Rorug07G0177900

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
14773653 .. 14778246
4594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0177900.1

Sequence Viewer

Length: 1386 bp
ATGGCCAAGAACGTCGGAATTCTCGCCGTCGACATCTACTTCCCCCCGTCCTGTATCCAGCAGGAAGCCTTGGAGGCACATGATGGAGCAAGCAAGGGGAAATACACTATTGGACTTGGACAAGATTGCATGGCGTTTTGTTCAGAAGTCGAAGATGTCATCTCAATGAGTTTGACAGTGGTCACAAACCTCCTTGAGAAGTATGGGATTGACCCAAAACAAATTGGTCGCCTGGAAGTTGGTAGCGAGACTGTGATAGACAAAAGCAAATCTATCAAGACCTTCCTGATGCAAATTTTTGAGAAACATGGAAATACTGACATTGAAGGTGTTGACTCAACTAATGCATGCTATGGGGGAACTGCCGCTTTATTCAACTGTGTCAATTGGGTGGAGAGTAGCTCATGGGATGGACGCTATGGACTTGTTGTGTGCACTGACAGTGCGGTCTATGCAGAAGGACCAGCCAGGCCAACCGGTGGAGCAGCTGCTATTGCCTTGCTGATTGGACCTGATGCTCCTATTGCTTTTGAAAGCAAAATTAGGGGGAGTCATATGTCTCACGTCTATGACTTTTACAAGCCAGACCTTGCCAGTGAATATCCGGTTGTTGATGGTAAACTATCTCAAACATGTTATCTTATGGCCCTTGATTCTTGCTATAAGCAATTATGTAAAAAGTATGAGAAAATTGAAGGCAAACAATTTTCTATTGCTGATGCCGAGTATTTTGTATTTCATTCCCCATACAACAAGCTCGTACAAAAAAGCTTTGCTCGTTTGGTGTTCCAAGACTCCGTGAGGAATGCCTGCTCCATTGATGAGGCTGCTAAAGAAAAGTTCGCACCATTCGCGAACCTATCTAGTGATGAGAGCTATGCAAGCCGGGATCTTGAAAAGGTAGCCCAGCAAGTTGCAAAGCCCCTATATGAGGCGAAGGTGCAACCCACAACTCTGGTGCCAAAGCAAGTTGGAAACATGTACACTGCATCCCTTTATGCCGCATTTGCTTCCCTCCTTCACAACAAACATGCCTCATTGGATGGCAAGCGTGTGATACTGTTCTCATACGGAAGTGGCTCAACTGCAACCATGTTCTCGTTGCAACTCCGTGCCGGTCAACATCCCTTTAGCTTGGACAAGATTGCAGCTGTGATGAATGTTGGAGAGAAGTTGAAGTCAAGACATGAGTTCGCTCCAGAGAAGTTTTGTGAAATCATGAAGATCATGGAGCACAGGTATGGAGGCAAAGACTTTGTGACAAACAAGGACATTAGCCTTCTACTTCCAGGCACATTCTACCTCACTGAAGTCGACTCTAAGTATCGTAGATTCTATGCCCAGAAGGATGGCCTTGAGAATGGTGTGGTTGCCAATGGTCACTGA

Protein Analysis

461

Amino Acids

50.8

Weight (kDa)

6.16

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_CoA_synt_N PF01154 2 - 174 2.8e-81 Hydroxymethylglutaryl-coenzyme A synthase N terminal
HMG_CoA_synt_C PF08540 175 - 449 3.6e-110 Hydroxymethylglutaryl-coenzyme A synthase C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011415)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
AccB1I GGYRCC 1 cut(s) 958
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 2 cut(s) 30, 1314
AccII CGCG 1 cut(s) 854
AciI CCGC 3 cut(s) 366, 446, 1002
AclWI GGATC 1 cut(s) 897
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 18, 294
AcuI CTGAAG 1 cut(s) 1329
AfaI GTAC 2 cut(s) 762, 983
AfiI CCNNNNNNNGG 2 cut(s) 479, 931
AflIII ACRYGT 2 cut(s) 632, 978
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 6 cut(s) 326, 376, 533, 695, 896, 1177
AjiI CACGTC 1 cut(s) 565
AjnI CCWGG 3 cut(s) 231, 467, 1288
AluBI AGCT 7 cut(s) 402, 488, 757, 771, 876, 1134, 1151
AluI AGCT 7 cut(s) 402, 488, 757, 771, 876, 1134, 1151
Alw21I GWGCWC 2 cut(s) 437, 1236
Alw26I GTCTC 2 cut(s) 242, 564
Alw44I GTGCAC 1 cut(s) 433
AlwI GGATC 1 cut(s) 897
AoxI GGCC 4 cut(s) 3, 470, 645, 1351
ApaLI GTGCAC 1 cut(s) 433
ApeKI GCWGC 4 cut(s) 485, 488, 827, 1148
ApoI RAATTY 2 cut(s) 18, 294
AsiGI ACCGGT 1 cut(s) 476
AspS9I GGNCC 3 cut(s) 461, 509, 646
AsuC2I CCSGG 1 cut(s) 887
AvaII GGWCC 2 cut(s) 461, 509
BaeGI GKGCMC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 958
Bbv12I GWGCWC 2 cut(s) 437, 1236
BbvI GCAGC 4 cut(s) 475, 497, 814, 1160
BccI CCATC 5 cut(s) 77, 404, 608, 1037, 1343
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 3 cut(s) 233, 469, 1290
BciVI GTATCC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 2 cut(s) 242, 564
BfaI CTAG 1 cut(s) 864
BfuI GTATCC 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 6 cut(s) 366, 486, 489, 828, 1002, 1149
BlsI GCNGC 6 cut(s) 367, 487, 490, 829, 1003, 1150
Bme1390I CCNGG 4 cut(s) 233, 469, 887, 1290
Bme18I GGWCC 2 cut(s) 461, 509
BmgBI CACGTC 1 cut(s) 565
BmgT120I GGNCC 3 cut(s) 461, 509, 646
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 4 cut(s) 233, 469, 887, 1290
BmsI GCATC 4 cut(s) 279, 505, 709, 998
BoxI GACNNNNGTC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 386, 418
BpmI CTGGAG 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 215, 1376
BpuMI CCSGG 1 cut(s) 887
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 2 cut(s) 476, 604
BsaXI ACNNNNNCTCC 2 cut(s) 1223, 1253
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 931
Bse118I RCCGGY 2 cut(s) 476, 1115
Bse1I ACTGG 1 cut(s) 594
BseBI CCWGG 3 cut(s) 233, 469, 1290
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 5 cut(s) 415, 989, 1048, 1123, 1354
BseLI CCNNNNNNNGG 2 cut(s) 479, 931
BseNI ACTGG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 4 cut(s) 475, 497, 814, 1160
BseYI CCCAGC 1 cut(s) 906
Bsh1236I CGCG 1 cut(s) 854
BshFI GGCC 4 cut(s) 5, 472, 647, 1353
BshNI GGYRCC 1 cut(s) 958
BshTI ACCGGT 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 437, 1236
BsiSI CCGG 4 cut(s) 477, 605, 886, 1116
BslI CCNNNNNNNGG 2 cut(s) 479, 931
BsmAI GTCTC 2 cut(s) 242, 564
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 4 cut(s) 5, 472, 647, 1353
Bsp1286I GDGCHC 2 cut(s) 437, 1236
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 2 cut(s) 889, 1224
Bsp68I TCGCGA 1 cut(s) 854
BspACI CCGC 3 cut(s) 366, 446, 1002
BspANI GGCC 4 cut(s) 5, 472, 647, 1353
BspFNI CGCG 1 cut(s) 854
BspHI TCATGA 1 cut(s) 1218
BspLI GGNNCC 1 cut(s) 960
BspPI GGATC 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 958
BsrFI RCCGGY 2 cut(s) 476, 1115
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 1 cut(s) 594
BssAI RCCGGY 2 cut(s) 476, 1115
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 889, 1224
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 3 cut(s) 233, 469, 1290
Bst4CI ACNGT 5 cut(s) 178, 253, 380, 443, 1062
BstAUI TGTACA 1 cut(s) 981
BstC8I GCNNGC 5 cut(s) 91, 349, 811, 883, 1049
BstDEI CTNAG 1 cut(s) 1320
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 5 cut(s) 415, 989, 1048, 1123, 1354
BstFNI CGCG 1 cut(s) 854
BstKTI GATC 2 cut(s) 892, 1227
BstMAI GTCTC 2 cut(s) 242, 564
BstMBI GATC 2 cut(s) 889, 1224
BstMWI GCNNNNNNNGC 7 cut(s) 74, 452, 494, 524, 851, 882, 1007
BstNI CCWGG 3 cut(s) 233, 469, 1290
BstNSI RCATGY 4 cut(s) 351, 636, 982, 1034
BstPAI GACNNNNGTC 1 cut(s) 179
BstSCI CCNGG 4 cut(s) 231, 467, 885, 1288
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 4 cut(s) 475, 497, 814, 1160
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 2 cut(s) 955, 1349
BstYI RGATCY 1 cut(s) 889
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 4 cut(s) 5, 472, 647, 1353
BtrI CACGTC 1 cut(s) 565
BtsCI GGATG 5 cut(s) 415, 989, 1048, 1123, 1354
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 7 cut(s) 183, 435, 448, 601, 984, 1305, 1381
BtuMI TCGCGA 1 cut(s) 854
Cac8I GCNNGC 5 cut(s) 91, 349, 811, 883, 1049
CciI TCATGA 1 cut(s) 1218
Cfr10I RCCGGY 2 cut(s) 476, 1115
Cfr13I GGNCC 3 cut(s) 461, 509, 646
CseI GACGC 1 cut(s) 423
Csp6I GTAC 2 cut(s) 761, 982
CspAI ACCGGT 1 cut(s) 476
CviQI GTAC 2 cut(s) 761, 982
DdeI CTNAG 1 cut(s) 1320
DpnI GATC 2 cut(s) 891, 1226
DpnII GATC 2 cut(s) 889, 1224
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 461, 509
Eco57I CTGAAG 1 cut(s) 1329
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 231, 467, 1288
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 555
FblI GTMKAC 2 cut(s) 30, 1314
Fnu4HI GCNGC 6 cut(s) 366, 486, 489, 828, 1002, 1149
FokI GGATG 5 cut(s) 422, 976, 1055, 1110, 1361
Fsp4HI GCNGC 6 cut(s) 366, 486, 489, 828, 1002, 1149
FspBI CTAG 1 cut(s) 864
GluI GCNGC 6 cut(s) 366, 486, 489, 828, 1002, 1149
GsaI CCCAGC 1 cut(s) 910
GsuI CTGGAG 1 cut(s) 1182
HaeIII GGCC 4 cut(s) 5, 472, 647, 1353
HapII CCGG 4 cut(s) 477, 605, 886, 1116
HgaI GACGC 1 cut(s) 423
HincII GTYRAC 4 cut(s) 31, 334, 1121, 1315
HindII GTYRAC 4 cut(s) 31, 334, 1121, 1315
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 6 cut(s) 335, 550, 653, 794, 1316, 1332
HpaII CCGG 4 cut(s) 477, 605, 886, 1116
Hpy166II GTNNAC 7 cut(s) 31, 334, 435, 620, 984, 1121, 1315
Hpy188I TCNGA 2 cut(s) 17, 145
Hpy188III TCNNGA 7 cut(s) 277, 286, 853, 893, 1182, 1199, 1219
Hpy8I GTNNAC 7 cut(s) 31, 334, 435, 620, 984, 1121, 1315
Hpy99I CGWCG 2 cut(s) 17, 32
HpyAV CCTTC 8 cut(s) 292, 320, 452, 689, 931, 1028, 1289, 1339
HpyCH4III ACNGT 5 cut(s) 178, 253, 380, 443, 1062
HpyCH4IV ACGT 2 cut(s) 12, 564
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 452, 494, 524, 851, 882, 1007
HpyF3I CTNAG 1 cut(s) 1320
HpySE526I ACGT 2 cut(s) 12, 564
Kzo9I GATC 2 cut(s) 889, 1224
LmnI GCTCC 6 cut(s) 86, 482, 523, 818, 1201, 1231
Lsp1109I GCAGC 4 cut(s) 475, 497, 814, 1160
LweI GCATC 4 cut(s) 279, 505, 709, 998
MaeI CTAG 1 cut(s) 864
MaeII ACGT 2 cut(s) 12, 564
MaeIII GTNAC 3 cut(s) 181, 1258, 1379
MalI GATC 2 cut(s) 891, 1226
MboI GATC 2 cut(s) 889, 1224
MboII GAAGA 2 cut(s) 164, 1234
MfeI CAATTG 1 cut(s) 385
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 2 cut(s) 437, 1236
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 18, 222, 294, 385, 540, 668, 690, 704
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 329, 559, 788, 1310
MmeI TCCRAC 2 cut(s) 952, 1144
MnlI CCTC 9 cut(s) 67, 200, 795, 817, 925, 1025, 1045, 1238, 1313
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 164, 567, 1239
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 488, 1151
MspI CCGG 4 cut(s) 477, 605, 886, 1116
MspR9I CCNGG 4 cut(s) 233, 469, 887, 1290
MunI CAATTG 1 cut(s) 385
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 3 cut(s) 233, 469, 1290
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 7 cut(s) 74, 452, 494, 524, 851, 882, 1007
NciI CCSGG 1 cut(s) 887
NdeI CATATG 1 cut(s) 555
NdeII GATC 2 cut(s) 889, 1224
NlaIV GGNNCC 1 cut(s) 960
NmeAIII GCCGAG 1 cut(s) 748
NmuCI GTSAC 3 cut(s) 181, 1258, 1379
NruI TCGCGA 1 cut(s) 854
NsiI ATGCAT 1 cut(s) 349
NspI RCATGY 4 cut(s) 351, 636, 982, 1034
PaeI GCATGC 1 cut(s) 351
PagI TCATGA 1 cut(s) 1218
PciI ACATGT 2 cut(s) 632, 978
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 2 cut(s) 653, 1332
PflMI CCANNNNNTGG 1 cut(s) 479
PinAI ACCGGT 1 cut(s) 476
PkrI GCNGC 6 cut(s) 367, 487, 490, 829, 1003, 1150
PleI GAGTC 4 cut(s) 329, 558, 788, 1310
PpsI GAGTC 4 cut(s) 329, 558, 788, 1310
PscI ACATGT 2 cut(s) 632, 978
PshAI GACNNNNGTC 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 231, 467, 1288
PspFI CCCAGC 1 cut(s) 906
PspGI CCWGG 3 cut(s) 231, 467, 1288
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 3 cut(s) 461, 509, 646
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 2 cut(s) 488, 1151
RruI TCGCGA 1 cut(s) 854
RsaI GTAC 2 cut(s) 762, 983
RsaNI GTAC 2 cut(s) 761, 982
RseI CAYNNNNRTG 3 cut(s) 164, 567, 1239
SalI GTCGAC 2 cut(s) 29, 1313
SatI GCNGC 6 cut(s) 366, 486, 489, 828, 1002, 1149
Sau3AI GATC 2 cut(s) 889, 1224
Sau96I GGNCC 3 cut(s) 461, 509, 646
SchI GAGTC 4 cut(s) 329, 559, 788, 1310
ScrFI CCNGG 4 cut(s) 233, 469, 887, 1290
SduI GDGCHC 2 cut(s) 437, 1236
SfaNI GCATC 4 cut(s) 279, 505, 709, 998
SinI GGWCC 2 cut(s) 461, 509
SmiMI CAYNNNNRTG 3 cut(s) 164, 567, 1239
SmlI CTYRAG 2 cut(s) 194, 1355
SmoI CTYRAG 2 cut(s) 194, 1355
SphI GCATGC 1 cut(s) 351
Sse9I AATT 8 cut(s) 18, 222, 294, 385, 540, 668, 690, 704
SsiI CCGC 3 cut(s) 366, 446, 1002
SspMI CTAG 1 cut(s) 864
StyD4I CCNGG 4 cut(s) 231, 467, 885, 1288
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 5 cut(s) 178, 253, 380, 443, 1062
TaiI ACGT 2 cut(s) 15, 567
TaqI TCGA 3 cut(s) 30, 150, 1314
TasI AATT 8 cut(s) 18, 222, 294, 385, 540, 668, 690, 704
TatI WGTACW 1 cut(s) 981
TauI GCSGC 2 cut(s) 368, 1004
TfiI GAWTC 2 cut(s) 653, 1332
TscAI CASTG 6 cut(s) 183, 442, 448, 601, 991, 1312
TseFI GTSAC 3 cut(s) 181, 1258, 1379
TseI GCWGC 4 cut(s) 485, 488, 827, 1148
Tsp45I GTSAC 3 cut(s) 181, 1258, 1379
TspDTI ATGAA 3 cut(s) 728, 1172, 1235
TspGWI ACGGA 3 cut(s) 787, 1086, 1100
TspRI CASTG 6 cut(s) 183, 442, 448, 601, 991, 1312
Van91I CCANNNNNTGG 1 cut(s) 479
VneI GTGCAC 1 cut(s) 433
VpaK11BI GGWCC 2 cut(s) 461, 509
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 2 cut(s) 18, 294
XceI RCATGY 4 cut(s) 351, 636, 982, 1034
XmiI GTMKAC 2 cut(s) 30, 1314
XspI CTAG 1 cut(s) 864
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.