Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004494

Physical Location & Seq

Genomic Coordinates Reverse (-)

36645180 .. 36648568

Gene Structure 3389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1235400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGAGCAGCTCGGGGAGGAAGAAGGTGCAGAGGAAGTGCAAGATCAGAGGGTACACGCTTGACCCGGACGCCGTCGACGAGATCCTCTCCTTCGCGTCCAATTTCGACGACTCTGCTCCCGACGACGATGCCATCGATCTCCTCCTCGACTTCCTCGAGACCCAACCCCGAAAAGACAAGGAGACGGTGCACCGCCTCGTTACCAAACTGTCGCGTGCTGATGCGGCCGTCTACGACGGCGATGATGACGGTGGTGGTGGTACCTCGGAACCTGATTGGCACATAATTGATGCCTTCAAGGTCCCAAAGTTCCGATACGATCCCATCAAGAAAAGTTTCTACAGGCATACTGGGAGATTATCTATTCATGGCGAAGCATCGGCTAAATCGGCTCTGTACAGGGATAGGTTTCTCTTGCTCTCCCAGATTATCTCTCGCCAAAAGGAGTTTTCCAGACCGGCATTTGGTTCTAAATCGTCGGATGCAGGTCGCCGCGAGATATCTCCAATTCAGTCCCTGATTGGGCAAACCGGAAGGAGATGGGTGATGGGTCTGATATCTCAGTTGGAGGATGGCCATTTTTACTTGGAAGACCTTTCTTCGTCTATAACCGCAGGGTTTTTCGTGGAGAACACAATAGTTGTTGCAGAAGGTGAGATGCTTTTAGAGGGTGTCTTTCAGGTGATTACTTGTGGATTTCCTCCGCTTGAGCCCAGAGACGAGTCCCTCCAATTTATTGCAGGGAATGACTTTTTTGGTAGTAGTTCTCTAACAGAAGAGGAGACTCTTAGACTTGCAAAGTTGGATAGGACAGTAGCTAATGACAATGTCGTCATACTATCTGACATTTGGCTCGACGATGAAGAGGCTATGGGAAAGCTAGAGACAGTATTCAGTGCCTTTGAGGATGAAGAATTTGTACCATGCTTATTTGTACTCATGGGGAATTTTTGCTCTCGCCCGTGTAATCTTGCTTTTCATTCTTTCTCCAGTCTCAGGTTGCAGTTTGGCAAGCTAGGGAAGATGATTGCAGCCCATCCACGGCTAGTAGAGGGTAGTTGTTTTCTATTTATCCCAGGTCCTGATGATGCAGGCCCTTCGACAGCTCTGCCCAGGAATGCTTTACCAAAATATTTAACGGAAGAGCTTCAAACTCACATTCCAAATGCCATATTTTCCAGTAATCCTTGCAGATTAAAGTTGGGTACCAAGGAGGTTGTATTTTTCCGTCAAGATCTGCTCTACAGAATGCGTCGTTCCTGTCTGGTTCCCCCTTGTACAGTAGAAACTGATGATCACTTCGAGCATCTTGTTGCCACCATAACCCATCAATGTCATCTCTGCCCACTCCCTCTTATTGTACAACCCATCATTTGGAATTACGATCACTCGCTTTACCTCTATCCAACTCCCGACACGATAGTTTTAGGTGACAGAAGTGACCAGAAGGCTTTCAAATACACAGGAATCACTTGTTTTAATCCTGGTTCCTTCTCAAGTGATAGTACCTTTGTGGTATTCCGTCCCTGCACCCAGGAAGTCGAATTGTCGTCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000731 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0008622 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0018130 GO:0019438 GO:0019899 GO:0019985 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070182 GO:0071704 GO:0071897 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map05166

Pfam Domains

Protein Families

DNA_pol_E_B Dpoe2NT

Protein Analysis

520

Amino Acids

58.22

Weight (kDa)

5.18

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_E_B	PF04042	277 - 482	4.6e-46	DNA polymerase alpha/epsilon subunit B

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004494)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22110 AT5G22110
fragaria_vesca	FvH4_5g17980
malus_domestica	MD06G1235400.v1.1 MD14G1242400.v1.1
prunus_persica	Prupe.5G240100_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1 Prupe.8G055400_v2.0.a1
pyrus_communis	pycom06g21030 pycom14g12970 pycom14g20380
rosa_chinensis	RchiOBHm_Chr7g0177621
rosa_laevigata	RLG00000005519 RLG00000005520
rosa_multiflora	Rmu_ssc0000330.1_g000015
rosa_roxburghii	Rroxscaffold_3G00275720
rosa_rugosa	Rorug06G0407900 Rorug06G0408000
rosa_samantha	Rh7AG007200 Rh7AG007300 Rh7BG007200 Rh7BG007300 Rh7CG007700 Rh7CG007800 Rh7DG007400 Rh7DG007500
rosa_wichuraiana	Rw7G000620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	830
Acc36I	ACCTGC	1 cut(s)	476
Acc65I	GGTACC	2 cut(s)	260, 1205
AccB1I	GGYRCC	2 cut(s)	260, 1205
AccB7I	CCANNNNNTGG	1 cut(s)	1374
AccI	GTMKAC	2 cut(s)	75, 231
AccII	CGCG	3 cut(s)	95, 214, 495
AciI	CCGC	5 cut(s)	193, 224, 493, 612, 704
AclWI	GGATC	2 cut(s)	76, 314
AcoI	YGGCCR	2 cut(s)	225, 574
AcsI	RAATTY	2 cut(s)	914, 946
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	9 cut(s)	53, 262, 398, 921, 936, 1207, 1279, 1362, 1507
AfiI	CCNNNNNNNGG	5 cut(s)	464, 522, 996, 1041, 1374
AgsI	TTSAA	3 cut(s)	298, 1151, 1456
AjnI	CCWGG	4 cut(s)	1075, 1112, 1483, 1533
AluBI	AGCT	6 cut(s)	9, 818, 880, 1015, 1106, 1147
AluI	AGCT	6 cut(s)	9, 818, 880, 1015, 1106, 1147
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	6 cut(s)	152, 176, 711, 776, 878, 998
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	76, 314
AlwNI	CAGNNNCTG	2 cut(s)	517, 1082
Ama87I	CYCGRG	2 cut(s)	10, 155
AoxI	GGCC	3 cut(s)	225, 574, 1093
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	2 cut(s)	6, 1031
ApoI	RAATTY	2 cut(s)	914, 946
Asp700I	GAANNNNTTC	3 cut(s)	335, 1146, 1451
Asp718I	GGTACC	2 cut(s)	260, 1205
AspS9I	GGNCC	3 cut(s)	301, 1079, 1094
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	4 cut(s)	556, 665, 694, 1442
AvaI	CYCGRG	2 cut(s)	10, 155
AvaII	GGWCC	2 cut(s)	301, 1079
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	576
BanI	GGYRCC	2 cut(s)	260, 1205
BanII	GRGCYC	1 cut(s)	714
BarI	GAAGNNNNNNTAC	2 cut(s)	903, 935
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	18, 1043
BccI	CCATC	8 cut(s)	140, 332, 534, 541, 566, 1044, 1335, 1376
BceAI	ACGGC	4 cut(s)	56, 212, 253, 1058
BcgI	CGANNNNNNTGC	8 cut(s)	95, 110, 129, 144, 1080, 1090, 1114, 1124
BciT130I	CCWGG	4 cut(s)	1077, 1114, 1485, 1535
BclI	TGATCA	1 cut(s)	1294
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	6 cut(s)	152, 176, 711, 776, 878, 998
BfaI	CTAG	3 cut(s)	881, 1016, 1046
BfmI	CTRYAG	2 cut(s)	340, 1243
BfuAI	ACCTGC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	1234
BisI	GCNGC	4 cut(s)	7, 225, 493, 1032
BlsI	GCNGC	4 cut(s)	8, 226, 494, 1033
Bme1390I	CCNGG	5 cut(s)	65, 1077, 1114, 1485, 1535
Bme18I	GGWCC	2 cut(s)	301, 1079
BmeT110I	CYCGRG	2 cut(s)	10, 155
BmgT120I	GGNCC	3 cut(s)	301, 1079, 1094
BmiI	GGNNCC	6 cut(s)	262, 270, 303, 1207, 1269, 1489
BmrFI	CCNGG	5 cut(s)	65, 1077, 1114, 1485, 1535
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	8 cut(s)	118, 211, 280, 386, 472, 648, 1078, 1315
BmuI	ACTGGG	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	973
BpuEI	CTTGAG	2 cut(s)	728, 1480
BpuMI	CCSGG	1 cut(s)	65
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	6 cut(s)	264, 1040, 1075, 1112, 1209, 1533
BsaWI	WCCGGW	1 cut(s)	530
Bsc4I	CCNNNNNNNGG	5 cut(s)	464, 522, 996, 1041, 1374
Bse118I	RCCGGY	1 cut(s)	457
Bse1I	ACTGG	3 cut(s)	355, 990, 1179
BseBI	CCWGG	4 cut(s)	1077, 1114, 1485, 1535
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	6 cut(s)	264, 1040, 1075, 1112, 1209, 1533
BseGI	GGATG	4 cut(s)	487, 577, 913, 1036
BseLI	CCNNNNNNNGG	5 cut(s)	464, 522, 996, 1041, 1374
BseMII	CTCAG	2 cut(s)	575, 1009
BseNI	ACTGG	3 cut(s)	355, 990, 1179
BseRI	GAGGAG	3 cut(s)	131, 134, 794
BseSI	GKGCMC	1 cut(s)	192
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	18, 1043
BsgI	GTGCAG	2 cut(s)	47, 1513
Bsh1236I	CGCG	3 cut(s)	95, 214, 495
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	227, 576, 1095
BshNI	GGYRCC	2 cut(s)	260, 1205
BshVI	ATCGAT	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	2 cut(s)	10, 155
BsiSI	CCGG	3 cut(s)	65, 458, 531
BslFI	GGGAC	4 cut(s)	287, 499, 709, 1509
BslI	CCNNNNNNNGG	5 cut(s)	464, 522, 996, 1041, 1374
BsmAI	GTCTC	6 cut(s)	152, 176, 711, 776, 878, 998
BsmBI	CGTCTC	2 cut(s)	176, 711
BsmFI	GGGAC	4 cut(s)	287, 499, 709, 1509
BsmI	GAATGC	2 cut(s)	1123, 1254
BsnI	GGCC	3 cut(s)	227, 576, 1095
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	10, 155
Bsp1286I	GDGCHC	2 cut(s)	192, 714
Bsp1407I	TGTACA	3 cut(s)	396, 1277, 1360
Bsp143I	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
BspACI	CCGC	5 cut(s)	193, 224, 493, 612, 704
BspANI	GGCC	3 cut(s)	227, 576, 1095
BspCNI	CTCAG	2 cut(s)	574, 1008
BspDI	ATCGAT	1 cut(s)	135
BspFNI	CGCG	3 cut(s)	95, 214, 495
BspLI	GGNNCC	6 cut(s)	262, 270, 303, 1207, 1269, 1489
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	2 cut(s)	76, 314
BspQI	GCTCTTC	1 cut(s)	1137
BspT107I	GGYRCC	2 cut(s)	260, 1205
BspTNI	GGTCTC	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	457
BsrGI	TGTACA	3 cut(s)	396, 1277, 1360
BsrI	ACTGG	3 cut(s)	355, 990, 1179
BssAI	RCCGGY	1 cut(s)	457
BssECI	CCNNGG	6 cut(s)	264, 1040, 1075, 1112, 1209, 1533
BssMI	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	1209
Bst2UI	CCWGG	4 cut(s)	1077, 1114, 1485, 1535
Bst4CI	ACNGT	6 cut(s)	187, 210, 251, 814, 889, 1282
Bst6I	CTCTTC	3 cut(s)	771, 858, 1137
BstACI	GRCGYC	1 cut(s)	69
BstAUI	TGTACA	3 cut(s)	396, 1277, 1360
BstC8I	GCNNGC	3 cut(s)	216, 1013, 1093
BstDEI	CTNAG	3 cut(s)	561, 788, 995
BstDSI	CCRYGG	1 cut(s)	1040
BstF5I	GGATG	4 cut(s)	487, 577, 913, 1036
BstFNI	CGCG	3 cut(s)	95, 214, 495
BstKTI	GATC	7 cut(s)	45, 84, 139, 322, 1237, 1297, 1387
BstMAI	GTCTC	6 cut(s)	152, 176, 711, 776, 878, 998
BstMBI	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 389
BstNI	CCWGG	4 cut(s)	1077, 1114, 1485, 1535
BstSCI	CCNGG	5 cut(s)	63, 1075, 1112, 1483, 1533
BstSFI	CTRYAG	2 cut(s)	340, 1243
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	3 cut(s)	95, 214, 495
BstV1I	GCAGC	2 cut(s)	18, 1043
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	81, 1234
BstYI	RGATCY	2 cut(s)	81, 1234
BstZI	CGGCCG	1 cut(s)	225
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	227, 576, 1095
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	1040
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	487, 577, 913, 1036
BtsIMutI	CAGTG	1 cut(s)	901
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	3 cut(s)	216, 1013, 1093
CaiI	CAGNNNCTG	2 cut(s)	517, 1082
Cfr10I	RCCGGY	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	301, 1079, 1094
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	3 cut(s)	77, 84, 1241
Csp6I	GTAC	9 cut(s)	52, 261, 397, 920, 935, 1206, 1278, 1361, 1506
CviAII	CATG	3 cut(s)	368, 924, 940
CviQI	GTAC	9 cut(s)	52, 261, 397, 920, 935, 1206, 1278, 1361, 1506
DdeI	CTNAG	3 cut(s)	561, 788, 995
DpnI	GATC	7 cut(s)	44, 83, 138, 321, 1236, 1296, 1386
DpnII	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
DrdI	GACNNNNNNGTC	1 cut(s)	830
DseDI	GACNNNNNNGTC	1 cut(s)	830
EaeI	YGGCCR	2 cut(s)	225, 574
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	771, 858, 1137
EarI	CTCTTC	3 cut(s)	771, 858, 1137
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	1209
Eco24I	GRGCYC	1 cut(s)	714
Eco31I	GGTCTC	1 cut(s)	152
Eco32I	GATATC	2 cut(s)	501, 558
Eco47I	GGWCC	2 cut(s)	301, 1079
Eco52I	CGGCCG	1 cut(s)	225
Eco88I	CYCGRG	2 cut(s)	10, 155
EcoO109I	RGGNCCY	3 cut(s)	301, 1079, 1094
EcoRII	CCWGG	4 cut(s)	1075, 1112, 1483, 1533
EcoRV	GATATC	2 cut(s)	501, 558
EcoT14I	CCWWGG	1 cut(s)	1209
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	1209
Esp3I	CGTCTC	2 cut(s)	176, 711
FaeI	CATG	3 cut(s)	371, 927, 943
FaqI	GGGAC	4 cut(s)	287, 499, 709, 1509
FatI	CATG	3 cut(s)	367, 923, 939
FbaI	TGATCA	1 cut(s)	1294
FblI	GTMKAC	2 cut(s)	75, 231
Fnu4HI	GCNGC	4 cut(s)	7, 225, 493, 1032
FokI	GGATG	4 cut(s)	494, 584, 920, 1023
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	4 cut(s)	7, 225, 493, 1032
FspBI	CTAG	3 cut(s)	881, 1016, 1046
GluI	GCNGC	4 cut(s)	7, 225, 493, 1032
GsuI	CTGGAG	1 cut(s)	973
HaeIII	GGCC	3 cut(s)	227, 576, 1095
HapII	CCGG	3 cut(s)	65, 458, 531
HgaI	GACGC	3 cut(s)	77, 84, 1241
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	3 cut(s)	371, 927, 943
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	4 cut(s)	110, 722, 784, 1467
HpaII	CCGG	3 cut(s)	65, 458, 531
HphI	GGTGA	4 cut(s)	556, 665, 694, 1442
Hpy166II	GTNNAC	4 cut(s)	54, 76, 190, 232
Hpy188I	TCNGA	6 cut(s)	47, 268, 314, 481, 555, 844
Hpy188III	TCNNGA	7 cut(s)	119, 157, 328, 453, 1082, 1232, 1412
Hpy8I	GTNNAC	4 cut(s)	54, 76, 190, 232
Hpy99I	CGWCG	9 cut(s)	77, 80, 110, 125, 128, 239, 481, 860, 1257
HpyAV	CCTTC	8 cut(s)	16, 100, 304, 528, 644, 1107, 1441, 1501
HpyCH4III	ACNGT	6 cut(s)	187, 210, 251, 814, 889, 1282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 389
HpyF3I	CTNAG	3 cut(s)	561, 788, 995
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	3 cut(s)	371, 927, 943
KpnI	GGTACC	2 cut(s)	264, 1209
Ksp22I	TGATCA	1 cut(s)	1294
Kzo9I	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
LguI	GCTCTTC	1 cut(s)	1137
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	2 cut(s)	18, 1043
LweI	GCATC	8 cut(s)	118, 211, 280, 386, 472, 648, 1078, 1315
MaeI	CTAG	3 cut(s)	881, 1016, 1046
MaeIII	GTNAC	3 cut(s)	199, 1430, 1439
MalI	GATC	7 cut(s)	44, 83, 138, 321, 1236, 1296, 1386
MboI	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
MboII	GAAGA	8 cut(s)	31, 591, 602, 788, 875, 923, 1033, 1154
MflI	RGATCY	2 cut(s)	81, 1234
MhlI	GDGCHC	2 cut(s)	192, 714
MlsI	TGGCCA	1 cut(s)	576
MluCI	AATT	8 cut(s)	100, 285, 507, 731, 914, 946, 1378, 1544
MluNI	TGGCCA	1 cut(s)	576
MlyI	GAGTC	3 cut(s)	104, 731, 778
MmeI	TCCRAC	4 cut(s)	459, 546, 783, 1430
Mox20I	TGGCCA	1 cut(s)	576
MroXI	GAANNNNTTC	3 cut(s)	335, 1146, 1451
MscI	TGGCCA	1 cut(s)	576
MseI	TTAA	3 cut(s)	1136, 1196, 1479
Msp20I	TGGCCA	1 cut(s)	576
MspI	CCGG	3 cut(s)	65, 458, 531
MspR9I	CCNGG	5 cut(s)	65, 1077, 1114, 1485, 1535
Mva1269I	GAATGC	2 cut(s)	1123, 1254
MvaI	CCWGG	4 cut(s)	1077, 1114, 1485, 1535
MvnI	CGCG	3 cut(s)	95, 214, 495
MwoI	GCNNNNNNNGC	2 cut(s)	224, 389
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
NlaIII	CATG	3 cut(s)	371, 927, 943
NlaIV	GGNNCC	6 cut(s)	262, 270, 303, 1207, 1269, 1489
NmuCI	GTSAC	2 cut(s)	1430, 1439
PaeR7I	CTCGAG	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	1137
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 132, 153
PctI	GAATGC	2 cut(s)	1123, 1254
PdmI	GAANNNNTTC	3 cut(s)	335, 1146, 1451
PfeI	GAWTC	1 cut(s)	1467
PflFI	GACNNNGTC	2 cut(s)	71, 827
PflMI	CCANNNNNTGG	1 cut(s)	1374
PkrI	GCNGC	4 cut(s)	8, 226, 494, 1033
PleI	GAGTC	3 cut(s)	104, 730, 778
PpsI	GAGTC	3 cut(s)	104, 730, 778
PpuMI	RGGWCCY	2 cut(s)	301, 1079
Psp5II	RGGWCCY	2 cut(s)	301, 1079
Psp6I	CCWGG	4 cut(s)	1075, 1112, 1483, 1533
PspGI	CCWGG	4 cut(s)	1075, 1112, 1483, 1533
PspN4I	GGNNCC	6 cut(s)	262, 270, 303, 1207, 1269, 1489
PspPI	GGNCC	3 cut(s)	301, 1079, 1094
PspPPI	RGGWCCY	2 cut(s)	301, 1079
PstNI	CAGNNNCTG	2 cut(s)	517, 1082
PsuI	RGATCY	2 cut(s)	81, 1234
PsyI	GACNNNGTC	2 cut(s)	71, 827
RsaI	GTAC	9 cut(s)	53, 262, 398, 921, 936, 1207, 1279, 1362, 1507
RsaNI	GTAC	9 cut(s)	52, 261, 397, 920, 935, 1206, 1278, 1361, 1506
SalI	GTCGAC	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	1137
SaqAI	TTAA	3 cut(s)	1136, 1196, 1479
SatI	GCNGC	4 cut(s)	7, 225, 493, 1032
Sau3AI	GATC	7 cut(s)	42, 81, 136, 319, 1234, 1294, 1384
Sau96I	GGNCC	3 cut(s)	301, 1079, 1094
SchI	GAGTC	3 cut(s)	104, 731, 778
ScrFI	CCNGG	5 cut(s)	65, 1077, 1114, 1485, 1535
SduI	GDGCHC	2 cut(s)	192, 714
SfaNI	GCATC	8 cut(s)	118, 211, 280, 386, 472, 648, 1078, 1315
SfcI	CTRYAG	2 cut(s)	340, 1243
Sfr274I	CTCGAG	1 cut(s)	155
SgrDI	CGTCGACG	1 cut(s)	74
SinI	GGWCC	2 cut(s)	301, 1079
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	155, 707, 1495
SmoI	CTYRAG	3 cut(s)	155, 707, 1495
Sse9I	AATT	8 cut(s)	100, 285, 507, 731, 914, 946, 1378, 1544
SsiI	CCGC	5 cut(s)	193, 224, 493, 612, 704
SspI	AATATT	1 cut(s)	1133
SspMI	CTAG	3 cut(s)	881, 1016, 1046
StyD4I	CCNGG	5 cut(s)	63, 1075, 1112, 1483, 1533
StyI	CCWWGG	1 cut(s)	1209
TaaI	ACNGT	6 cut(s)	187, 210, 251, 814, 889, 1282
TaqI	TCGA	9 cut(s)	75, 105, 135, 147, 156, 855, 1100, 1302, 1542
TasI	AATT	8 cut(s)	100, 285, 507, 731, 914, 946, 1378, 1544
TatI	WGTACW	4 cut(s)	396, 934, 1277, 1360
TauI	GCSGC	2 cut(s)	227, 495
TfiI	GAWTC	1 cut(s)	1467
Tru1I	TTAA	3 cut(s)	1136, 1196, 1479
Tru9I	TTAA	3 cut(s)	1136, 1196, 1479
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	2 cut(s)	1430, 1439
TseI	GCWGC	2 cut(s)	6, 1031
Tsp45I	GTSAC	2 cut(s)	1430, 1439
TspDTI	ATGAA	4 cut(s)	356, 876, 924, 968
TspGWI	ACGGA	3 cut(s)	1154, 1217, 1511
TspRI	CASTG	1 cut(s)	901
Tth111I	GACNNNGTC	2 cut(s)	71, 827
Van91I	CCANNNNNTGG	1 cut(s)	1374
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	301, 1079
XapI	RAATTY	2 cut(s)	914, 946
XhoI	CTCGAG	1 cut(s)	155
XmiI	GTMKAC	2 cut(s)	75, 231
XmnI	GAANNNNTTC	3 cut(s)	335, 1146, 1451
XspI	CTAG	3 cut(s)	881, 1016, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.