshFI	GGCC	4 cut(s)	56, 72, 658, 767
BshVI	ATCGAT	1 cut(s)	815
BsiEI	CGRYCG	1 cut(s)	815
BsiHKAI	GWGCWC	3 cut(s)	48, 268, 322
BsiSI	CCGG	2 cut(s)	456, 768
BslFI	GGGAC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	4 cut(s)	56, 72, 658, 767
Bsp1286I	GDGCHC	3 cut(s)	48, 268, 322
Bsp143I	GATC	4 cut(s)	346, 366, 630, 812
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	6 cut(s)	49, 301, 378, 402, 468, 612
BspANI	GGCC	4 cut(s)	56, 72, 658, 767
BspCNI	CTCAG	2 cut(s)	30, 32
BspDI	ATCGAT	1 cut(s)	815
BspLI	GGNNCC	2 cut(s)	460, 522
BspMAI	CTGCAG	2 cut(s)	493, 829
BspPI	GGATC	1 cut(s)	638
BspTI	CTTAAG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	767
BsrI	ACTGG	4 cut(s)	73, 298, 434, 443
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	2 cut(s)	73, 106
BssMI	GATC	4 cut(s)	346, 366, 630, 812
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	3 cut(s)	53, 177, 525
Bst4CI	ACNGT	3 cut(s)	199, 263, 759
Bst6I	CTCTTC	1 cut(s)	584
BstAFI	CTTAAG	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	34, 769
BstDEI	CTNAG	3 cut(s)	19, 38, 186
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	4 cut(s)	349, 369, 633, 815
BstMBI	GATC	4 cut(s)	346, 366, 630, 812
BstMCI	CGRYCG	1 cut(s)	815
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 827
BstNI	CCWGG	3 cut(s)	53, 177, 525
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	4 cut(s)	51, 175, 455, 523
BstSFI	CTRYAG	2 cut(s)	489, 825
BstV1I	GCAGC	3 cut(s)	808, 811, 839
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
Bsu15I	ATCGAT	1 cut(s)	815
Bsu36I	CCTNAGG	1 cut(s)	186
BsuI	GTATCC	2 cut(s)	196, 611
BsuRI	GGCC	4 cut(s)	56, 72, 658, 767
BsuTUI	ATCGAT	1 cut(s)	815
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	800
BtsIMutI	CAGTG	4 cut(s)	66, 195, 450, 648
Cac8I	GCNNGC	2 cut(s)	34, 769
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	1 cut(s)	698
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	4 cut(s)	55, 440, 459, 656
ClaI	ATCGAT	1 cut(s)	815
Csp6I	GTAC	3 cut(s)	24, 448, 742
CviAII	CATG	4 cut(s)	33, 107, 113, 780
CviQI	GTAC	3 cut(s)	24, 448, 742
DdeI	CTNAG	3 cut(s)	19, 38, 186
DpnI	GATC	4 cut(s)	348, 368, 632, 814
DpnII	GATC	4 cut(s)	346, 366, 630, 812
DraI	TTTAAA	1 cut(s)	516
DraIII	CACNNNGTG	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
EciI	GGCGGA	2 cut(s)	38, 417
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	440, 459
Eco57I	CTGAAG	3 cut(s)	48, 672, 815
Eco81I	CCTNAGG	1 cut(s)	186
EcoO109I	RGGNCCY	2 cut(s)	459, 656
EcoRII	CCWGG	3 cut(s)	51, 175, 523
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	4 cut(s)	36, 110, 116, 783
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	4 cut(s)	32, 106, 112, 779
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	469, 822, 825, 828
FokI	GGATG	1 cut(s)	787
Fsp4HI	GCNGC	4 cut(s)	469, 822, 825, 828
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	4 cut(s)	469, 822, 825, 828
GsaI	CCCAGC	2 cut(s)	588, 600
GsuI	CTGGAG	1 cut(s)	749
HaeIII	GGCC	4 cut(s)	56, 72, 658, 767
HapII	CCGG	2 cut(s)	456, 768
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	4 cut(s)	36, 110, 116, 783
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HinfI	GANTC	5 cut(s)	119, 162, 170, 496, 502
HpaII	CCGG	2 cut(s)	456, 768
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	5 cut(s)	16, 448, 560, 664, 742
Hpy188I	TCNGA	2 cut(s)	501, 805
Hpy188III	TCNNGA	1 cut(s)	793
Hpy8I	GTNNAC	5 cut(s)	16, 448, 560, 664, 742
HpyAV	CCTTC	6 cut(s)	127, 399, 472, 647, 728, 762
HpyCH4III	ACNGT	3 cut(s)	199, 263, 759
HpyCH4V	TGCA	4 cut(s)	395, 491, 680, 827
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 827
HpyF3I	CTNAG	3 cut(s)	19, 38, 186
Hsp92II	CATG	4 cut(s)	36, 110, 116, 783
HspAI	GCGC	1 cut(s)	696
KroI	GCCGGC	1 cut(s)	767
KroNI	GCCGGC	1 cut(s)	769
Kzo9I	GATC	4 cut(s)	346, 366, 630, 812
LmnI	GCTCC	4 cut(s)	51, 317, 520, 754
Lsp1109I	GCAGC	3 cut(s)	808, 811, 839
LweI	GCATC	2 cut(s)	571, 667
MaeIII	GTNAC	2 cut(s)	101, 689
MalI	GATC	4 cut(s)	348, 368, 632, 814
MboI	GATC	4 cut(s)	346, 366, 630, 812
MboII	GAAGA	4 cut(s)	91, 601, 637, 808
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	3 cut(s)	48, 268, 322
MluCI	AATT	2 cut(s)	564, 806
MlyI	GAGTC	3 cut(s)	156, 164, 496
MnlI	CCTC	8 cut(s)	68, 88, 281, 402, 585, 702, 724, 757
MroNI	GCCGGC	1 cut(s)	767
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	3 cut(s)	87, 507, 515
MslI	CAYNNNNRTG	1 cut(s)	111
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	456, 768
MspR9I	CCNGG	4 cut(s)	53, 177, 457, 525
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	3 cut(s)	53, 177, 525
MwoI	GCNNNNNNNGC	2 cut(s)	242, 827
NaeI	GCCGGC	1 cut(s)	769
NciI	CCSGG	1 cut(s)	457
NcoI	CCATGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	4 cut(s)	346, 366, 630, 812
NgoMIV	GCCGGC	1 cut(s)	767
NlaIII	CATG	4 cut(s)	36, 110, 116, 783
NlaIV	GGNNCC	2 cut(s)	460, 522
NmeAIII	GCCGAG	2 cut(s)	98, 339
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	36
PctI	GAATGC	1 cut(s)	729
PdiI	GCCGGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	119, 496
PkrI	GCNGC	4 cut(s)	470, 823, 826, 829
Ple19I	CGATCG	1 cut(s)	815
PleI	GAGTC	3 cut(s)	156, 164, 496
PpsI	GAGTC	3 cut(s)	156, 164, 496
PpuMI	RGGWCCY	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	51, 175, 523
PspFI	CCCAGC	2 cut(s)	584, 596
PspGI	CCWGG	3 cut(s)	51, 175, 523
PspN4I	GGNNCC	2 cut(s)	460, 522
PspPI	GGNCC	4 cut(s)	55, 440, 459, 656
PspPPI	RGGWCCY	1 cut(s)	459
PstI	CTGCAG	2 cut(s)	493, 829
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	630
PvuI	CGATCG	1 cut(s)	815
RsaI	GTAC	3 cut(s)	25, 449, 743
RsaNI	GTAC	3 cut(s)	24, 448, 742
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	87, 507, 515
SatI	GCNGC	4 cut(s)	469, 822, 825, 828
Sau3AI	GATC	4 cut(s)	346, 366, 630, 812
Sau96I	GGNCC	4 cut(s)	55, 440, 459, 656
SchI	GAGTC	3 cut(s)	156, 164, 496
ScrFI	CCNGG	4 cut(s)	53, 177, 457, 525
SduI	GDGCHC	3 cut(s)	48, 268, 322
SfaNI	GCATC	2 cut(s)	571, 667
SfcI	CTRYAG	2 cut(s)	489, 825
SinI	GGWCC	2 cut(s)	440, 459
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SphI	GCATGC	1 cut(s)	36
Sse9I	AATT	2 cut(s)	564, 806
SsiI	CCGC	6 cut(s)	49, 301, 378, 402, 468, 612
StyD4I	CCNGG	4 cut(s)	51, 175, 455, 523
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	3 cut(s)	199, 263, 759
TaqI	TCGA	2 cut(s)	7, 815
TasI	AATT	2 cut(s)	564, 806
TatI	WGTACW	1 cut(s)	741
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	2 cut(s)	119, 496
Tru1I	TTAA	3 cut(s)	87, 507, 515
Tru9I	TTAA	3 cut(s)	87, 507, 515
TscAI	CASTG	4 cut(s)	73, 202, 450, 655
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	3 cut(s)	821, 824, 827
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	4 cut(s)	111, 297, 549, 704
TspRI	CASTG	4 cut(s)	73, 202, 450, 655
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	440, 459
XceI	RCATGY	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.