Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

23844526 .. 23846810

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g21030.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGTGATGGGTCTGATATCTCAGTTGGAGGATGGCCATTTTTACTTGGAAGACCTTTCTTCGTCTGTGGAAATCGACTTATCGAATACCAGATAACTGCAGGGTTTTTCGTGGAGAACACAATAGTTGTCGCAGAAGGTGAGATGCTTTTAGAGGGTGTCTTTCAGGTGATTACTTGTGGATTTCCTCCGCTTGAGCCCAGAGACGAGTCCCTCCAATTTATTGCAGGGAATGACTTTTTTGGTAGTAGTTCTCTAACAGAAGAGGAGACTCTTAGACTTGCAAAGTTGGATAGGACAGTAGCTAATGACAATGTTGTCATACTATCTGACATTTGGCTCGACGATGAAGAGGCTATGGGAAAGCTAGAGACAGTATTCAGTGCCTTTGAGGATGAAGAATTTGTACCATGCTTATTTGTACTCATGGGGAATTTTTGCTCTCGCCCATGTAGTCTTGCTTTTCATTCTTTCTCCAGTCTCAGGTTGCAGTTTGGCAAGCTAGGGAAGATGATTGCAGCCCATCCACGGCTAGTAGAGGGTAGTTGTTTTCTATTTATCCCAGGTCCTGATGATGCAGGCCCTTCAACAGCTCTGCCCAGGAATGCTTTACCAAAATATTTAACGGAAGAGCTTCAAACTCACATTCCAAATGCCATATTTTCCAGTAATCCTTGCAGATTAAAGTTGGGTACCAAGGAGGTTGTATTTTTCCGTCAAGATCTGCTCTACAGAATGCGTCGTTCCTGTTTGGTTCCCCCTTGTACAGTAGAAACTGATGATCACTTTGAGCATCTTGTTGCCACCATAACCCATCAATGTCATCTCTGCCCACTCCCTCTTACTGTACAACCCATCATTTGGAATTACGATCACTCGCTTTACCTCTATCCGACTCCCGACACGATAGTTTTAGGTGACAGAAGTGACCAGAAGGCTTTCAAATACACAGGAATCACTTGTTTTAATCCTGGTTCCTTCTCAAGTGATAGTACCTTTGTGGTATTCCGTCCCTGCACCCAGGAAGTCGAACTGTCGTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

349

Amino Acids

38.9

Weight (kDa)

4.75

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	317
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	861
AciI	CCGC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	401, 433
AfaI	GTAC	6 cut(s)	408, 423, 694, 766, 849, 994
AfiI	CCNNNNNNNGG	3 cut(s)	483, 528, 861
AgsI	TTSAA	3 cut(s)	588, 638, 943
AjnI	CCWGG	4 cut(s)	562, 599, 970, 1020
AluBI	AGCT	5 cut(s)	305, 367, 502, 593, 634
AluI	AGCT	5 cut(s)	305, 367, 502, 593, 634
Alw26I	GTCTC	4 cut(s)	198, 263, 365, 485
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	35, 580
ApeKI	GCWGC	1 cut(s)	518
ApoI	RAATTY	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	2 cut(s)	633, 938
Asp718I	GGTACC	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	566, 581
AsuHPI	GGTGA	4 cut(s)	17, 152, 181, 929
AvaII	GGWCC	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbsI	GAAGAC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	5 cut(s)	2, 27, 531, 822, 863
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	4 cut(s)	564, 601, 972, 1022
BclI	TGATCA	1 cut(s)	781
BcoDI	GTCTC	4 cut(s)	198, 263, 365, 485
BfaI	CTAG	3 cut(s)	368, 503, 533
BfmI	CTRYAG	2 cut(s)	99, 730
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	1 cut(s)	519
BlsI	GCNGC	1 cut(s)	520
Bme1390I	CCNGG	4 cut(s)	564, 601, 972, 1022
Bme18I	GGWCC	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	566, 581
BmiI	GGNNCC	3 cut(s)	694, 756, 976
BmrFI	CCNGG	4 cut(s)	564, 601, 972, 1022
BmsI	GCATC	3 cut(s)	135, 565, 802
BpiI	GAAGAC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	460
BpuEI	CTTGAG	2 cut(s)	215, 967
BsaJI	CCNNGG	5 cut(s)	527, 562, 599, 696, 1020
Bsc4I	CCNNNNNNNGG	3 cut(s)	483, 528, 861
Bse1I	ACTGG	2 cut(s)	477, 666
BseBI	CCWGG	4 cut(s)	564, 601, 972, 1022
BseDI	CCNNGG	5 cut(s)	527, 562, 599, 696, 1020
BseGI	GGATG	3 cut(s)	38, 400, 523
BseLI	CCNNNNNNNGG	3 cut(s)	483, 528, 861
BseMII	CTCAG	2 cut(s)	36, 496
BseNI	ACTGG	2 cut(s)	477, 666
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	1000
BshFI	GGCC	2 cut(s)	37, 582
BshNI	GGYRCC	1 cut(s)	692
BslFI	GGGAC	2 cut(s)	196, 996
BslI	CCNNNNNNNGG	3 cut(s)	483, 528, 861
BsmAI	GTCTC	4 cut(s)	198, 263, 365, 485
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	196, 996
BsmI	GAATGC	2 cut(s)	610, 741
BsnI	GGCC	2 cut(s)	37, 582
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp1407I	TGTACA	2 cut(s)	764, 847
Bsp143I	GATC	3 cut(s)	721, 781, 871
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	37, 582
BspCNI	CTCAG	2 cut(s)	35, 495
BspLI	GGNNCC	3 cut(s)	694, 756, 976
BspMAI	CTGCAG	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	692
BsrGI	TGTACA	2 cut(s)	764, 847
BsrI	ACTGG	2 cut(s)	477, 666
BssECI	CCNNGG	5 cut(s)	527, 562, 599, 696, 1020
BssMI	GATC	3 cut(s)	721, 781, 871
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	4 cut(s)	564, 601, 972, 1022
Bst4CI	ACNGT	5 cut(s)	301, 376, 769, 847, 1035
Bst6I	CTCTTC	3 cut(s)	258, 345, 624
BstAUI	TGTACA	2 cut(s)	764, 847
BstC8I	GCNNGC	2 cut(s)	500, 580
BstDEI	CTNAG	3 cut(s)	22, 275, 482
BstDSI	CCRYGG	1 cut(s)	527
BstF5I	GGATG	3 cut(s)	38, 400, 523
BstKTI	GATC	3 cut(s)	724, 784, 874
BstMAI	GTCTC	4 cut(s)	198, 263, 365, 485
BstMBI	GATC	3 cut(s)	721, 781, 871
BstNI	CCWGG	4 cut(s)	564, 601, 972, 1022
BstSCI	CCNGG	4 cut(s)	562, 599, 970, 1020
BstSFI	CTRYAG	2 cut(s)	99, 730
BstV1I	GCAGC	1 cut(s)	530
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	37, 582
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	38, 400, 523
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	500, 580
CaiI	CAGNNNCTG	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	566, 581
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	6 cut(s)	407, 422, 693, 765, 848, 993
CviAII	CATG	3 cut(s)	411, 427, 450
CviQI	GTAC	6 cut(s)	407, 422, 693, 765, 848, 993
DdeI	CTNAG	3 cut(s)	22, 275, 482
DpnI	GATC	3 cut(s)	723, 783, 873
DpnII	GATC	3 cut(s)	721, 781, 871
DrdI	GACNNNNNNGTC	1 cut(s)	317
DseDI	GACNNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	35
Eam1104I	CTCTTC	3 cut(s)	258, 345, 624
EarI	CTCTTC	3 cut(s)	258, 345, 624
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	566
EcoO109I	RGGNCCY	2 cut(s)	566, 581
EcoRII	CCWGG	4 cut(s)	562, 599, 970, 1020
EcoRV	GATATC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	696
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	3 cut(s)	414, 430, 453
FaiI	YATR	7 cut(s)	323, 359, 412, 428, 451, 659, 809
FaqI	GGGAC	2 cut(s)	196, 996
FatI	CATG	3 cut(s)	410, 426, 449
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	1 cut(s)	519
FokI	GGATG	3 cut(s)	45, 407, 510
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	519
FspBI	CTAG	3 cut(s)	368, 503, 533
GluI	GCNGC	1 cut(s)	519
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	37, 582
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	3 cut(s)	414, 430, 453
HinfI	GANTC	4 cut(s)	209, 271, 895, 954
HphI	GGTGA	4 cut(s)	17, 152, 181, 929
Hpy188I	TCNGA	3 cut(s)	16, 331, 894
Hpy188III	TCNNGA	3 cut(s)	569, 719, 899
Hpy99I	CGWCG	2 cut(s)	347, 744
HpyAV	CCTTC	4 cut(s)	131, 594, 928, 988
HpyCH4III	ACNGT	5 cut(s)	301, 376, 769, 847, 1035
HpyCH4V	TGCA	8 cut(s)	101, 227, 284, 490, 518, 578, 678, 1017
HpyF3I	CTNAG	3 cut(s)	22, 275, 482
Hsp92II	CATG	3 cut(s)	414, 430, 453
KpnI	GGTACC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	3 cut(s)	721, 781, 871
LguI	GCTCTTC	1 cut(s)	624
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	3 cut(s)	135, 565, 802
MaeI	CTAG	3 cut(s)	368, 503, 533
MaeIII	GTNAC	2 cut(s)	917, 926
MalI	GATC	3 cut(s)	723, 783, 873
MboI	GATC	3 cut(s)	721, 781, 871
MboII	GAAGA	7 cut(s)	52, 63, 275, 362, 410, 520, 641
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	37
MluCI	AATT	4 cut(s)	218, 401, 433, 865
MluNI	TGGCCA	1 cut(s)	37
MlyI	GAGTC	3 cut(s)	218, 265, 889
MmeI	TCCRAC	3 cut(s)	7, 270, 917
Mox20I	TGGCCA	1 cut(s)	37
MroXI	GAANNNNTTC	2 cut(s)	633, 938
MscI	TGGCCA	1 cut(s)	37
MseI	TTAA	3 cut(s)	623, 683, 966
Msp20I	TGGCCA	1 cut(s)	37
MspR9I	CCNGG	4 cut(s)	564, 601, 972, 1022
Mva1269I	GAATGC	2 cut(s)	610, 741
MvaI	CCWGG	4 cut(s)	564, 601, 972, 1022
NdeII	GATC	3 cut(s)	721, 781, 871
NlaIII	CATG	3 cut(s)	414, 430, 453
NlaIV	GGNNCC	3 cut(s)	694, 756, 976
NmuCI	GTSAC	2 cut(s)	917, 926
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	2 cut(s)	610, 741
PdmI	GAANNNNTTC	2 cut(s)	633, 938
PfeI	GAWTC	1 cut(s)	954
PflMI	CCANNNNNTGG	1 cut(s)	861
PkrI	GCNGC	1 cut(s)	520
PleI	GAGTC	3 cut(s)	217, 265, 889
PpsI	GAGTC	3 cut(s)	217, 265, 889
PpuMI	RGGWCCY	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	566
Psp6I	CCWGG	4 cut(s)	562, 599, 970, 1020
PspGI	CCWGG	4 cut(s)	562, 599, 970, 1020
PspN4I	GGNNCC	3 cut(s)	694, 756, 976
PspPI	GGNCC	2 cut(s)	566, 581
PspPPI	RGGWCCY	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	721
RsaI	GTAC	6 cut(s)	408, 423, 694, 766, 849, 994
RsaNI	GTAC	6 cut(s)	407, 422, 693, 765, 848, 993
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	3 cut(s)	623, 683, 966
SatI	GCNGC	1 cut(s)	519
Sau3AI	GATC	3 cut(s)	721, 781, 871
Sau96I	GGNCC	2 cut(s)	566, 581
SchI	GAGTC	3 cut(s)	218, 265, 889
ScrFI	CCNGG	4 cut(s)	564, 601, 972, 1022
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	3 cut(s)	135, 565, 802
SfcI	CTRYAG	2 cut(s)	99, 730
SinI	GGWCC	1 cut(s)	566
SmlI	CTYRAG	2 cut(s)	194, 982
SmoI	CTYRAG	2 cut(s)	194, 982
Sse9I	AATT	4 cut(s)	218, 401, 433, 865
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	620
SspMI	CTAG	3 cut(s)	368, 503, 533
StyD4I	CCNGG	4 cut(s)	562, 599, 970, 1020
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	5 cut(s)	301, 376, 769, 847, 1035
TaqI	TCGA	4 cut(s)	76, 84, 342, 1029
TasI	AATT	4 cut(s)	218, 401, 433, 865
TatI	WGTACW	3 cut(s)	421, 764, 847
TfiI	GAWTC	1 cut(s)	954
Tru1I	TTAA	3 cut(s)	623, 683, 966
Tru9I	TTAA	3 cut(s)	623, 683, 966
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	917, 926
TseI	GCWGC	1 cut(s)	518
Tsp45I	GTSAC	2 cut(s)	917, 926
TspDTI	ATGAA	3 cut(s)	363, 411, 455
TspGWI	ACGGA	3 cut(s)	641, 704, 998
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	861
VpaK11BI	GGWCC	1 cut(s)	566
XapI	RAATTY	2 cut(s)	401, 433
XmnI	GAANNNNTTC	2 cut(s)	633, 938
XspI	CTAG	3 cut(s)	368, 503, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.