Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Forward (+)

16008443 .. 16009066

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGACTTACTGCAACACCAAAAGGGTAGTAGCACCGATCTTGGTGCTGACACCATCAGAGGAAAAGATAAGGAGACGATGCACCGCCTCATTACCAAACTGTCGCGTGCTGATGCGGCCATCTACAATGGCGATGATGACGGTGTTACTAGTACATCTACGACGGCGATGAAGACTCTCCTTGGAGAAGGTGGTGGTCCGAGATTCGAGAGAGCTCCTGGAACGGTCCAGAATAAGAGAAGAGGAAAAAGAAAAAGAAAAAAAAAAAAAAAAAAGGACCCGTGGACCCGGCCCAAAACGGGCCGGGTTAGATCCGGTTTCTGTGTAAGAATTTGTTGGAACTGCCCCAGCCCGCCCCATTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

123

Amino Acids

13.64

Weight (kDa)

10.44

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	106
AciI	CCGC	3 cut(s)	85, 116, 353
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	299
AhlI	ACTAGT	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	3 cut(s)	117, 290, 301
ApoI	RAATTY	1 cut(s)	330
AspS9I	GGNCC	6 cut(s)	197, 226, 277, 285, 291, 301
AsuC2I	CCSGG	2 cut(s)	289, 305
AvaII	GGWCC	4 cut(s)	197, 226, 277, 285
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	2 cut(s)	62, 128
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	2 cut(s)	289, 305
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	219, 289, 305
Bme18I	GGWCC	4 cut(s)	197, 226, 277, 285
BmgT120I	GGNCC	6 cut(s)	197, 226, 277, 285, 291, 301
BmiI	GGNNCC	2 cut(s)	279, 287
BmrFI	CCNGG	3 cut(s)	219, 289, 305
BmsI	GCATC	2 cut(s)	69, 103
BpiI	GAAGAC	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	289, 305
BsaJI	CCNNGG	2 cut(s)	181, 281
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	181, 281
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	119, 292, 303
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	289, 304, 315
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	119, 292, 303
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	37, 311
BspACI	CCGC	3 cut(s)	85, 116, 353
BspANI	GGCC	3 cut(s)	119, 292, 303
BspFNI	CGCG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	279, 287
BspPI	GGATC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	181, 281
BssMI	GATC	2 cut(s)	37, 311
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	3 cut(s)	102, 143, 226
Bst6I	CTCTTC	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	108, 353
BstDSI	CCRYGG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	40, 314
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	2 cut(s)	37, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	217, 287, 303
BstUI	CGCG	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	119, 292, 303
BtgI	CCRYGG	1 cut(s)	281
BtgZI	GCGATG	2 cut(s)	147, 182
Cac8I	GCNNGC	2 cut(s)	108, 353
Cfr13I	GGNCC	6 cut(s)	197, 226, 277, 285, 291, 301
Csp6I	GTAC	1 cut(s)	153
CviJI	RGCY	5 cut(s)	119, 215, 292, 303, 351
CviKI_1	RGCY	5 cut(s)	119, 215, 292, 303, 351
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	2 cut(s)	39, 313
DpnII	GATC	2 cut(s)	37, 311
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	235
EarI	CTCTTC	1 cut(s)	235
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	4 cut(s)	197, 226, 277, 285
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	68
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	119, 292, 303
HapII	CCGG	3 cut(s)	289, 304, 315
HinfI	GANTC	2 cut(s)	175, 204
HpaII	CCGG	3 cut(s)	289, 304, 315
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	59, 201
Hpy188III	TCNNGA	2 cut(s)	208, 229
Hpy8I	GTNNAC	1 cut(s)	285
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	3 cut(s)	102, 143, 226
HpyCH4V	TGCA	2 cut(s)	13, 82
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Kzo9I	GATC	2 cut(s)	37, 311
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	7 cut(s)	204, 231, 242, 302, 317, 328, 361
LweI	GCATC	2 cut(s)	69, 103
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	39, 313
MboI	GATC	2 cut(s)	37, 311
MboII	GAAGA	2 cut(s)	184, 252
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	53, 98, 236
MseI	TTAA	1 cut(s)	367
MspI	CCGG	3 cut(s)	289, 304, 315
MspR9I	CCNGG	3 cut(s)	219, 289, 305
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	116
NciI	CCSGG	2 cut(s)	289, 305
NdeII	GATC	2 cut(s)	37, 311
NlaIV	GGNNCC	2 cut(s)	279, 287
PfeI	GAWTC	1 cut(s)	204
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PpuMI	RGGWCCY	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	279, 287
PspPI	GGNCC	6 cut(s)	197, 226, 277, 285, 291, 301
PspPPI	RGGWCCY	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	367
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	37, 311
Sau96I	GGNCC	6 cut(s)	197, 226, 277, 285, 291, 301
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	219, 289, 305
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	2 cut(s)	193, 217
SfaNI	GCATC	2 cut(s)	69, 103
SinI	GGWCC	4 cut(s)	197, 226, 277, 285
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	1 cut(s)	330
SsiI	CCGC	3 cut(s)	85, 116, 353
SspMI	CTAG	1 cut(s)	150
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	217, 287, 303
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	3 cut(s)	102, 143, 226
TaqI	TCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	330
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	367
Tru9I	TTAA	1 cut(s)	367
TspDTI	ATGAA	1 cut(s)	185
VpaK11BI	GGWCC	4 cut(s)	197, 226, 277, 285
XapI	RAATTY	1 cut(s)	330
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.