Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

68277301 .. 68278212

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGACGACGAGGAAGAAGGTGCAGAAGAAGTGCAAAATCAGAGGCTTCACTCTTAAAGTCGACGCCCTCGAAGAGATTCTATCCTTCGTCTCCAAATTCGACGATTCCGACCACGACAGCGCCATCGATGTCGTCCTCGAGCAGCTCCAGCTCCAACCCCTTAAGTCTTCCATAATCGACAAGCAGACGGTCCAGAGCGTCGTTAGCATTTTGTTACAGGCTGACGCCGCCGTAGGTGACGAAACCCTAGGTGGTGGTTTGGCCGTATGCGACGCCTTCTTGGTCCCAAAGTTCCGATATGATCCCATCAAGAAGATTTTCTACAAGCCTAGTGAGAGCCAGCTGCCGATTCATGGAAATGCGTTCGCAAAAGCGGCTCTGTATAAGGATAGGTTTCTCTTGATCTCCCAGAGGCTCTCTCGCCATCAGCATTTTGCCAAACGAGCCTTTGATTCTGAAATGTCTGATTTCGGAAGCTGTGAGATATCTCAAATTCAGTCTCTGGTTGGACAAACCGGAAGGAGATGGGTGATGGGTTTGATATCGCAGTTGGAAGATGGTCATTTTTACCTGGAAGACCTTACTGCGTCGGTGGAAATCAACTTATCCAATGCAATATCCTTTACTGACTCTCTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

214

Amino Acids

23.86

Weight (kDa)

6.52

Isoelectric Point (pI)

54.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dpoe2NT	PF12213	4 - 68	7.5e-10	DNA polymerases epsilon N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	2 cut(s)	228, 374
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	95, 492
AcyI	GRCGYC	3 cut(s)	63, 225, 273
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflII	CTTAAG	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	4 cut(s)	145, 151, 343, 477
AluI	AGCT	4 cut(s)	145, 151, 343, 477
Alw26I	GTCTC	2 cut(s)	94, 504
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	142, 343
ApoI	RAATTY	2 cut(s)	95, 492
Asp700I	GAANNNNTTC	2 cut(s)	75, 317
AspA2I	CCTAGG	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	190, 283
AsuHPI	GGTGA	2 cut(s)	248, 541
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	190, 283
AvrII	CCTAGG	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbsI	GAAGAC	2 cut(s)	159, 582
BbvI	GCAGC	2 cut(s)	154, 330
BccI	CCATC	6 cut(s)	131, 314, 432, 519, 526, 551
BceAI	ACGGC	2 cut(s)	215, 248
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	94, 504
BfaI	CTAG	2 cut(s)	248, 330
BfoI	RGCGCY	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	4 cut(s)	143, 228, 344, 375
BlnI	CCTAGG	1 cut(s)	247
BlsI	GCNGC	4 cut(s)	144, 229, 345, 376
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	2 cut(s)	190, 283
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	190, 283
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	572
BpiI	GAAGAC	2 cut(s)	159, 582
BplI	GAGNNNNNCTC	2 cut(s)	403, 435
BpmI	CTGGAG	1 cut(s)	131
Bsa29I	ATCGAT	1 cut(s)	126
BsaHI	GRCGYC	3 cut(s)	63, 225, 273
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseXI	GCAGC	2 cut(s)	154, 330
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	516
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	2 cut(s)	94, 504
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	301, 402
BspACI	CCGC	2 cut(s)	228, 374
BspANI	GGCC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	301, 402
BssNI	GRCGYC	3 cut(s)	63, 225, 273
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	66, 639
BstACI	GRCGYC	3 cut(s)	63, 225, 273
BstAFI	CTTAAG	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	2 cut(s)	304, 405
BstMAI	GTCTC	2 cut(s)	94, 504
BstMBI	GATC	2 cut(s)	301, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 204, 227, 374, 443
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	154, 330
BstV2I	GAAGAC	2 cut(s)	159, 582
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	190, 283
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	5 cut(s)	71, 187, 233, 281, 576
CviAII	CATG	1 cut(s)	353
DpnI	GATC	2 cut(s)	303, 404
DpnII	GATC	2 cut(s)	301, 402
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	66, 639
EarI	CTCTTC	2 cut(s)	66, 639
Eco130I	CCWWGG	1 cut(s)	247
Eco32I	GATATC	2 cut(s)	486, 543
Eco47I	GGWCC	2 cut(s)	190, 283
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	570
EcoRV	GATATC	2 cut(s)	486, 543
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	1 cut(s)	356
FaiI	YATR	5 cut(s)	173, 268, 300, 354, 384
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	143, 228, 344, 375
Fsp4HI	GCNGC	4 cut(s)	143, 228, 344, 375
FspBI	CTAG	2 cut(s)	248, 330
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	4 cut(s)	143, 228, 344, 375
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	5 cut(s)	71, 187, 233, 281, 576
HhaI	GCGC	1 cut(s)	122
Hin1I	GRCGYC	3 cut(s)	63, 225, 273
Hin1II	CATG	1 cut(s)	356
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	5 cut(s)	76, 104, 349, 452, 629
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	248, 541
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	6 cut(s)	41, 109, 296, 457, 466, 473
Hpy188III	TCNNGA	3 cut(s)	193, 310, 400
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	6 cut(s)	10, 65, 104, 203, 275, 592
HpyAV	CCTTC	4 cut(s)	10, 94, 286, 513
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	22, 33, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 204, 227, 374, 443
Hsp92I	GRCGYC	3 cut(s)	63, 225, 273
Hsp92II	CATG	1 cut(s)	356
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	301, 402
LmnI	GCTCC	2 cut(s)	150, 156
LpnPI	CCDG	9 cut(s)	161, 203, 206, 353, 422, 488, 529, 557, 584
Lsp1109I	GCAGC	2 cut(s)	154, 330
MaeI	CTAG	2 cut(s)	248, 330
MaeIII	GTNAC	2 cut(s)	213, 236
MalI	GATC	2 cut(s)	303, 404
MboI	GATC	2 cut(s)	301, 402
MboII	GAAGA	8 cut(s)	25, 37, 83, 159, 325, 566, 587, 626
MluCI	AATT	2 cut(s)	95, 492
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	4 cut(s)	132, 178, 487, 531
MnlI	CCTC	5 cut(s)	3, 35, 77, 146, 405
MroXI	GAANNNNTTC	2 cut(s)	75, 317
MseI	TTAA	3 cut(s)	54, 162, 640
MslI	CAYNNNNRTG	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	343
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	5 cut(s)	148, 204, 227, 374, 443
NdeII	GATC	2 cut(s)	301, 402
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 105
PdmI	GAANNNNTTC	2 cut(s)	75, 317
PfeI	GAWTC	4 cut(s)	76, 104, 349, 452
PkrI	GCNGC	4 cut(s)	144, 229, 345, 376
PleI	GAGTC	1 cut(s)	623
PpsI	GAGTC	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	190, 283
PspXI	VCTCGAGB	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	54, 162, 640
SatI	GCNGC	4 cut(s)	143, 228, 344, 375
Sau3AI	GATC	2 cut(s)	301, 402
Sau96I	GGNCC	2 cut(s)	190, 283
SchI	GAGTC	1 cut(s)	623
ScrFI	CCNGG	1 cut(s)	572
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	2 cut(s)	190, 283
SlaI	CTCGAG	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	137, 161
SmoI	CTYRAG	2 cut(s)	137, 161
Sse9I	AATT	2 cut(s)	95, 492
SsiI	CCGC	2 cut(s)	228, 374
SspMI	CTAG	2 cut(s)	248, 330
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	6 cut(s)	60, 69, 99, 126, 138, 177
TasI	AATT	2 cut(s)	95, 492
TauI	GCSGC	2 cut(s)	230, 377
TfiI	GAWTC	4 cut(s)	76, 104, 349, 452
Tru1I	TTAA	3 cut(s)	54, 162, 640
Tru9I	TTAA	3 cut(s)	54, 162, 640
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	142, 343
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	341
Vha464I	CTTAAG	1 cut(s)	161
VpaK11BI	GGWCC	2 cut(s)	190, 283
XapI	RAATTY	2 cut(s)	95, 492
XhoI	CTCGAG	1 cut(s)	137
XmaJI	CCTAGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	2 cut(s)	75, 317
XspI	CTAG	2 cut(s)	248, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.