Prupe.5G240100_v2.0.a1

DNA polymerase epsilon subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
18107364 .. 18110848
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G240100.1

Sequence Viewer

Length: 1467 bp
ATGAGCAGCTCCACGAGGAAGAAGGTGCAGAAGAAGTGCAAGATCAGAGGCTACACGCTTGAATTGGACGCCGTCGACGAGATCCTCTCCTTTGAATCCGAATTCAACAACGACTCTGCTTTGGACGATCCCGTCGATATCCTCCTCGCGACCCAGCCCATAAAAGACAAGGAGACGGTGCACCGCATTGCTACCCGTATATTGGGTGCTGATGCGGCCATCAACGAAACCACCGACGGCGATGGTGATGATGTTATAAGAGCCTCTGATTTGCTCATAATTGATGCCTTCAAGGTCCCAAAGTTCCGATATGATCCCATCAAGAAGGTTTTTTACAAGCATACTGGGAGCCTACCCATTCATGGGTTTCTCTTGATCTCCCAGATGCTTTCTCGCCATAAGAATTTTTCCAACCCGGCCTTTGATTCTGAATTGTCAGATTTCGGACGCTGTGAGATATCTCCAATTCAGTCTCTGATTGGGCAAACTGGAAGGAGATGGGTGATGGGTCTGATATCTCAGTTGGAGGATGGCCATTTTTACTTGGAAGACCTTTCTGCTTCTGATATGGCTATGCCTGAACTCATAAAAGCTAGAGTTGAGGTTCAGTCAAATCAAAAGCATGAAATCATCATTTTCCTTGACAATATATACAAGATAACTGCAGGATTTTTTGTAGAGAACACAATAGTTGTTGCAGAAGGCGAGATGCTCTTAGAGGGTGTCTTTCAGGTGTTTAATTGCGGATTTCCTTCGCTTGAGGACAGAGATAAGTCACTCCAATTTCTTGCAGGACATGACTCTTTTGGTAGTGGTACACTAACAGAACAGGAGACGCTCAGACTTGCAAAGTTGGAAAGAGAAGCAGTTAATGGGAATGTTGTCATACTGTCTGACATTTGGCTAGACAATGAAGAGCCTATGGGAAAGCTGGAGAGAGTCCTAGATGCTTTTGAGAATGAGGACTTTGTACCGTGCTTATTTGTACTCATGGGGAATTTTTGTTCTCATCCATGTAATCTTGGTTTCCACTCCTTCTCCAATCTCATTAACAGGCAAATGATTGCTGCCCATCCACGGCTAAAAGAGGGTAGTTGTTTTCTGTTTATCCCAGGTCCCGATGATGCAGAGGAGCTTCAAAATCACATTCCAAATGCCATATTTTCAAGTAATCCTTGTAGAATGAAGTTCTGTAGCCAGGGGCTGGTATTTTTCCGTCAGGATCTGCTGTGCAGAATGCGTTGTTCATGTCTGATGCCCCCTTCTACAGAAGAAACTACTGATGACTTTGAGCATTCCCTGTACCTCTATCCAACTCCACATACGATAGTTTTAGGTGACAGAAGCGAGCAAAAGGCTTTCAAATACACAGGAATCACTTGTTTTAATCCTGGTTCCTTCTCAAGCGATGGCGCCTTTGTGGTATACCGTCCTGACAATGAGGAAGTTGAATTATCATCCTTATAG

Protein Analysis

489

Amino Acids

54.97

Weight (kDa)

4.87

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AasI GACNNNNNNGTC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 1412
AccB7I CCANNNNNTGG 1 cut(s) 1204
AccI GTMKAC 2 cut(s) 75, 1425
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 184, 215, 744
AclWI GGATC 4 cut(s) 76, 122, 308, 1230
AcoI YGGCCR 2 cut(s) 216, 532
AcsI RAATTY 3 cut(s) 101, 403, 997
AcyI GRCGYC 2 cut(s) 69, 1413
AfaI GTAC 4 cut(s) 817, 972, 987, 1304
AfiI CCNNNNNNNGG 5 cut(s) 202, 362, 363, 1077, 1204
AgsI TTSAA 8 cut(s) 62, 95, 106, 292, 1139, 1167, 1363, 1451
AjnI CCWGG 3 cut(s) 1111, 1197, 1390
AloI GAACNNNNNNTCC 2 cut(s) 988, 1020
AluBI AGCT 4 cut(s) 9, 593, 931, 1135
AluI AGCT 4 cut(s) 9, 593, 931, 1135
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 3 cut(s) 167, 477, 827
Alw44I GTGCAC 1 cut(s) 179
AlwI GGATC 4 cut(s) 76, 122, 308, 1230
AlwNI CAGNNNCTG 3 cut(s) 475, 1204, 1225
AoxI GGCC 3 cut(s) 216, 417, 532
ApaLI GTGCAC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 6, 1067
ApoI RAATTY 3 cut(s) 101, 403, 997
AspLEI GCGC 1 cut(s) 1415
AspS9I GGNCC 2 cut(s) 295, 1115
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 3 cut(s) 257, 514, 1349
AvaII GGWCC 2 cut(s) 295, 1115
BaeGI GKGCMC 1 cut(s) 183
BalI TGGCCA 1 cut(s) 534
BanI GGYRCC 1 cut(s) 1412
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 18, 1054
BccI CCATC 8 cut(s) 227, 236, 326, 492, 499, 524, 1080, 1403
BceAI ACGGC 3 cut(s) 56, 253, 1094
BciT130I CCWGG 3 cut(s) 1113, 1199, 1392
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 167, 477, 827
BfaI CTAG 3 cut(s) 594, 905, 944
BfmI CTRYAG 3 cut(s) 663, 1192, 1266
BfoI RGCGCY 1 cut(s) 1416
BisI GCNGC 3 cut(s) 7, 216, 1068
BlsI GCNGC 3 cut(s) 8, 217, 1069
Bme1390I CCNGG 4 cut(s) 416, 1113, 1199, 1392
Bme18I GGWCC 2 cut(s) 295, 1115
BmgT120I GGNCC 2 cut(s) 295, 1115
BmiI GGNNCC 5 cut(s) 297, 350, 1117, 1396, 1414
BmrFI CCNGG 4 cut(s) 416, 1113, 1199, 1392
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 7 cut(s) 202, 274, 375, 699, 937, 1114, 1245
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpmI CTGGAG 1 cut(s) 953
BpuEI CTTGAG 2 cut(s) 779, 1387
BpuMI CCSGG 1 cut(s) 416
BsaHI GRCGYC 2 cut(s) 69, 1413
BsaJI CCNNGG 3 cut(s) 1076, 1111, 1198
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 362, 363, 1077, 1204
Bse1I ACTGG 2 cut(s) 349, 493
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 3 cut(s) 1113, 1199, 1392
BseDI CCNNGG 3 cut(s) 1076, 1111, 1198
BseGI GGATG 4 cut(s) 535, 1009, 1072, 1457
BseLI CCNNNNNNNGG 5 cut(s) 202, 362, 363, 1077, 1204
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 533, 853
BseNI ACTGG 2 cut(s) 349, 493
BseRI GAGGAG 2 cut(s) 134, 1145
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 18, 1054
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 2 cut(s) 47, 1252
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 218, 419, 534
BshNI GGYRCC 1 cut(s) 1412
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 416
BslFI GGGAC 2 cut(s) 281, 1101
BslI CCNNNNNNNGG 5 cut(s) 202, 362, 363, 1077, 1204
BsmAI GTCTC 3 cut(s) 167, 477, 827
BsmBI CGTCTC 2 cut(s) 167, 827
BsmFI GGGAC 2 cut(s) 281, 1101
BsmI GAATGC 2 cut(s) 1242, 1294
BsnI GGCC 3 cut(s) 218, 419, 534
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 3 cut(s) 184, 215, 744
BspANI GGCC 3 cut(s) 218, 419, 534
BspCNI CTCAG 2 cut(s) 532, 852
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 5 cut(s) 297, 350, 1117, 1396, 1414
BspMAI CTGCAG 1 cut(s) 667
BspPI GGATC 4 cut(s) 76, 122, 308, 1230
BspQI GCTCTTC 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 1412
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 2 cut(s) 349, 493
BssECI CCNNGG 3 cut(s) 1076, 1111, 1198
BssMI GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
BssNAI GTATAC 1 cut(s) 1426
BssNI GRCGYC 2 cut(s) 69, 1413
BssSI CACGAG 1 cut(s) 13
Bst1107I GTATAC 1 cut(s) 1426
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 3 cut(s) 1113, 1199, 1392
Bst4CI ACNGT 4 cut(s) 178, 891, 975, 1430
Bst6I CTCTTC 1 cut(s) 909
BstACI GRCGYC 2 cut(s) 69, 1413
BstC8I GCNNGC 1 cut(s) 1349
BstDEI CTNAG 3 cut(s) 519, 715, 839
BstDSI CCRYGG 1 cut(s) 1076
BstF5I GGATG 4 cut(s) 535, 1009, 1072, 1457
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 1416
BstHHI GCGC 1 cut(s) 1415
BstKTI GATC 6 cut(s) 45, 84, 130, 316, 378, 1225
BstMAI GTCTC 3 cut(s) 167, 477, 827
BstMBI GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 3 cut(s) 1113, 1199, 1392
BstSCI CCNGG 4 cut(s) 414, 1111, 1197, 1390
BstSFI CTRYAG 3 cut(s) 663, 1192, 1266
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 18, 1054
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 2 cut(s) 81, 1222
BstYI RGATCY 2 cut(s) 81, 1222
BstZ17I GTATAC 1 cut(s) 1426
BsuRI GGCC 3 cut(s) 218, 419, 534
BtgI CCRYGG 1 cut(s) 1076
BtgZI GCGATG 2 cut(s) 255, 1422
BtsCI GGATG 4 cut(s) 535, 1009, 1072, 1457
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 1349
CaiI CAGNNNCTG 3 cut(s) 475, 1204, 1225
CfoI GCGC 1 cut(s) 1415
Cfr13I GGNCC 2 cut(s) 295, 1115
CseI GACGC 3 cut(s) 77, 456, 844
Csp6I GTAC 4 cut(s) 816, 971, 986, 1303
CviAII CATG 6 cut(s) 362, 623, 797, 991, 1014, 1248
CviQI GTAC 4 cut(s) 816, 971, 986, 1303
DdeI CTNAG 3 cut(s) 519, 715, 839
DinI GGCGCC 1 cut(s) 1414
DpnI GATC 6 cut(s) 44, 83, 129, 315, 377, 1224
DpnII GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 216, 532
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco32I GATATC 3 cut(s) 139, 459, 516
Eco47I GGWCC 2 cut(s) 295, 1115
EcoO109I RGGNCCY 2 cut(s) 295, 1115
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 1111, 1197, 1390
EcoRV GATATC 3 cut(s) 139, 459, 516
EgeI GGCGCC 1 cut(s) 1414
EheI GGCGCC 1 cut(s) 1414
Esp3I CGTCTC 2 cut(s) 167, 827
FaeI CATG 6 cut(s) 365, 626, 800, 994, 1017, 1251
FalI AAGNNNNNCTT 2 cut(s) 1159, 1191
FaqI GGGAC 2 cut(s) 281, 1101
FatI CATG 6 cut(s) 361, 622, 796, 990, 1013, 1247
FblI GTMKAC 2 cut(s) 75, 1425
Fnu4HI GCNGC 3 cut(s) 7, 216, 1068
FokI GGATG 4 cut(s) 542, 996, 1059, 1444
Fsp4HI GCNGC 3 cut(s) 7, 216, 1068
FspBI CTAG 3 cut(s) 594, 905, 944
GlaI GCGC 1 cut(s) 1414
GluI GCNGC 3 cut(s) 7, 216, 1068
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 953
HaeII RGCGCY 1 cut(s) 1416
HaeIII GGCC 3 cut(s) 218, 419, 534
HapII CCGG 1 cut(s) 416
HgaI GACGC 3 cut(s) 77, 456, 844
HhaI GCGC 1 cut(s) 1415
Hin1I GRCGYC 2 cut(s) 69, 1413
Hin1II CATG 6 cut(s) 365, 626, 800, 994, 1017, 1251
Hin6I GCGC 1 cut(s) 1413
HinP1I GCGC 1 cut(s) 1413
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 6 cut(s) 95, 113, 425, 800, 939, 1374
HpaII CCGG 1 cut(s) 416
HphI GGTGA 3 cut(s) 257, 514, 1349
Hpy166II GTNNAC 4 cut(s) 76, 181, 818, 1426
Hpy188III TCNNGA 6 cut(s) 148, 322, 373, 1118, 1220, 1433
Hpy8I GTNNAC 4 cut(s) 76, 181, 818, 1426
Hpy99I CGWCG 4 cut(s) 77, 80, 137, 239
HpyAV CCTTC 9 cut(s) 16, 298, 319, 486, 695, 762, 1045, 1272, 1408
HpyCH4III ACNGT 4 cut(s) 178, 891, 975, 1430
HpyCH4V TGCA 9 cut(s) 28, 39, 181, 665, 698, 791, 848, 1127, 1233
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 3 cut(s) 519, 715, 839
Hsp92I GRCGYC 2 cut(s) 69, 1413
Hsp92II CATG 6 cut(s) 365, 626, 800, 994, 1017, 1251
HspAI GCGC 1 cut(s) 1413
KasI GGCGCC 1 cut(s) 1412
Kzo9I GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
LguI GCTCTTC 1 cut(s) 909
LmnI GCTCC 3 cut(s) 14, 348, 1132
Lsp1109I GCAGC 2 cut(s) 18, 1054
LweI GCATC 7 cut(s) 202, 274, 375, 699, 937, 1114, 1245
MaeI CTAG 3 cut(s) 594, 905, 944
MaeIII GTNAC 2 cut(s) 774, 1337
MalI GATC 6 cut(s) 44, 83, 129, 315, 377, 1224
MboI GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
MboII GAAGA 5 cut(s) 31, 43, 560, 926, 1283
MflI RGATCY 2 cut(s) 81, 1222
MhlI GDGCHC 1 cut(s) 183
MlsI TGGCCA 1 cut(s) 534
MluNI TGGCCA 1 cut(s) 534
Mly113I GGCGCC 1 cut(s) 1413
MlyI GAGTC 3 cut(s) 107, 794, 948
MmeI TCCRAC 4 cut(s) 435, 504, 834, 1337
Mox20I TGGCCA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 534
MseI TTAA 4 cut(s) 738, 870, 1050, 1386
Msp20I TGGCCA 1 cut(s) 534
MspI CCGG 1 cut(s) 416
MspR9I CCNGG 4 cut(s) 416, 1113, 1199, 1392
Mva1269I GAATGC 2 cut(s) 1242, 1294
MvaI CCWGG 3 cut(s) 1113, 1199, 1392
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 215
NarI GGCGCC 1 cut(s) 1413
NciI CCSGG 1 cut(s) 416
NdeII GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
NlaIII CATG 6 cut(s) 365, 626, 800, 994, 1017, 1251
NlaIV GGNNCC 5 cut(s) 297, 350, 1117, 1396, 1414
NmuCI GTSAC 2 cut(s) 774, 1337
NruI TCGCGA 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 909
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 132, 231
PctI GAATGC 2 cut(s) 1242, 1294
PfeI GAWTC 3 cut(s) 95, 425, 1374
PflFI GACNNNGTC 1 cut(s) 71
PflMI CCANNNNNTGG 1 cut(s) 1204
PkrI GCNGC 3 cut(s) 8, 217, 1069
PleI GAGTC 3 cut(s) 107, 794, 947
PluTI GGCGCC 1 cut(s) 1416
PpsI GAGTC 3 cut(s) 107, 794, 947
PpuMI RGGWCCY 2 cut(s) 295, 1115
PsiI TTATAA 1 cut(s) 257
Psp5II RGGWCCY 2 cut(s) 295, 1115
Psp6I CCWGG 3 cut(s) 1111, 1197, 1390
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 3 cut(s) 1111, 1197, 1390
PspN4I GGNNCC 5 cut(s) 297, 350, 1117, 1396, 1414
PspPI GGNCC 2 cut(s) 295, 1115
PspPPI RGGWCCY 2 cut(s) 295, 1115
PstI CTGCAG 1 cut(s) 667
PstNI CAGNNNCTG 3 cut(s) 475, 1204, 1225
PsuI RGATCY 2 cut(s) 81, 1222
PsyI GACNNNGTC 1 cut(s) 71
RruI TCGCGA 1 cut(s) 149
RsaI GTAC 4 cut(s) 817, 972, 987, 1304
RsaNI GTAC 4 cut(s) 816, 971, 986, 1303
SalI GTCGAC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 738, 870, 1050, 1386
SatI GCNGC 3 cut(s) 7, 216, 1068
Sau3AI GATC 6 cut(s) 42, 81, 127, 313, 375, 1222
Sau96I GGNCC 2 cut(s) 295, 1115
SchI GAGTC 3 cut(s) 107, 794, 948
ScrFI CCNGG 4 cut(s) 416, 1113, 1199, 1392
SduI GDGCHC 1 cut(s) 183
SfaNI GCATC 7 cut(s) 202, 274, 375, 699, 937, 1114, 1245
SfcI CTRYAG 3 cut(s) 663, 1192, 1266
SfoI GGCGCC 1 cut(s) 1414
SgrDI CGTCGACG 1 cut(s) 74
SinI GGWCC 2 cut(s) 295, 1115
SmlI CTYRAG 2 cut(s) 758, 1402
SmoI CTYRAG 2 cut(s) 758, 1402
SsiI CCGC 3 cut(s) 184, 215, 744
SspDI GGCGCC 1 cut(s) 1412
SspMI CTAG 3 cut(s) 594, 905, 944
StyD4I CCNGG 4 cut(s) 414, 1111, 1197, 1390
TaaI ACNGT 4 cut(s) 178, 891, 975, 1430
TaqI TCGA 2 cut(s) 75, 135
TatI WGTACW 1 cut(s) 985
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 3 cut(s) 95, 425, 1374
Tru1I TTAA 4 cut(s) 738, 870, 1050, 1386
Tru9I TTAA 4 cut(s) 738, 870, 1050, 1386
TseFI GTSAC 2 cut(s) 774, 1337
TseI GCWGC 2 cut(s) 6, 1067
Tsp45I GTSAC 2 cut(s) 774, 1337
TspDTI ATGAA 5 cut(s) 350, 639, 927, 1199, 1236
TspGWI ACGGA 1 cut(s) 1205
Tth111I GACNNNGTC 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 1204
VneI GTGCAC 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 295, 1115
XapI RAATTY 3 cut(s) 101, 403, 997
XmiI GTMKAC 2 cut(s) 75, 1425
XspI CTAG 3 cut(s) 594, 905, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.