Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011415

Physical Location & Seq

Genomic Coordinates Reverse (-)

37743324 .. 37749456

Gene Structure 6133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTGCAGGATCCTCTCCTGCTTCAAGTTAAATCCCTTCGAATATCTTAACTTACCATTTGATGCGACCGAAGAAGATGTTAAAAAACAGTATCGAAAGTTGTCCTTGATGGTTCACCCTGATAAATGCAAGCATCCACAGGCTAAGGAGGCATTTGGAGCATTGGCGAAAGCCCACCAACTTTTACTCGATCAACAAGAAAGGGACTATATCATTAGCCAAGTCACTGCTGCCAAAGACGAACTCAGAGCAAAAAGGAAGAAGCAGTTGAAGAAAGATACAGCTTCTAAAATAAAGTCATTGGTCGATGAGGGAAAATATGAGCAACAGTATGAGCAGTCTGAAGAGTTTCAGCAAGAACTAAAAATGAAGGTTCGAGAAATATTAACAGAACAAGAATGGCGGAGGAGAAAAATGCAAATGAGGATATCAGAAGAGGAAGGAAGATTGAAAAAAGATGAAGAAGAAGCCAAAGAGATGTGGAAAAGAAAACGAGATCATGAGGCAGAATGGGAAGGAACAAGAGAAAAAAGGGTATTTTTCTATCCTTTTCAATTTTCTGTGCGACACTATGGCATGGGCTTAAATTTTCATTGTTGTGAGGTTATTATAGTTGGTTCCTTAAAGCAGGATTTTGCAAATTCTTTTATATGCTTAGTAGGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0030544 GO:0031072 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045171 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

222

Amino Acids

26.58

Weight (kDa)

8.76

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	12 - 68	3.1e-16	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011415)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22080 AT5G22080
fragaria_vesca	FvH4_5g27361
malus_domestica	MD03G1156500.v1.1 MD11G1174000.v1.1
prunus_persica	Prupe.6G145600_v2.0.a1
pyrus_communis	pycom11g14850
rosa_chinensis	RchiOBHm_Chr7g0218521
rosa_laevigata	RLG00000002363
rosa_multiflora	Rmu_sc0001301.1_g000039
rosa_roxburghii	Rroxscaffold_3G00240870
rosa_rugosa	Rorug07G0177800 Rorug07G0177900 Rorug07G0178000 Rorug07G0178100
rosa_samantha	Rh7AG319300 Rh7BG311100 Rh7CG336100 Rh7DG318400
rosa_wichuraiana	Rw7G027200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	2 cut(s)	4, 17
AcsI	RAATTY	2 cut(s)	586, 640
AcuI	CTGAAG	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	25, 271, 451, 554
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
AlwI	GGATC	2 cut(s)	4, 17
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	2 cut(s)	586, 640
Asp700I	GAANNNNTTC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	9
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	11, 619
BmsI	GCATC	2 cut(s)	52, 142
Bpu10I	CCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	39
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	217
BsgI	GTGCAG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	3 cut(s)	9, 190, 496
BspACI	CCGC	1 cut(s)	403
BspCNI	CTCAG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	11, 619
BspPI	GGATC	2 cut(s)	4, 17
BspT104I	TTCGAA	1 cut(s)	39
BssMI	GATC	3 cut(s)	9, 190, 496
Bst4CI	ACNGT	2 cut(s)	90, 330
Bst6I	CTCTTC	2 cut(s)	339, 429
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	144, 245, 655
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	12, 193, 499
BstMBI	GATC	3 cut(s)	9, 190, 496
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	499
CviAII	CATG	2 cut(s)	500, 577
CviJI	RGCY	6 cut(s)	143, 173, 219, 284, 470, 582
CviKI_1	RGCY	6 cut(s)	143, 173, 219, 284, 470, 582
DdeI	CTNAG	3 cut(s)	144, 245, 655
DpnI	GATC	3 cut(s)	11, 192, 498
DpnII	GATC	3 cut(s)	9, 190, 496
Eam1104I	CTCTTC	2 cut(s)	339, 429
EarI	CTCTTC	2 cut(s)	339, 429
EciI	GGCGGA	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	429
Eco57I	CTGAAG	1 cut(s)	363
EcoRV	GATATC	1 cut(s)	429
FaeI	CATG	2 cut(s)	503, 580
FaiI	YATR	9 cut(s)	210, 321, 333, 501, 573, 578, 611, 650, 652
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	499, 576
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	231
GluI	GCNGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	503, 580
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	248, 343, 433
Hpy188III	TCNNGA	2 cut(s)	377, 500
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	4 cut(s)	46, 364, 434, 509
HpyCH4III	ACNGT	2 cut(s)	90, 330
HpyCH4V	TGCA	4 cut(s)	6, 129, 418, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	3 cut(s)	144, 245, 655
Hsp92II	CATG	2 cut(s)	503, 580
Kzo9I	GATC	3 cut(s)	9, 190, 496
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	4 cut(s)	31, 125, 132, 614
Lsp1109I	GCAGC	1 cut(s)	217
LweI	GCATC	2 cut(s)	52, 142
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	11, 192, 498
MboI	GATC	3 cut(s)	9, 190, 496
MboII	GAAGA	9 cut(s)	83, 86, 271, 283, 356, 446, 456, 473, 476
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	3 cut(s)	554, 586, 640
MnlI	CCTC	8 cut(s)	23, 142, 304, 399, 417, 430, 496, 595
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	6 cut(s)	29, 48, 81, 386, 584, 623
MslI	CAYNNNNRTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	3 cut(s)	9, 190, 496
NlaIII	CATG	2 cut(s)	503, 580
NlaIV	GGNNCC	2 cut(s)	11, 619
NmuCI	GTSAC	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	39
PagI	TCATGA	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	348
PkrI	GCNGC	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	11, 619
PsuI	RGATCY	1 cut(s)	9
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	6 cut(s)	29, 48, 81, 386, 584, 623
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	3 cut(s)	9, 190, 496
SetI	ASST	3 cut(s)	286, 375, 606
SfaNI	GCATC	2 cut(s)	52, 142
SfuI	TTCGAA	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	3 cut(s)	554, 586, 640
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	90, 330
TaqI	TCGA	5 cut(s)	39, 94, 189, 306, 376
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	3 cut(s)	554, 586, 640
Tru1I	TTAA	6 cut(s)	29, 48, 81, 386, 584, 623
Tru9I	TTAA	6 cut(s)	29, 48, 81, 386, 584, 623
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	383, 474, 581
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	586, 640
XmnI	GAANNNNTTC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.