AT5G22110

DNA polymerase epsilon subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
7330825 .. 7334282
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22110.1

Sequence Viewer

Length: 1581 bp
ATGAGCAGCACCAGTCAGAAGAGGAAGAAGATACAGAAGAAATTCAAAAACAGAGGGTACAACCTCAAATTCGATGCCTTAGACGAGATTCTCGTTTTCGCCGATCAATTTCCCGACGACGATGACGGAGAAGCTATAGATCTTCTCCTCGATAACCTCCAGGAAACGCATAAATCATCCACTGTCGACGCGGAATCAGTTCGAGGATTGATAAATCGCTTGTTAGGAGCTCATAACGCCCCGGAGGAACCTACAACATCTGCTTCTTCCTTGGCGATCATCGACGCGTTTCTGGTGCCAAAGTTTGGATATGATTCTGTTAAAAAAAAGTTCAACGAGCATACGAGTAGCTTGCCTATTCACGGTGAGGCTTCTGCAAAAACAGCTTTATACAGGGAACGATTCATGTTGTTGTCGCAGAGAGTTTCTCGTGCAGAGCATTTTTCTAGGCCAGCATTTGATGCTGAAATGTCGCAGTTTGAGAACAATGAGATATCTTCAATCCAGTCTCTGATTTCTCAAAGGGGAAGGAAATGGGTGATGGGAGTGATATCACAGTTGGAAGATGGACATTTCTACCTGGAAGACCTTTCAGCTTCTGTAGAGATTGATCTGTCCAAAGCAAAGATAACAACAGGATTCTTCACAGAGAATACTATAATTTTGGCAGAAGGCGAAATGCAGGTTAACGGTATCTTTCAGGTGATTACATGTGGATTTCCTCCCTTAGAAGACAGGGACAAAACACTAAAGGCGCATTCTGAATATGATTTCTTCGGAGGCGGCACACTAACTAAAGAAGAGATGATTAAACTTGCAGACCTTGAAAGACAAGCGGTGAATGACACATTTGTCATATTGTCTGACATATGGTTGGACGACGAAGAGGTTATGAGGAAGCTGGAAACTGTTCTTGACGGTTTTGAAAGTGTGGAGACAGTACCCTCCTTGTTTGTTTTTATGGGAAATTTTTGTTCTCGCCCATGCAACTTATCCTTTGGTTCGTATTCAAGCCTTAGGGAGCAGTTTGGTAAACTTGGGAGAATGATTGGAAACCATCCACGGCTTAAAGAAAATAGTCGGTTTTTATTCATTCCAGGTCCTGAGGACGCAGGTCCCTCAACAGTCTTGCCAAGATGCGCTTTACCGAAATATTTAACCGAAGAGCTTCGAAACATTATTCCCAATGCAATATTTTCAAGCAATCCTTGCAGAGTAAAGTTCTATAACCAAGAGATTGTGTTCTTCCGACAAGATCTTCTGTATCGGATGCGTCGTTCATGCTTAGTAACCCCTTCCTCAGAAGAAACGAATGACCCTTTTAAGCATCTTGTCTACACAATAACTCATCAGAGCCATCTATGTCCTCTACCTCTCATGGTGCAACCCATCATTTGGAACTACGATCACGCTCTTCGACTGTACCCAACTCCTCATACGATAGTATTAGGTGACAAGAGTGAGCAAGAGGTTTGCAAATTTGGGGGAACAACATGTTTCAATCCAGGCTCTTTCTCAACTGATAGCACATTCGTAGCTTATCGACCTTCCACTCAAGAAGTCGAACTCTCTGCTTTGTGA

Protein Analysis

526

Amino Acids

59.54

Weight (kDa)

5.38

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_E_B PF04042 284 - 491 5.5e-55 DNA polymerase alpha/epsilon subunit B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 851
Acc36I ACCTGC 2 cut(s) 673, 1103
AccB1I GGYRCC 1 cut(s) 295
AccB7I CCANNNNNTGG 2 cut(s) 305, 1395
AccI GTMKAC 2 cut(s) 186, 1335
AccII CGCG 2 cut(s) 191, 287
AciI CCGC 3 cut(s) 191, 783, 836
AcsI RAATTY 4 cut(s) 41, 68, 967, 1478
AfaI GTAC 3 cut(s) 59, 942, 1424
AfiI CCNNNNNNNGG 3 cut(s) 305, 362, 1395
AflIII ACRYGT 3 cut(s) 285, 710, 1493
AgsI TTSAA 8 cut(s) 46, 334, 501, 827, 926, 1011, 1200, 1501
AjnI CCWGG 4 cut(s) 159, 579, 1096, 1504
AloI GAACNNNNNNTCC 2 cut(s) 1261, 1293
AluBI AGCT 8 cut(s) 134, 230, 351, 386, 596, 901, 1168, 1538
AluI AGCT 8 cut(s) 134, 230, 351, 386, 596, 901, 1168, 1538
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 513, 929
AlwNI CAGNNNCTG 3 cut(s) 511, 599, 1103
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 1 cut(s) 6
ApoI RAATTY 4 cut(s) 41, 68, 967, 1478
Asp700I GAANNNNTTC 4 cut(s) 41, 198, 909, 1167
AspLEI GCGC 2 cut(s) 757, 1142
AspS9I GGNCC 2 cut(s) 1100, 1115
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 5 cut(s) 377, 550, 715, 850, 1463
AsuII TTCGAA 1 cut(s) 1171
AvaII GGWCC 2 cut(s) 1100, 1115
AxyI CCTNAGG 2 cut(s) 1016, 1104
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 2 cut(s) 591, 738
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 18
BccI CCATC 5 cut(s) 535, 560, 1065, 1365, 1397
BceAI ACGGC 1 cut(s) 1079
BcgI CGANNNNNNTGC 3 cut(s) 334, 368, 1553
BciT130I CCWGG 4 cut(s) 161, 581, 1098, 1506
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 513, 929
BfaI CTAG 1 cut(s) 447
BfmI CTRYAG 2 cut(s) 135, 600
BfuAI ACCTGC 2 cut(s) 673, 1103
BglII AGATCT 2 cut(s) 139, 1255
BisI GCNGC 2 cut(s) 7, 784
BlsI GCNGC 2 cut(s) 8, 785
Bme1390I CCNGG 5 cut(s) 161, 242, 581, 1098, 1506
Bme18I GGWCC 2 cut(s) 1100, 1115
BmgT120I GGNCC 2 cut(s) 1100, 1115
BmiI GGNNCC 3 cut(s) 249, 297, 1117
BmrFI CCNGG 5 cut(s) 161, 242, 581, 1098, 1506
BmsI GCATC 5 cut(s) 64, 451, 1127, 1260, 1336
BoxI GACNNNNGTC 1 cut(s) 1113
BpiI GAAGAC 2 cut(s) 591, 738
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 1171
BpuEI CTTGAG 1 cut(s) 1539
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 240, 270, 1061
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 362, 1395
Bse1I ACTGG 2 cut(s) 12, 505
Bse21I CCTNAGG 2 cut(s) 1016, 1104
BseBI CCWGG 4 cut(s) 161, 581, 1098, 1506
BseDI CCNNGG 3 cut(s) 240, 270, 1061
BseGI GGATG 3 cut(s) 176, 1057, 1275
BseLI CCNNNNNNNGG 3 cut(s) 305, 362, 1395
BseMII CTCAG 2 cut(s) 1095, 1314
BseNI ACTGG 2 cut(s) 12, 505
BseRI GAGGAG 2 cut(s) 137, 1422
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 2 cut(s) 191, 287
BshFI GGCC 1 cut(s) 451
BshNI GGYRCC 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 752, 1101
BslI CCNNNNNNNGG 3 cut(s) 305, 362, 1395
BsmAI GTCTC 2 cut(s) 513, 929
BsmFI GGGAC 2 cut(s) 752, 1101
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 1 cut(s) 451
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
BspACI CCGC 3 cut(s) 191, 783, 836
BspANI GGCC 1 cut(s) 451
BspCNI CTCAG 2 cut(s) 1096, 1313
BspFNI CGCG 2 cut(s) 191, 287
BspLI GGNNCC 3 cut(s) 249, 297, 1117
BspMI ACCTGC 2 cut(s) 673, 1103
BspQI GCTCTTC 2 cut(s) 1158, 1419
BspT104I TTCGAA 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 295
BsrI ACTGG 2 cut(s) 12, 505
BssECI CCNNGG 3 cut(s) 240, 270, 1061
BssMI GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
BssSI CACGAG 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 4 cut(s) 161, 581, 1098, 1506
Bst4CI ACNGT 9 cut(s) 184, 365, 558, 692, 910, 920, 940, 1126, 1422
Bst6I CTCTTC 5 cut(s) 14, 795, 879, 1158, 1419
BstAPI GCANNNNNTGC 2 cut(s) 461, 1209
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 2 cut(s) 353, 453
BstDEI CTNAG 6 cut(s) 79, 727, 1016, 1104, 1285, 1300
BstDSI CCRYGG 1 cut(s) 1061
BstF5I GGATG 3 cut(s) 176, 1057, 1275
BstFNI CGCG 2 cut(s) 191, 287
BstHHI GCGC 2 cut(s) 757, 1142
BstKTI GATC 6 cut(s) 106, 142, 279, 613, 1258, 1408
BstMAI GTCTC 2 cut(s) 513, 929
BstMBI GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
BstMWI GCNNNNNNNGC 4 cut(s) 236, 383, 461, 1209
BstNI CCWGG 4 cut(s) 161, 581, 1098, 1506
BstNSI RCATGY 2 cut(s) 714, 1497
BstPAI GACNNNNGTC 1 cut(s) 1113
BstSCI CCNGG 5 cut(s) 159, 240, 579, 1096, 1504
BstSFI CTRYAG 2 cut(s) 135, 600
BstUI CGCG 2 cut(s) 191, 287
BstV1I GCAGC 1 cut(s) 18
BstV2I GAAGAC 2 cut(s) 591, 738
BstX2I RGATCY 2 cut(s) 139, 1255
BstYI RGATCY 2 cut(s) 139, 1255
Bsu36I CCTNAGG 2 cut(s) 1016, 1104
BsuRI GGCC 1 cut(s) 451
BtgI CCRYGG 1 cut(s) 1061
BtsCI GGATG 3 cut(s) 176, 1057, 1275
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 2 cut(s) 673, 1103
Cac8I GCNNGC 2 cut(s) 353, 453
CaiI CAGNNNCTG 3 cut(s) 511, 599, 1103
CfoI GCGC 2 cut(s) 757, 1142
Cfr13I GGNCC 2 cut(s) 1100, 1115
CseI GACGC 4 cut(s) 197, 293, 1118, 1262
Csp6I GTAC 3 cut(s) 58, 941, 1423
CviAII CATG 6 cut(s) 406, 711, 984, 1281, 1378, 1494
CviQI GTAC 3 cut(s) 58, 941, 1423
DdeI CTNAG 6 cut(s) 79, 727, 1016, 1104, 1285, 1300
DpnI GATC 6 cut(s) 105, 141, 278, 612, 1257, 1407
DpnII GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
Eam1104I CTCTTC 5 cut(s) 14, 795, 879, 1158, 1419
EarI CTCTTC 5 cut(s) 14, 795, 879, 1158, 1419
Ecl136II GAGCTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 2 cut(s) 495, 552
Eco47I GGWCC 2 cut(s) 1100, 1115
Eco53kI GAGCTC 1 cut(s) 230
Eco81I CCTNAGG 2 cut(s) 1016, 1104
EcoICRI GAGCTC 1 cut(s) 230
EcoO109I RGGNCCY 2 cut(s) 1100, 1115
EcoRII CCWGG 4 cut(s) 159, 579, 1096, 1504
EcoRV GATATC 2 cut(s) 495, 552
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 6 cut(s) 409, 714, 987, 1284, 1381, 1497
FalI AAGNNNNNCTT 4 cut(s) 1126, 1158, 1192, 1224
FaqI GGGAC 2 cut(s) 752, 1101
FatI CATG 6 cut(s) 405, 710, 983, 1280, 1377, 1493
FauNDI CATATG 1 cut(s) 869
FblI GTMKAC 2 cut(s) 186, 1335
Fnu4HI GCNGC 2 cut(s) 7, 784
FokI GGATG 3 cut(s) 163, 1044, 1282
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 7, 784
FspBI CTAG 1 cut(s) 447
GlaI GCGC 2 cut(s) 756, 1141
GluI GCNGC 2 cut(s) 7, 784
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 1 cut(s) 451
HapII CCGG 1 cut(s) 242
HgaI GACGC 4 cut(s) 197, 293, 1118, 1262
HhaI GCGC 2 cut(s) 757, 1142
Hin1II CATG 6 cut(s) 409, 714, 987, 1284, 1381, 1497
Hin6I GCGC 2 cut(s) 755, 1140
HinP1I GCGC 2 cut(s) 755, 1140
HincII GTYRAC 2 cut(s) 187, 688
HindII GTYRAC 2 cut(s) 187, 688
HinfI GANTC 5 cut(s) 88, 194, 314, 402, 639
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 1 cut(s) 242
HphI GGTGA 5 cut(s) 377, 550, 715, 850, 1463
Hpy166II GTNNAC 4 cut(s) 187, 688, 1034, 1336
Hpy188I TCNGA 9 cut(s) 18, 513, 763, 779, 865, 1250, 1269, 1303, 1353
Hpy188III TCNNGA 4 cut(s) 113, 914, 1103, 1556
Hpy8I GTNNAC 4 cut(s) 187, 688, 1034, 1336
Hpy99I CGWCG 6 cut(s) 119, 122, 191, 287, 884, 1278
HpyAV CCTTC 4 cut(s) 522, 665, 1305, 1557
HpyCH4III ACNGT 9 cut(s) 184, 365, 558, 692, 910, 920, 940, 1126, 1422
HpyCH4V TGCA 9 cut(s) 377, 434, 682, 818, 987, 1190, 1212, 1384, 1476
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 383, 461, 1209
HpyF3I CTNAG 6 cut(s) 79, 727, 1016, 1104, 1285, 1300
Hsp92II CATG 6 cut(s) 409, 714, 987, 1284, 1381, 1497
HspAI GCGC 2 cut(s) 755, 1140
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
LguI GCTCTTC 2 cut(s) 1158, 1419
LmnI GCTCC 2 cut(s) 227, 1021
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 5 cut(s) 64, 451, 1127, 1260, 1336
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 1288, 1451
MalI GATC 6 cut(s) 105, 141, 278, 612, 1257, 1407
MboI GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
MflI RGATCY 2 cut(s) 139, 1255
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 6 cut(s) 41, 68, 107, 660, 967, 1478
MluI ACGCGT 1 cut(s) 285
MmeI TCCRAC 3 cut(s) 540, 855, 1273
MroXI GAANNNNTTC 4 cut(s) 41, 198, 909, 1167
MseI TTAA 6 cut(s) 321, 687, 810, 1068, 1157, 1323
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 5 cut(s) 161, 242, 581, 1098, 1506
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 4 cut(s) 161, 581, 1098, 1506
MvnI CGCG 2 cut(s) 191, 287
MwoI GCNNNNNNNGC 4 cut(s) 236, 383, 461, 1209
NciI CCSGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 869
NdeII GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
NlaIII CATG 6 cut(s) 409, 714, 987, 1284, 1381, 1497
NlaIV GGNNCC 3 cut(s) 249, 297, 1117
NmuCI GTSAC 1 cut(s) 1451
NspI RCATGY 2 cut(s) 714, 1497
NspV TTCGAA 1 cut(s) 1171
PciI ACATGT 2 cut(s) 710, 1493
PciSI GCTCTTC 2 cut(s) 1158, 1419
PcsI WCGNNNNNNNCGW 3 cut(s) 90, 99, 1273
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 4 cut(s) 41, 198, 909, 1167
PfeI GAWTC 5 cut(s) 88, 194, 314, 402, 639
PflMI CCANNNNNTGG 2 cut(s) 305, 1395
PfoI TCCNGGA 1 cut(s) 159
PkrI GCNGC 2 cut(s) 8, 785
PpuMI RGGWCCY 2 cut(s) 1100, 1115
PscI ACATGT 2 cut(s) 710, 1493
PshAI GACNNNNGTC 1 cut(s) 1113
Psp124BI GAGCTC 1 cut(s) 232
Psp5II RGGWCCY 2 cut(s) 1100, 1115
Psp6I CCWGG 4 cut(s) 159, 579, 1096, 1504
PspGI CCWGG 4 cut(s) 159, 579, 1096, 1504
PspN4I GGNNCC 3 cut(s) 249, 297, 1117
PspPI GGNCC 2 cut(s) 1100, 1115
PspPPI RGGWCCY 2 cut(s) 1100, 1115
PstNI CAGNNNCTG 3 cut(s) 511, 599, 1103
PsuI RGATCY 2 cut(s) 139, 1255
RsaI GTAC 3 cut(s) 59, 942, 1424
RsaNI GTAC 3 cut(s) 58, 941, 1423
SacI GAGCTC 1 cut(s) 232
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 2 cut(s) 1158, 1419
SaqAI TTAA 6 cut(s) 321, 687, 810, 1068, 1157, 1323
SatI GCNGC 2 cut(s) 7, 784
Sau3AI GATC 6 cut(s) 103, 139, 276, 610, 1255, 1405
Sau96I GGNCC 2 cut(s) 1100, 1115
ScrFI CCNGG 5 cut(s) 161, 242, 581, 1098, 1506
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 5 cut(s) 64, 451, 1127, 1260, 1336
SfcI CTRYAG 2 cut(s) 135, 600
SfuI TTCGAA 1 cut(s) 1171
SinI GGWCC 2 cut(s) 1100, 1115
SmlI CTYRAG 1 cut(s) 1554
SmoI CTYRAG 1 cut(s) 1554
Sse9I AATT 6 cut(s) 41, 68, 107, 660, 967, 1478
SsiI CCGC 3 cut(s) 191, 783, 836
SspI AATATT 2 cut(s) 1154, 1194
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 1 cut(s) 232
StyD4I CCNGG 5 cut(s) 159, 240, 579, 1096, 1504
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 9 cut(s) 184, 365, 558, 692, 910, 920, 940, 1126, 1422
TaqI TCGA 9 cut(s) 72, 150, 186, 202, 282, 1171, 1417, 1543, 1563
TasI AATT 6 cut(s) 41, 68, 107, 660, 967, 1478
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 5 cut(s) 88, 194, 314, 402, 639
Tru1I TTAA 6 cut(s) 321, 687, 810, 1068, 1157, 1323
Tru9I TTAA 6 cut(s) 321, 687, 810, 1068, 1157, 1323
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 1451
TseI GCWGC 1 cut(s) 6
Tsp45I GTSAC 1 cut(s) 1451
TspDTI ATGAA 3 cut(s) 394, 1081, 1269
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 2 cut(s) 305, 1395
VpaK11BI GGWCC 2 cut(s) 1100, 1115
XapI RAATTY 4 cut(s) 41, 68, 967, 1478
XceI RCATGY 2 cut(s) 714, 1497
XmiI GTMKAC 2 cut(s) 186, 1335
XmnI GAANNNNTTC 4 cut(s) 41, 198, 909, 1167
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.